| Tag |
Content |
| WERAM ID |
WERAM-Arl-0113 |
| Ensembl Protein ID |
fgenesh2_kg.8__2309__AT5G63110.1 |
| Gene Name |
HDA6 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
4.80e-163 |
542.8 |
19 |
332 |
|
| Organism |
Arabidopsis lyrata |
| Domain Profile |
HDAC Class-I
class-1.txt 1 kkvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenae 77
++v+y+y++++g+y+ygq+hpmkp+r++++h+L+++y+l+++lei +p+ a+a+++ +fhs ey++fl +v+pe++
fgenesh2_kg.8__2309__AT5G63110.1 19 RRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPNLADASDIGRFHSPEYVDFLASVSPESMG 95
589************************************************************************99 PP
class-1.txt 78 ..elskelkkfnvgedcPvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlai 152
+ s++l++fnvgedcPvfdglf++c++++G+s+ aa kLn+++adiainw GGlhhakkseasGfcyvnDivl+i
fgenesh2_kg.8__2309__AT5G63110.1 96 dpSSSRNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGI 172
4445589********************************************************************** PP
class-1.txt 153 lellkkhkrvlyididlhhGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDes 229
lellk++krvlyidid+hhGDgveeafyttdrvmtvsfhk+g+ ffPgtG+++dvgaekgkyya+nvPl+dg+dDes
fgenesh2_kg.8__2309__AT5G63110.1 173 LELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIRDVGAEKGKYYALNVPLNDGMDDES 248
*******************************************.********************************* PP
class-1.txt 230 yekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlpllvlGGGGYtlrnvaRcwt 306
++++f+++i+kv+e+++PeavvlqcGaDsl+gDrlg+fnls+kgha+c++f++s+n+pl+vlGGGGYt+rnvaRcw+
fgenesh2_kg.8__2309__AT5G63110.1 249 FRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWC 325
***************************************************************************** PP
class-1.txt 307 yetavvl 313
yetav++
fgenesh2_kg.8__2309__AT5G63110.1 326 YETAVAV 332
****986 PP
|
Protein Sequence
(Fasta) | MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR 60
LEISRPNLAD ASDIGRFHSP EYVDFLASVS PESMGDPSSS RNLRRFNVGE DCPVFDGLFD 120
FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK 180
RVLYIDIDVH HGDGVEEAFY TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL 240
NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL 300
RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPG 360
PMENLNTPKD MEKIRNTLLE QLSGLIHAPS VQFQHTPPVN RVLDEPEEDM EQRPKPRIWS 420
GTVTYESDSD DDDKPLHGYS GRGGATMDRD STGEDEMEDD NPEPDVNPPS S 471Protein Fasta Sequence
>fgenesh2_kg.8__2309__AT5G63110.1|Class-I|Arabidopsis lyrata
MEADESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPNLADASDIGRFHSPEYVDFLASVSPESMGDPSSSRNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPGPMENLNTPKDMEKIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEEDMEQRPKPRIWSGTVTYESDSDDDDKPLHGYSGRGGATMDRDSTGEDEMEDDNPEPDVNPPSS |
Nucleotide Sequence
(Fasta) | TAGTAATGAC TTTCTCAGGC ATAGTAGACA CAAATTTTGC TCGGAGTAAA AACTTGGGAA 60
TAGAGAGAGA CAGAGACTCT GAGTGAGAGA GAGAGACGAA GATGGAGGCA GACGAAAGCG 120
GCATCTCTCT GCCGTCGGGA CCCGACGGAC GTAAGCGGCG AGTCAGTTAC TTCTACGAGC 180
CGACGATCGG AGACTACTAC TACGGTCAAG GACATCCGAT GAAGCCTCAC CGGATCCGTA 240
TGGCTCATAG CCTAATCATT CACTATCACC TCCACCGTCG CTTAGAAATC AGTCGTCCTA 300
ACCTCGCTGA CGCCTCCGAT ATCGGCCGGT TTCATTCGCC GGAGTATGTC GATTTCCTCG 360
CTTCCGTTTC GCCGGAATCT ATGGGCGATC CTTCCTCTTC ACGAAACCTA AGGCGATTCA 420
ATGTCGGTGA GGATTGTCCT GTCTTCGACG GACTTTTTGA TTTTTGCCGT GCTTCCGCCG 480
GAGGTTCGAT TGGTGCTGCC GTCAAATTAA ACAGACAGGA CGCTGATATC GCTATCAATT 540
