WERAM Information

Tag Content
WERAM ID WERAM-Art-0079
Ensembl Protein ID AT3G42790.1
Uniprot Accession Q9M2B4; ALFL3_ARATH
Genbank Protein ID NP_189865.1
Protein Name PHD finger protein ALFIN-LIKE 3
Genbank Nucleotide ID NM_114147.4
Gene Name ALFL3;AL3At3g42790;T21C14_10
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G42790 AT3G42790.1 AT3G42790.1
Details
Type Family Domain Substrates AA References (PMIDs)
Me_Reader PHD PHD-type H3K4me3/2 K 19154204
Status Reviewed
Classification
Type Family E-value Score Start End
Me_Reader PHD 1.50e-13 51.5 195 245
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)		 Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
Domain Profile
  Me_Reader PHD
      PHD.txt   2 tiClvCgkddegekemvqCdeCddwfHlkCvklplsslpegkswyCpsCke 52 
                  t+C +Cg++d  ++++++Cd C++wfH+kCvk++  +++  k++ CpsC +
  AT3G42790.1 195 TLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSN 245
                  78****999999999*******************666664479******86 PP
Protein Sequence
(Fasta)		MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE 60
VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD AWLLSVSFYF GSRFSFHKEE 120
RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE 180
DEEIDEDDED DHGETLCGAC GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC 240
PSCSNKRARA
Nucleotide Sequence
(Fasta)		AATTCTCTTT GACCAAAAAA TAATCCAAAG ACTTAGAAGA AAAACAAGAT CGGGTCTCGT 60
CACGGTCCAC GGCGCAGCTT TTTCTTCGTC TTCTTCAATT ATTCTATTCC CTCTGAGAGA 120
TTCTCTCTGC GTTTCTTAGA TCGAGCGAGC GAAGCGAGAG ATCATGGAAG GTGGAGCTGC 180
TCTCTACAAT CCTCGAACTG TCGAAGAAGT TTTCAAGGAT TTCAAAGGTC GTCGTACTGC 240
CATTGTCAAA GCTCTCACCA CCGATGTTCA AGAGTTTTAC CAACAATGTG ACCCTGAGAA 300
GGAGAATCTT TGCTTGTATG GGTTACCGAA TGAAGAATGG GAAGTGAATT TACCAGCTGA 360
AGAAGTGCCT CCTGAGTTAC CAGAGCCAGC TCTTGGTATT AACTTTGCTA GGGATGGGCT 420
CTCTGAAAAG GAATGGCTTT CGCTTGTTGC TATTCACAGT GACGCTTGGT TACTGTCTGT 480
CTCGTTTTAC TTTGGCTCAA GGTTTTCTTT CCACAAGGAA GAGAGGAAGC GTTTGTTCAA 540
CATGATCAAT GATGTTCCTA CTATATTTGA AGTAGTGACT GGAATGGCTA AAGCAAAGGA 600
CAAGTCATCT GCTGCAAATC AAAACGGAAA CAAATCCAAG TCTAACTCTA AAGTTAGAAC 660
TTCAGAGGGA AAAAGCTCAA AGACCAAGCA GCCAAAAGAG GAGGACGAAG AAATAGATGA 720
AGATGATGAG GATGACCACG GGGAAACCCT TTGTGGAGCC TGTGGAGACA GTGATGGTGC 780
TGATGAATTC TGGATCTGCT GTGACCTTTG TGAGAAGTGG TTCCATGGCA AGTGTGTGAA 840
GATCACTCCA GCTAGAGCTG AGCATATCAA ACAATACAAG TGCCCTTCAT GCAGCAACAA 900
AAGAGCTCGA GCTTAAAAAT GTTGTATTGT AGAGAATAGC CTGTAGTGAC AACTCTCACT 960
ACCCTCGATC TGTCTTTATT TGGCTAGTCT TTTAGCTCGT TATTGGCCAT AACAGCTTGG 1020
GCCTATTTCT CTGTATAATT GGTTTGATTT TGCAACTGAG AAAAAAAAGG AAACTCTTTA 1080
ACTGAA 1087
Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0862--Zinc
KW-0863--Zinc-finger
--
Interpro

