WERAM Information

Tag Content
WERAM ID WERAM-Art-0028
Ensembl Protein ID AT1G73150.1
Uniprot Accession Q9S7T1; GTE3_ARATH; Q0WSA6
Genbank Protein ID NP_177458.1
Protein Name Transcription factor GTE3, chloroplastic
Genbank Nucleotide ID NM_105973.3
Gene Name GTE3;At1g73150;F3N23.35;T18K17.19
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G73150 AT1G73150.1 AT1G73150.1
Details
Type Family Domain Substrates AA References (PMIDs)
Ac_Reader Bromodomain Bromodomain K 12466527
Status Reviewed
Classification
Type Family E-value Score Start End
Ac_Reader Bromodomain 5.00e-25 88.2 132 203
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)		 Probable transcription factor that binds to acetylated histone H3.
Domain Profile
  Ac_Reader Bromodomain
    BROMO.txt   2 ehevsepFrepvdpq.leipdYydiikePmdLstikerleegnYsspeefvkDvrlifnNakaynenkssvq 72 
                  +h+  ++F+ pvd   l ++dY++iikePmdL t+k rl +  Y+sp+ef++Dvrl fnNa+ yn+ +++v+
  AT1G73150.1 132 KHKSGWIFNTPVDVVtLGLHDYHNIIKEPMDLGTVKTRLSKSLYKSPLEFAEDVRLTFNNAMLYNPVGHDVY 203
                  7999**************************************************************999997 PP
Protein Sequence
(Fasta)		MASGPIAGGG VSKTKHKWSD SGNKSQKRSK PTVANSNSLG LEDNHQMMKI SLSSISKLEV 60
RNLKRKLQAE LEEVRSLIKR LEPQGNNFAP VPNKKLKTAN GGKKGGVHGA AADKGTVQIL 120
KSCNNLLTKL MKHKSGWIFN TPVDVVTLGL HDYHNIIKEP MDLGTVKTRL SKSLYKSPLE 180
FAEDVRLTFN NAMLYNPVGH DVYHMAEILL NLFEEKWVPL ETQYELLIRK QQPVRDIDFH 240
APVSTNTHNV EALPLPAPTP SLSPPPPPKV VENRTLERAE SMTNPVKPAV LPVVPEKLVE 300
EASANRDLTF DEKRQLSEDL QDLPYDKLEA VVQIIKKRTP ELSQQDDEIE LDIDSLDLET 360
LWELFRFVTE YKESLSKKKE EQGLDSERDA ESFHNSVHES NTLVTGLESS KVTELGHVAS 420
TVRQEVNVGG SSSSNSSSSG SGSGSSGSDS DSSGHESDTG N 461
Nucleotide Sequence
(Fasta)		CTAATCTCCC CGATCTTCGA TTCATTGTTT CAGAAATCCC CAATTACTGT CTCTGTGCGT 60
AAAATCTCTA GAGAAACCTT AAAATTTTCC GTTCAGAGAA ATTGTCAACG AAGGTAATGG 120
CGTCTGGTCC TATAGCTGGT GGTGGAGTTT CGAAGACGAA GCATAAATGG AGTGATAGTG 180
GCAACAAAAG CCAAAAACGA TCCAAGCCCA CGGTGGCGAA TTCGAATTCG CTTGGGTTGG 240
AAGATAATCA TCAGATGATG AAGATAAGTT TAAGCTCAAT TTCCAAGCTT GAAGTTAGGA 300
ACTTGAAGCG GAAACTACAA GCTGAGCTTG AGGAAGTTAG GAGCTTGATC AAACGGCTCG 360
AACCACAAGG TAACAACTTC GCTCCCGTGC CGAACAAGAA GCTGAAAACA GCAAACGGTG 420
GTAAGAAAGG TGGAGTACAT GGAGCTGCTG CTGATAAAGG TACTGTTCAG ATTTTGAAGA 480
GCTGCAACAA TTTGCTTACC AAGTTAATGA AGCATAAGTC TGGATGGATT TTCAATACTC 540
CAGTTGATGT AGTTACGCTT GGTTTACATG ATTATCACAA TATTATTAAG GAGCCTATGG 600
ATTTAGGAAC AGTGAAGACT AGGTTGAGTA AGAGTTTGTA TAAGTCACCT TTGGAGTTTG 660
CTGAGGATGT CAGACTTACT TTTAACAATG CAATGCTGTA TAATCCTGTG GGGCATGATG 720
TGTATCATAT GGCTGAGATT TTGTTGAATC TGTTTGAAGA GAAATGGGTG CCTCTTGAAA 780
CGCAGTATGA GTTACTTATT AGGAAGCAAC AACCAGTCCG TGATATCGAT TTCCATGCTC 840
CTGTTTCGAC AAACACTCAT AATGTAGAGG CGTTACCGTT ACCCGCTCCT ACACCTTCCC 900
TGTCTCCTCC TCCTCCTCCT AAAGTAGTTG AAAATAGGAC TTTGGAGAGA GCTGAATCTA 960
TGACAAACCC AGTGAAACCT GCAGTTTTAC CTGTTGTCCC CGAGAAGCTT GTAGAAGAGG 1020
CGTCTGCAAA CAGGGACTTG ACGTTTGATG AGAAGCGGCA ACTAAGTGAA GACCTCCAGG 1080
ATTTACCTTA TGACAAGCTA GAGGCAGTTG TGCAGATTAT AAAGAAGAGA ACTCCAGAAC 1140
TCTCTCAACA AGATGATGAG ATTGAGTTAG ATATTGATAG TCTTGATCTG GAAACACTTT 1200
GGGAGCTTTT CAGATTCGTG ACTGAATATA AGGAGAGCTT AAGCAAGAAA AAGGAGGAAC 1260
AGGGATTAGA CTCAGAAAGA GATGCTGAAT CTTTTCACAA TAGTGTGCAC GAATCGAACA 1320
CGCTAGTAAC TGGCCTTGAA TCGTCAAAAG TTACTGAATT AGGTCATGTG GCATCTACTG 1380
TTCGACAAGA AGTAAATGTT GGAGGATCAA GTAGTTCTAA CAGTTCTAGT AGTGGCTCAG 1440
GCTCGGGTTC TAGTGGCTCT GACAGTGATA GCTCAGGACA TGAATCTGAT ACCGGTAATT 1500
AACCACGATT GTGAAAGTAT TTAGCATAGG TGGGAGCCAT CGTGGTGTCA ACTTCCAACT 1560
TTTTTTTTTT TTTTTGCATC TCTTAAAATA GCAAAGCTAG GTTACCTTCT TTTCCACCAT 1620
CGGATTGTTT CTGTATTACT GTATTAGGGT TCTTGTTAAT TGTATAGAAA AGTGGACATA 1680
AGTCTTTTGT TTCGGGCTTG TGTCATCAAT TGAACAG 1718
Sequence Source Ensembl
Keyword