GGGGCGGTGG CCTTCACCAT GCTAAGAAAA GCGAGGCCTC TGGGTTTTGC TATGTAAATG 600
ATATCGTTTT AGGGATTCTC GAGTTGCTCA AGATGTTTAA GCGGGTTCTC TACATAGATA 660
TCGATGTCCA CCATGGAGAT GGAGTGGAAG AAGCGTTTTA CACCACTGAT AGAGTTATGA 720
CTGTTTCTTT CCACAAATTT GGGGACTTTT TCCCAGGAAC TGGTCACATA AGAGATGTTG 780
GCGCAGAAAA AGGGAAATAC TATGCTCTAA ATGTTCCGCT AAACGATGGT ATGGACGATG 840
AAAGTTTCCG CAGCTTGTTT AGACCTCTTA TCCAAAAGGT TATGGAAGTG TATCAGCCAG 900
AGGCAGTTGT TCTTCAATGT GGGGCTGACT CGTTAAGTGG TGATCGGTTG GGTTGCTTCA 960
ACTTATCAGT CAAGGGTCAC GCTGATTGCC TTCGGTTCTT AAGATCTTAC AACGTTCCTC 1020
TCATGGTCTT GGGTGGTGGA GGGTATACTA TTCGAAATGT TGCTCGTTGC TGGTGTTATG 1080
AGACTGCAGT TGCTGTTGGA GTAGAGCCAG ACAACAAACT CCCTTACAAT GAGTATTTTG 1140
AGTATTTCGG CCCAGATTAT ACGCTCCATG TCGACCCAGG TCCAATGGAG AACTTAAACA 1200
CGCCAAAAGA TATGGAGAAG ATAAGGAACA CATTGCTGGA ACAACTTTCG GGACTAATAC 1260
ACGCACCTAG CGTCCAGTTT CAGCACACAC CACCAGTCAA TCGAGTTTTG GACGAGCCGG 1320
AAGAAGACAT GGAGCAAAGA CCAAAGCCTC GCATTTGGAG TGGAACTGTG ACTTATGAAT 1380
CAGACAGTGA CGATGATGAT AAACCTCTTC ATGGTTACTC AGGTCGTGGT GGCGCAACTA 1440
TGGACAGGGA CTCTACAGGT GAAGATGAAA TGGAAGACGA TAACCCAGAG CCAGACGTGA 1500
ATCCCCCATC GTCTTAAACC AGCTTGATGG TTGGTGGGTC TTTTGCCATA TGGTAATGTC 1560
GGCAGATTTA AGACACAAGT TAGGGGAATG ATGATTCTTT CATGTTTTTT CAGCAACCTT 1620
TTGAGTTCTG TGAAAACGCT GCATTGATTA GAACGGTGAC AACTGACAAG TATTTTGGCT 1680
CAAGTTAGAA AATCAGAAGA TGTGAAAAAT GCAAAGAAAC ATTTT
1726Nucleotide Fasta Sequence
>fgenesh2_kg.8__2309__AT5G63110.1|Class-I|Arabidopsis lyrata
TAGTAATGACTTTCTCAGGCATAGTAGACACAAATTTTGCTCGGAGTAAAAACTTGGGAATAGAGAGAGACAGAGACTCTGAGTGAGAGAGAGAGACGAAGATGGAGGCAGACGAAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCTACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGACATCCGATGAAGCCTCACCGGATCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTCGTCCTAACCTCGCTGACGCCTCCGATATCGGCCGGTTTCATTCGCCGGAGTATGTCGATTTCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCTCTTCACGAAACCTAAGGCGATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTTCCGCCGGAGGTTCGATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTATCAATTGGGGCGGTGGCCTTCACCATGCTAAGAAAAGCGAGGCCTCTGGGTTTTGCTATGTAAATGATATCGTTTTAGGGATTCTCGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACATAGATATCGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAGTTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAGATGTTGGCGCAGAAAAAGGGAAATACTATGCTCTAAATGTTCCGCTAAACGATGGTATGGACGATGAAAGTTTCCGCAGCTTGTTTAGACCTCTTATCCAAAAGGTTATGGAAGTGTATCAGCCAGAGGCAGTTGTTCTTCAATGTGGGGCTGACTCGTTAAGTGGTGATCGGTTGGGTTGCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACGTTCCTCTCATGGTCTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCTCGTTGCTGGTGTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCAGACAACAAACTCCCTTACAATGAGTATTTTGAGTATTTCGGCCCAGATTATACGCTCCATGTCGACCCAGGTCCAATGGAGAACTTAAACACGCCAAAAGATATGGAGAAGATAAGGAACACATTGCTGGAACAACTTTCGGGACTAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACGAGCCGGAAGAAGACATGGAGCAAAGACCAAAGCCTCGCATTTGGAGTGGAACTGTGACTTATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCAGGTCGTGGTGGCGCAACTATGGACAGGGACTCTACAGGTGAAGATGAAATGGAAGACGATAACCCAGAGCCAGACGTGAATCCCCCATCGTCTTAAACCAGCTTGATGGTTGGTGGGTCTTTTGCCATATGGTAATGTCGGCAGATTTAAGACACAAGTTAGGGGAATGATGATTCTTTCATGTTTTTTCAGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACGGTGACAACTGACAAGTATTTTGGCTCAAGTTAGAAAATCAGAAGATGTGAAAAATGCAAAGAAACATTTT
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
