| Tag |
Content |
| WERAM ID |
WERAM-Brr-0098 |
| Ensembl Protein ID |
Bra019424.1-P |
| Gene Name |
|
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
1.90e-162 |
541.1 |
6 |
317 |
|
| Organism |
Brassica rapa |
| Domain Profile |
HDAC Class-I
class-1.txt 2 kvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdg 97
k++y+yd dvg++++g +hpmkp+rl++th+L+l+ygl+ k+e+++p+ka e+++fhs +y+efl++++pen++ +++e++++n+gedcPvf++
Bra019424.1-P 6 KISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQFHSPDYVEFLQRINPENKDLFPNEMARYNLGEDCPVFED 101
689********************************************************************************************* PP
class-1.txt 98 lfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgveeafyttdrvmtvsfhky 193
+fe+cq+++Ga+++aa++Ln+k +diainwaGGlhhakk++asGfcy+nD+vl+ilellk+h+rvlyidid+hhGDgveeafy+tdrvmtvsfhk+
Bra019424.1-P 102 MFEFCQIYAGATIDAARRLNNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKF 197
************************************************************************************************ PP
class-1.txt 194 geeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghaecvkfvksfnlpll 289
g++ffPgtGd++++g+ +gk+ya+nvPl+dgidD+s++++f+ +iskv+e+++P a+vlqcGaDsla+Drlg+fnlsi+ghaecvkfvk+fn+pll
Bra019424.1-P 198 GDKFFPGTGDVKEIGEREGKFYAINVPLRDGIDDSSFNRLFRAIISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNIPLL 293
************************************************************************************************ PP
class-1.txt 290 vlGGGGYtlrnvaRcwtyetavvl 313
v GGGGYt++nvaRcwt+et+++l
Bra019424.1-P 294 VTGGGGYTKENVARCWTVETGILL 317
**********************97 PP
|
Protein Sequence
(Fasta) | MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM 60
AQFHSPDYVE FLQRINPENK DLFPNEMARY NLGEDCPVFE DMFEFCQIYA GATIDAARRL 120
NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE 180
EAFYFTDRVM TVSFHKFGDK FFPGTGDVKE IGEREGKFYA INVPLRDGID DSSFNRLFRA 240
IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNI PLLVTGGGGY 300
TKENVARCWT VETGILLDTE LPNEIPDNDY IKYFGPDYSL KIPGGHIENL NTKSYISTIK 360
AQILDNLRYI QHAPSVQMQE VPPDFYIPDF DEDERNPDVR VDQRSRDKQI QRDDEYFDGD 420
KDNDAS 426Protein Fasta Sequence
>Bra019424.1-P|Class-I|Brassica rapa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQFHSPDYVEFLQRINPENKDLFPNEMARYNLGEDCPVFEDMFEFCQIYAGATIDAARRLNNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLRDGIDDSSFNRLFRAIISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNIPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPDNDYIKYFGPDYSLKIPGGHIENLNTKSYISTIKAQILDNLRYIQHAPSVQMQEVPPDFYIPDFDEDERNPDVRVDQRSRDKQIQRDDEYFDGDKDNDAS |
Nucleotide Sequence
(Fasta) | ATGCGGTCCA AGGACAAAAT CTCCTACTTT TACGATGGAG ATGTAGGGAG CGTCTATTTT 60
GGTCCGAATC ACCCAATGAA ACCTCACAGG CTTTGTATGA CCCATCATCT TATCCTTGCC 120
