WERAM Information

Tag Content
WERAM ID WERAM-Sob-0057
Ensembl Protein ID Sb03g042180.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb03g042180 Sb03g042180.1 Sb03g042180.1
Sb03g042180 Sb03g042180.2 Sb03g042180.2
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader PHD 1.50e-12 48.3 201 251
Organism Sorghum bicolor
Domain Profile
  Me_Reader PHD
        PHD.txt   2 tiClvCgkddegekemvqCdeCddwfHlkCvklplsslpegkswyCpsCke 52 
                    t+C +Cg++d +++++++Cd+C++w+H+kCvk++  +++  k++ Cp C++
  Sb03g042180.1 201 TLCGTCGTNDGKDQFWICCDNCEKWYHGKCVKITPARAEHIKQYKCPDCTN 251
                    78****999999999*******************666664479******97 PP
Protein Sequence
(Fasta)		MDGGGSGPAP NAARTADEVF RDYKARRAGM IKALTTDVER FFKLCDPEKE NLCLYGYPNE 60
TWEVTLPAEE VPPEIPEPAL GINFARDGMN EKDWLALVAV HSDSWLLSVA FYFGARFGFD 120
REARRRLFSM INNMPTIFEV VTGAVKKQAK EKTPNSSSKS NKPSSKVQSR AESRSKAKVP 180
KDEEESGDDD GDEEAEEHDN TLCGTCGTND GKDQFWICCD NCEKWYHGKC VKITPARAEH 240
IKQYKCPDCT NKRARA 256
Nucleotide Sequence
(Fasta)		ATGGACGGCG GGGGCTCCGG GCCGGCGCCC AACGCCGCGC GCACCGCGGA CGAGGTCTTC 60
CGCGACTACA AAGCCCGCCG CGCCGGCATG ATCAAGGCGC TCACCACCGA TGTGGAGAGG 120
TTCTTCAAGC TCTGTGACCC CGAAAAGGAG AACTTGTGCC TTTATGGCTA TCCCAATGAG 180
ACGTGGGAGG TGACCTTGCC AGCTGAGGAA GTGCCCCCAG AGATCCCTGA ACCAGCATTA 240
GGAATCAACT TTGCTAGGGA TGGCATGAAT GAGAAGGACT GGCTGGCGCT AGTTGCAGTC 300
CACAGCGATT CCTGGTTACT CTCTGTTGCA TTCTACTTTG GTGCACGGTT TGGATTTGAC 360
AGAGAAGCTA GGAGGCGACT CTTTAGCATG ATAAACAACA TGCCCACAAT ATTTGAGGTA 420
GTGACAGGAG CAGTCAAGAA GCAGGCAAAG GAGAAGACAC CTAACAGTAG CAGCAAGAGC 480
AACAAGCCTA GTTCAAAAGT GCAGTCAAGA GCAGAGTCTC GTTCAAAGGC TAAGGTTCCC 540
AAAGATGAAG AAGAGAGCGG CGATGACGAT GGGGATGAGG AGGCGGAGGA GCACGACAAC 600
ACCCTGTGTG GAACCTGCGG AACCAATGAT GGCAAGGACC AGTTCTGGAT CTGCTGCGAT 660
AACTGCGAGA AGTGGTACCA TGGGAAGTGC GTCAAGATCA CACCTGCCCG AGCTGAGCAC 720
ATCAAGCAGT ACAAGTGCCC AGACTGCACC AACAAGAGGG CCAGGGCATG AGCGACGAGC 780
ATCCCATCGG CGACCTTGCT AGGAAGGAAG AAAGCACCCT CCTGGCGTCA AAGATCCCTA 840
GATATGGCGT AGCTCCCTAG TCTGTAAGCC TGCATTTTCA TTCATGGTTA TTATTATATC 900
TGTTCATTAG CTGTTCGACC TAGCAGTGTC TTAAAACGTG ACATGTCTCC TGTGCTGAGC 960
GTTGACATGG GCCCTCCTCC CTCTAGTCTG TAAACGCTGT CACTGAAGGT ACCTCTCAAC 1020
TGACCATTTC TTC 1034
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Zem-0054 GRMZM2G080917_P01 Zea mays 98 1e-116 416
WERAM-Sei-0012 Si002638m Setaria italica 96 8e-116 413
WERAM-Ors-0008 OS01T0887700-01 Oryza sativa 91 1e-106 382
WERAM-Orr-0011 ORUFI01G43190.1 Oryza rufipogon 91 1e-106 382
WERAM-Orp-0013 OPUNC01G38560.1 Oryza punctata 91 1e-106 382
WERAM-Orni-0011 ONIVA01G44710.1 Oryza nivara 91 1e-106 382
WERAM-Orm-0013 OMERI01G36760.1 Oryza meridionalis 91 1e-106 382
WERAM-Orgl-0011 OGLUM01G44060.1 Oryza glumaepatula 91 1e-106 382
WERAM-Org-0012 ORGLA01G0337500.1 Oryza glaberrima 91 1e-106 382
WERAM-Orb-0011 OBART01G39820.1 Oryza barthii 91 1e-106 382
WERAM-Ori-0001 BGIOSGA000361-PA Oryza indica 90 4e-106 381
WERAM-Brd-0046 BRADI2G25120.1 Brachypodium distachyon 81 2e-101 365
WERAM-Hov-0037 MLOC_37761.1 Hordeum vulgare 77 2e-97 352
WERAM-Orl-0043 KN538915.1_FGP008 Oryza longistaminata 93 2e-97 352
WERAM-Aet-0093 EMT29143 Aegilops tauschii 88 2e-97 352
WERAM-Lep-0053 LPERR05G13340.1 Leersia perrieri 79 2e-97 352
WERAM-Tra-0353 TRAES3BF138600040CFD_t1 Triticum aestivum 87 6e-97 350
WERAM-Orbr-0016 OB01G48580.1 Oryza brachyantha 90 3e-95 345
WERAM-Mua-0134 GSMUA_Achr8P32300_001 Musa acuminata 73 4e-93 338
WERAM-Pot-0079 POPTR_0006s23990.1 Populus trichocarpa 69 3e-86 315
WERAM-Viv-0068 VIT_11s0016g01500.t01 Vitis vinifera 69 2e-85 312
WERAM-Thc-0077 EOY27191 Theobroma cacao 69 2e-85 312
WERAM-Amt-0088 ERM99796 Amborella trichopoda 67 2e-84 309
WERAM-Glm-0075 GLYMA07G04040.1 Glycine max 67 3e-84 308
WERAM-Prp-0082 EMJ27202 Prunus persica 68 4e-84 308
WERAM-Sot-0014 PGSC0003DMT400012523 Solanum tuberosum 66 3e-83 305
WERAM-Arl-0138 scaffold_602145.1 Arabidopsis lyrata 65 1e-81 300
WERAM-Sol-0079 Solyc06g062850.2.1 Solanum lycopersicum 66 1e-81 300
WERAM-Art-0079 AT3G42790.1 Arabidopsis thaliana 63 2e-81 298
WERAM-Met-0117 KEH32736 Medicago truncatula 63 2e-80 295
WERAM-Brr-0102 Bra020107.1-P Brassica rapa 64 3e-79 291
WERAM-Bro-0027 Bo2g021880.1 Brassica oleracea 61 1e-78 289
WERAM-Php-0091 PP1S38_137V6.1 Physcomitrella patens 63 2e-74 276
WERAM-Sem-0105 EFJ23237 Selaginella moellendorffii 62 1e-70 263
Created Date 25-Jun-2016