IPR021998--Alfin
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF12165--DUF3594
PF00628--PHD
Gene Ontology

GO:0005634--C:nucleus
GO:0008270--F:zinc ion binding
GO:0016568--P:chromatin modification
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0088 fgenesh2_kg.5__ 761__ AT3G42790.1 Arabidopsis lyrata 98 9e-111 396
WERAM-Thc-0077 EOY27191 Theobroma cacao 79 9e-90 327
WERAM-Viv-0068 VIT_11s0016g01500.t01 Vitis vinifera 78 8e-89 323
WERAM-Brr-0172 Bra034950.1-P Brassica rapa 81 4e-88 321
WERAM-Mua-0131 GSMUA_Achr8P30680_001 Musa acuminata 74 1e-87 320
WERAM-Pot-0079 POPTR_0006s23990.1 Populus trichocarpa 72 2e-87 319
WERAM-Amt-0088 ERM99796 Amborella trichopoda 71 3e-87 318
WERAM-Glm-0204 GLYMA16G00680.1 Glycine max 72 1e-86 316
WERAM-Bro-0060 Bo3g127230.1 Brassica oleracea 81 2e-86 316
WERAM-Prp-0082 EMJ27202 Prunus persica 70 4e-85 311
WERAM-Sol-0143 Solyc12g096040.1.1 Solanum lycopersicum 74 1e-83 306
WERAM-Met-0172 KEH18446 Medicago truncatula 72 1e-82 303
WERAM-Sot-0014 PGSC0003DMT400012523 Solanum tuberosum 71 6e-82 300
WERAM-Sei-0118 Si030765m Setaria italica 64 2e-81 299
WERAM-Brd-0009 BRADI1G21740.1 Brachypodium distachyon 66 2e-80 296
WERAM-Zem-0014 GRMZM2G016817_P02 Zea mays 66 1e-79 293
WERAM-Ors-0008 OS01T0887700-01 Oryza sativa 66 3e-79 291
WERAM-Orr-0011 ORUFI01G43190.1 Oryza rufipogon 66 3e-79 291
WERAM-Orp-0013 OPUNC01G38560.1 Oryza punctata 66 3e-79 291
WERAM-Orni-0011 ONIVA01G44710.1 Oryza nivara 66 3e-79 291
WERAM-Orm-0013 OMERI01G36760.1 Oryza meridionalis 66 3e-79 291
WERAM-Orgl-0011 OGLUM01G44060.1 Oryza glumaepatula 66 3e-79 291
WERAM-Org-0012 ORGLA01G0337500.1 Oryza glaberrima 66 3e-79 291
WERAM-Orb-0011 OBART01G39820.1 Oryza barthii 66 3e-79 291
WERAM-Sob-0124 Sb09g020610.1 Sorghum bicolor 63 3e-79 291
WERAM-Php-0090 PP1S371_53V6.1 Physcomitrella patens 69 4e-79 291
WERAM-Orbr-0088 OB07G27390.1 Oryza brachyantha 64 8e-79 290
WERAM-Ori-0001 BGIOSGA000361-PA Oryza indica 66 9e-79 290
WERAM-Aet-0106 EMT19247 Aegilops tauschii 64 3e-77 285
WERAM-Hov-0037 MLOC_37761.1 Hordeum vulgare 62 4e-77 285
WERAM-Lep-0053 LPERR05G13340.1 Leersia perrieri 64 1e-76 283
WERAM-Tra-0074 Traes_2BS_9C7CA760D.1 Triticum aestivum 65 4e-76 281
WERAM-Sem-0105 EFJ23237 Selaginella moellendorffii 66 5e-75 278
WERAM-Orl-0043 KN538915.1_FGP008 Oryza longistaminata 67 1e-71 266
Created Date 25-Jun-2016