| Tag |
Content |
| WERAM ID |
WERAM-Sot-0082 |
| Ensembl Protein ID |
PGSC0003DMT400068240 |
| Gene Name |
PGSC0003DMG400026529 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
5.60e-161 |
536.8 |
6 |
317 |
|
| Organism |
Solanum tuberosum |
| Domain Profile |
HDAC Class-I
class-1.txt 2 kvayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvge 90
k++y+yd dvg++++g +hpmkp+rl++th+Lvl+ygl+ k+e+++p+ka el++fhs +y+efl++++pe+++ +++e++++n+ge
PGSC0003DMT400068240 6 KISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVELAQFHSADYVEFLNRITPETQNLFPSEMARYNLGE 94
689************************************************************************************** PP
class-1.txt 91 dcPvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellkkhkrvlyididlhhGDgveeaf 179
dcPvfd+lfe+cq+++G++++aa++Ln+k +diainwaGGlhhakk+ asGfcy+nD+vl+ilellk+h+rvlyidid+hhGDgveeaf
PGSC0003DMT400068240 95 DCPVFDNLFEFCQIYAGGTIDAARRLNNKLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVEEAF 183
***************************************************************************************** PP
class-1.txt 180 yttdrvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefn 268
y+tdrvmtvsfhkyg++ffPgtGd++d+g+ +g++y++nvPlkdgidD s++++fk++iskv+e++ P a+vlqcGaDslagDrlg+fn
PGSC0003DMT400068240 184 YFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGSFTRLFKTIISKVVETYLPGAIVLQCGADSLAGDRLGCFN 272
***************************************************************************************** PP
class-1.txt 269 lsikghaecvkfvksfnlpllvlGGGGYtlrnvaRcwtyetavvl 313
lsi+ghaecv+fvk+fnlpllv GGGGYt++nvaRcw+ et+v+l
PGSC0003DMT400068240 273 LSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWALETGVLL 317
*******************************************97 PP
|
Protein Sequence
(Fasta) | MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLVLA YGLHSKMEVY RPHKAYPVEL 60
AQFHSADYVE FLNRITPETQ NLFPSEMARY NLGEDCPVFD NLFEFCQIYA GGTIDAARRL 120
NNKLCDIAIN WAGGLHHAKK CAASGFCYIN DLVLGILELL KYHPRVLYID IDVHHGDGVE 180
EAFYFTDRVM TVSFHKYGDK FFPGTGDMKD TGERDGRFYS INVPLKDGID DGSFTRLFKT 240
IISKVVETYL PGAIVLQCGA DSLAGDRLGC FNLSIDGHAE CVRFVKKFNL PLLVTGGGGY 300
TKENVARCWA LETGVLLDTE LPNEIPDNDY IKYFAPDYSL KLPGGHIVPP DFFIPDFDED 360
EQNPDERVNQ HTQDKHIQRD DEYYEGDHDN DNHTDDA 397Protein Fasta Sequence
>PGSC0003DMT400068240|Class-I|Solanum tuberosum
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHSKMEVYRPHKAYPVELAQFHSADYVEFLNRITPETQNLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRLNNKLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGSFTRLFKTIISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWALETGVLLDTELPNEIPDNDYIKYFAPDYSLKLPGGHIVPPDFFIPDFDEDEQNPDERVNQHTQDKHIQRDDEYYEGDHDNDNHTDDA |
Nucleotide Sequence