TATGGCCTCC ATAGCAAGAT GGAAGTTTAT CGTCCACACA AGGCGTACCC TATCGAGATG 180
GCCCAGTTCC ATTCTCCAGA CTATGTTGAG TTCCTGCAAC GAATCAACCC AGAAAATAAG 240
GATTTGTTTC CCAACGAAAT GGCTAGATAT AATTTAGGAG AGGATTGTCC TGTCTTTGAG 300
GATATGTTTG AGTTTTGTCA AATTTATGCG GGTGCCACCA TAGATGCTGC ACGCAGATTA 360
AACAACAAAC TCTGTGACAT TGCGATCAAC TGGGCGGGCG GGTTGCACCA TGCTAAAAAA 420
TGCGATGCAT CTGGTTTTTG TTACATCAAC GATCTCGTGC TAGGAATCCT CGAGCTGTTG 480
AAACACCATC CTCGAGTGCT CTACATTGAT ATAGATGTTC ATCACGGTGA TGGAGTTGAA 540
GAGGCTTTTT ACTTTACTGA CAGAGTGATG ACTGTTAGCT TTCACAAGTT TGGGGATAAG 600
TTTTTTCCAG GGACCGGCGA TGTTAAGGAA ATAGGAGAAA GGGAAGGGAA GTTTTACGCC 660
ATAAATGTTC CGCTCAGGGA TGGTATTGAT GACAGCAGTT TCAACCGTCT GTTCAGGGCT 720
ATAATTTCGA AGGTGGTTGA GATATATCAG CCAGGTGCAA TAGTACTTCA GTGTGGAGCA 780
GATTCACTAG CAAGGGATCG ACTAGGATGC TTTAATCTTT CTATTGATGG ACATGCTGAG 840
TGTGTTAAAT TCGTCAAGAA ATTCAATATT CCTTTGCTGG TGACTGGAGG TGGAGGGTAC 900
ACAAAGGAGA ACGTAGCTCG GTGTTGGACC GTTGAGACTG GCATTCTTTT GGACACAGAA 960
CTTCCTAATG AGATTCCTGA TAATGATTAT ATAAAGTATT TTGGGCCGGA TTACTCATTG 1020
AAGATTCCTG GTGGTCACAT TGAGAATCTA AATACGAAAT CGTATATCAG TACGATAAAA 1080
GCACAGATTT TGGATAATTT GAGATACATC CAGCACGCTC CAAGCGTGCA GATGCAGGAG 1140
GTTCCACCGG ATTTCTACAT ACCGGATTTT GATGAAGACG AACGAAATCC AGATGTGCGT 1200
GTGGACCAGC GTTCGCGGGA TAAGCAGATT CAGAGGGACG ATGAATATTT CGATGGTGAC 1260
AAGGATAACG ATGCGTCGTA G
1282Nucleotide Fasta Sequence
>Bra019424.1-P|Class-I|Brassica rapa
ATGCGGTCCAAGGACAAAATCTCCTACTTTTACGATGGAGATGTAGGGAGCGTCTATTTTGGTCCGAATCACCCAATGAAACCTCACAGGCTTTGTATGACCCATCATCTTATCCTTGCCTATGGCCTCCATAGCAAGATGGAAGTTTATCGTCCACACAAGGCGTACCCTATCGAGATGGCCCAGTTCCATTCTCCAGACTATGTTGAGTTCCTGCAACGAATCAACCCAGAAAATAAGGATTTGTTTCCCAACGAAATGGCTAGATATAATTTAGGAGAGGATTGTCCTGTCTTTGAGGATATGTTTGAGTTTTGTCAAATTTATGCGGGTGCCACCATAGATGCTGCACGCAGATTAAACAACAAACTCTGTGACATTGCGATCAACTGGGCGGGCGGGTTGCACCATGCTAAAAAATGCGATGCATCTGGTTTTTGTTACATCAACGATCTCGTGCTAGGAATCCTCGAGCTGTTGAAACACCATCCTCGAGTGCTCTACATTGATATAGATGTTCATCACGGTGATGGAGTTGAAGAGGCTTTTTACTTTACTGACAGAGTGATGACTGTTAGCTTTCACAAGTTTGGGGATAAGTTTTTTCCAGGGACCGGCGATGTTAAGGAAATAGGAGAAAGGGAAGGGAAGTTTTACGCCATAAATGTTCCGCTCAGGGATGGTATTGATGACAGCAGTTTCAACCGTCTGTTCAGGGCTATAATTTCGAAGGTGGTTGAGATATATCAGCCAGGTGCAATAGTACTTCAGTGTGGAGCAGATTCACTAGCAAGGGATCGACTAGGATGCTTTAATCTTTCTATTGATGGACATGCTGAGTGTGTTAAATTCGTCAAGAAATTCAATATTCCTTTGCTGGTGACTGGAGGTGGAGGGTACACAAAGGAGAACGTAGCTCGGTGTTGGACCGTTGAGACTGGCATTCTTTTGGACACAGAACTTCCTAATGAGATTCCTGATAATGATTATATAAAGTATTTTGGGCCGGATTACTCATTGAAGATTCCTGGTGGTCACATTGAGAATCTAAATACGAAATCGTATATCAGTACGATAAAAGCACAGATTTTGGATAATTTGAGATACATCCAGCACGCTCCAAGCGTGCAGATGCAGGAGGTTCCACCGGATTTCTACATACCGGATTTTGATGAAGACGAACGAAATCCAGATGTGCGTGTGGACCAGCGTTCGCGGGATAAGCAGATTCAGAGGGACGATGAATATTTCGATGGTGACAAGGATAACGATGCGTCGTAG
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