KW-0103--Bromodomain
KW-0150--Chloroplast
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0934--Plastid
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0809--Transit peptide
KW-0832--Ubl conjugation
--
Interpro

IPR001487--Bromodomain
IPR027353--NET_dom
PROSITE

PS50014--BROMODOMAIN_2
PS51525--NET
Pfam

PF17035--BET
PF00439--Bromodomain
Gene Ontology

GO:0009507--C:chloroplast
GO:0016568--P:chromatin modification
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0033 fgenesh1_pm.C_scaffold_2001298 Arabidopsis lyrata 87 4e-172 601
WERAM-Brr-0041 Bra008074.1-P Brassica rapa 61 4e-104 375
WERAM-Bro-0148 Bo8g067470.1 Brassica oleracea 56 3e-102 369
WERAM-Thc-0085 EOY13187 Theobroma cacao 52 6e-58 222
WERAM-Mua-0014 GSMUA_Achr10P27900_001 Musa acuminata 41 2e-55 214
WERAM-Glm-0152 GLYMA12G33670.1 Glycine max 53 3e-54 210
WERAM-Brd-0040 BRADI2G06910.1 Brachypodium distachyon 41 2e-53 207
WERAM-Sot-0105 PGSC0003DMT400032373 Solanum tuberosum 49 1e-52 204
WERAM-Tra-0337 TRAES3BF020300080CFD_t1 Triticum aestivum 40 3e-52 203
WERAM-Sol-0098 Solyc07g062660.2.1 Solanum lycopersicum 49 3e-52 203
WERAM-Hov-0050 MLOC_53153.2 Hordeum vulgare 39 7e-52 202
WERAM-Met-0054 KEH39252 Medicago truncatula 52 1e-51 201
WERAM-Pot-0139 POPTR_0013s12320.1 Populus trichocarpa 50 1e-51 201
WERAM-Prp-0055 EMJ15030 Prunus persica 47 2e-51 201
WERAM-Sei-0009 Si001167m Setaria italica 42 3e-50 196
WERAM-Ori-0009 BGIOSGA002990-PA Oryza indica 44 3e-50 196
WERAM-Zem-0093 GRMZM2G167718_P01 Zea mays 50 4e-50 196
WERAM-Php-0015 PP1S13_29V6.1 Physcomitrella patens 48 5e-50 196
WERAM-Viv-0121 VIT_19s0014g01650.t01 Vitis vinifera 46 9e-50 195
WERAM-Orgl-0002 OGLUM01G08180.1 Oryza glumaepatula 44 9e-49 191
WERAM-Org-0002 ORGLA01G0062500.1 Oryza glaberrima 43 2e-48 190
WERAM-Sob-0043 Sb03g001920.1 Sorghum bicolor 49 3e-48 190
WERAM-Orm-0003 OMERI01G07220.1 Oryza meridionalis 43 6e-48 189
WERAM-Orr-0002 ORUFI01G07810.1 Oryza rufipogon 43 1e-47 188
WERAM-Orni-0061 ONIVA06G15770.1 Oryza nivara 43 1e-47 187
WERAM-Orbr-0003 OB01G17270.1 Oryza brachyantha 49 2e-47 187
WERAM-Orp-0002 OPUNC01G06960.1 Oryza punctata 44 5e-47 186
WERAM-Lep-0003 LPERR01G06860.1 Leersia perrieri 48 1e-46 185
WERAM-Aet-0058 EMT09500 Aegilops tauschii 48 2e-44 177
WERAM-Orl-0094 KN540424.1_FGP004 Oryza longistaminata 49 9e-43 172
WERAM-Orb-0001 OBART01G07260.1 Oryza barthii 49 4e-42 169
WERAM-Tru-0072 TRIUR3_27288-P1 Triticum urartu 41 1e-41 168
WERAM-Amt-0025 ERN13953 Amborella trichopoda 67 2e-40 164
WERAM-Sem-0069 EFJ33224 Selaginella moellendorffii 56 2e-36 151
WERAM-Ors-0020 OS02T0250300-01 Oryza sativa 60 2e-36 150
WERAM-Tar-0033 ENSTRUP00000007860.1 Takifugu rubripes 47 9e-27 119
Created Date 25-Jun-2016