(Fasta) | ATGAGGTCCA AGGACAAAAT CTCCTACTTC TACGACGGTG ATGTTGGAAG CGTATACTTT 60
GGTCCGAATC ATCCAATGAA GCCGCACAGG TTGTGTATGA CTCATCATCT GGTTCTAGCA 120
TATGGACTTC ACAGCAAGAT GGAAGTTTAT AGGCCTCACA AAGCATATCC AGTGGAGCTA 180
GCGCAGTTTC ATTCTGCTGA TTATGTAGAA TTCTTGAACA GAATAACCCC AGAAACTCAG 240
AACTTGTTCC CTAGTGAAAT GGCAAGATAT AATCTTGGAG AAGATTGCCC TGTATTTGAC 300
AACTTATTCG AGTTTTGTCA AATATATGCT GGTGGAACAA TAGATGCTGC ACGTAGATTG 360
AATAATAAGC TTTGTGATAT TGCAATAAAT TGGGCTGGTG GATTGCATCA TGCCAAGAAG 420
TGTGCGGCTT CAGGATTTTG CTATATCAAT GACCTAGTTC TGGGGATATT GGAGCTTCTA 480
AAGTATCATC CGCGGGTGCT CTATATTGAT ATTGATGTGC ATCACGGTGA TGGTGTAGAA 540
GAGGCCTTTT ATTTTACTGA CAGGGTTATG ACCGTTAGTT TCCACAAGTA TGGGGATAAG 600
TTCTTTCCTG GAACTGGTGA TATGAAGGAT ACAGGGGAAA GAGATGGAAG ATTCTATTCC 660
ATAAATGTGC CTCTCAAGGA TGGAATAGAT GACGGCAGTT TCACTAGACT CTTCAAAACA 720
ATTATTTCAA AGGTTGTTGA AACATATTTA CCTGGCGCAA TAGTTCTGCA ATGTGGGGCA 780
GATTCGCTTG CTGGAGACCG TCTGGGCTGC TTCAACCTCT CCATTGATGG ACATGCTGAA 840
TGTGTAAGGT TTGTGAAGAA ATTTAATTTG CCTCTGCTGG TAACTGGAGG TGGGGGATAC 900
ACAAAAGAGA ATGTCGCCCG TTGTTGGGCT CTGGAAACCG GAGTTCTTTT AGACACAGAG 960
CTTCCTAATG AAATACCAGA CAATGATTAC ATCAAATATT TTGCCCCTGA TTATTCACTG 1020
AAGCTTCCTG GTGGACACAT AGTACCACCT GACTTTTTTA TTCCTGATTT TGATGAAGAT 1080
GAACAAAATC CAGATGAGCG TGTGAATCAG CATACCCAAG ATAAGCATAT CCAACGTGAC 1140
GATGAGTATT ATGAAGGCGA CCATGACAAT GATAACCACA CTGATGATGC CTAA
1195Nucleotide Fasta Sequence
>PGSC0003DMT400068240|Class-I|Solanum tuberosum
ATGAGGTCCAAGGACAAAATCTCCTACTTCTACGACGGTGATGTTGGAAGCGTATACTTTGGTCCGAATCATCCAATGAAGCCGCACAGGTTGTGTATGACTCATCATCTGGTTCTAGCATATGGACTTCACAGCAAGATGGAAGTTTATAGGCCTCACAAAGCATATCCAGTGGAGCTAGCGCAGTTTCATTCTGCTGATTATGTAGAATTCTTGAACAGAATAACCCCAGAAACTCAGAACTTGTTCCCTAGTGAAATGGCAAGATATAATCTTGGAGAAGATTGCCCTGTATTTGACAACTTATTCGAGTTTTGTCAAATATATGCTGGTGGAACAATAGATGCTGCACGTAGATTGAATAATAAGCTTTGTGATATTGCAATAAATTGGGCTGGTGGATTGCATCATGCCAAGAAGTGTGCGGCTTCAGGATTTTGCTATATCAATGACCTAGTTCTGGGGATATTGGAGCTTCTAAAGTATCATCCGCGGGTGCTCTATATTGATATTGATGTGCATCACGGTGATGGTGTAGAAGAGGCCTTTTATTTTACTGACAGGGTTATGACCGTTAGTTTCCACAAGTATGGGGATAAGTTCTTTCCTGGAACTGGTGATATGAAGGATACAGGGGAAAGAGATGGAAGATTCTATTCCATAAATGTGCCTCTCAAGGATGGAATAGATGACGGCAGTTTCACTAGACTCTTCAAAACAATTATTTCAAAGGTTGTTGAAACATATTTACCTGGCGCAATAGTTCTGCAATGTGGGGCAGATTCGCTTGCTGGAGACCGTCTGGGCTGCTTCAACCTCTCCATTGATGGACATGCTGAATGTGTAAGGTTTGTGAAGAAATTTAATTTGCCTCTGCTGGTAACTGGAGGTGGGGGATACACAAAAGAGAATGTCGCCCGTTGTTGGGCTCTGGAAACCGGAGTTCTTTTAGACACAGAGCTTCCTAATGAAATACCAGACAATGATTACATCAAATATTTTGCCCCTGATTATTCACTGAAGCTTCCTGGTGGACACATAGTACCACCTGACTTTTTTATTCCTGATTTTGATGAAGATGAACAAAATCCAGATGAGCGTGTGAATCAGCATACCCAAGATAAGCATATCCAACGTGACGATGAGTATTATGAAGGCGACCATGACAATGATAACCACACTGATGATGCCTAA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
