WERAM Information

Tag Content
WERAM ID WERAM-Sol-0107
Ensembl Protein ID Solyc09g009030.2.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Solyc09g009030.2 Solyc09g009030.2.1 Solyc09g009030.2.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 1.00e-28 123
Organism Solanum lycopersicum
Domain Profile
  HDAC HD2
Query: 1  MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESACLSVNIDGKKLVLGTLNS 60
          MEFWG EVKSG+P+TV P +G+++H+SQASLGE K  K E   L V +  + LVLGTL++
Sbjct: 1  MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60
Query: 61 EKVPQQQFDLVFDKDFELSHNLKSGSVYFFGYKATN 96
          E +PQ   DLVFDK+FELSH    GSVYF GYK  N
Sbjct: 61 ENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPN 96
Query: 194 DSATKTPVTDKKAKL-TTPQKTDGKKGGVHVATPHPSKQASKTPKSAGSHHCKPCNRSFG 252
           ++  K PV+ KKAK+  TPQKTD KK G         K A+++PKSA    C  C ++F 
Sbjct: 177 ETTPKAPVSAKKAKVAVTPQKTDEKKKG--------GKAANQSPKSASQVSCGSCKKTFN 228
Query: 253 SEGALESHSKAKHSAGK 269
           S  ALESH+KAKH+A K
Sbjct: 229 SGNALESHNKAKHAAAK 245
Protein Sequence
(Fasta)		MEFWGAEVKS GEPLTVQPGD GMVLHLSQAS LGELKKDKSE SACLSVNIDG KKLVLGTLNS 60
EKVPQQQFDL VFDKDFELSH NLKSGSVYFF GYKATNPFDE EEDDEDDYDD SDEDIPLTLA 120
NSGKPDPKEA GKSNAGKDSA SGKQKVRIVE PTKDDEDESS DDDGSDLGED EDDSDESEEE 180
TPKKAEPAKK RKADSATKTP VTDKKAKLTT PQKTDGKKGG VHVATPHPSK QASKTPKSAG 240
SHHCKPCNRS FGSEGALESH SKAKHSAGK 269
Nucleotide Sequence
(Fasta)		TATAAACAAG CAAACACATA GTACACCCTA GCAGTCTCTT TCTTCCTCCA TTTCTCCTCT 60
AAAACCCTAA TTTCTCTCTA AAACCCTAAA AGCAGCTATG GAGTTTTGGG GTGCTGAGGT 120
GAAAAGTGGA GAGCCATTAA CTGTACAGCC TGGAGATGGG ATGGTTTTGC ATCTTTCACA 180
GGCATCTCTA GGTGAGTTGA AGAAGGATAA ATCAGAAAGT GCCTGCTTGT CAGTGAATAT 240
TGATGGCAAG AAACTTGTTC TTGGGACACT CAACTCAGAG AAGGTGCCTC AACAGCAATT 300
TGACCTGGTT TTTGATAAAG ACTTTGAATT ATCTCACAAC TTGAAAAGTG GCAGTGTCTA 360
CTTTTTTGGA TACAAGGCAA CTAACCCGTT TGATGAGGAA GAGGATGACG AAGATGATTA 420
TGATGATTCT GATGAGGATA TCCCCCTCAC TCTTGCCAAC AGTGGTAAAC CTGACCCTAA 480
AGAGGCTGGG AAGTCTAACG CTGGAAAGGA TTCTGCTTCA GGAAAGCAGA AGGTGAGGAT 540
TGTGGAGCCT ACTAAAGATG ATGAAGATGA GAGCTCTGAT GATGATGGTT CTGACTTGGG 600
AGAGGATGAA GACGACTCTG ATGAGAGTGA GGAGGAGACA CCAAAGAAGG CTGAGCCTGC 660
AAAAAAGAGG AAGGCAGATT CAGCTACAAA AACACCTGTC ACTGATAAAA AGGCAAAATT 720
GACAACACCT CAAAAAACTG ATGGCAAAAA AGGTGGTGTC CATGTAGCAA CACCGCACCC 780
TTCTAAGCAG GCTAGTAAGA CTCCAAAATC AGCTGGATCT CATCACTGCA AGCCGTGCAA 840
CAGGAGTTTT GGTTCTGAAG GTGCTCTCGA ATCTCACTCG AAAGCTAAAC ACAGTGCTGG 900
AAAGTAAATA GACATGGAGA CATTTAGTCT TTGTTTGGTT GTTACCTATG ATCAGAAGAG 960
AGCTTTTTTA GTCGTTTTTT TCCCCGTTTC GATTTGGTTC ATCTGATGTA AAGGAAAGAT 1020
GAGTTACATC TATTATGATC TATCTCTAGG TCAATCATCT GTTTTGATGT TTAAGACTTG 1080
TTATGTTTTC AATGAGAGTT TTGGATTGAA TCAGAGAATG TTATTGCCTG TTGGTATCTT 1140
GTTATTTGGG AAAAAAAAAA CTAATGTTAA CATT 1175
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Sot-0008 PGSC0003DMT400006927 Solanum tuberosum 96 5e-112 400
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 44 2e-37 152
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 71 9e-36 147
WERAM-Prp-0078 EMJ06874 Prunus persica 55 9e-33 137
WERAM-Thc-0115 EOY33573 Theobroma cacao 52 2e-32 136
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 61 5e-30 128
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 64 1e-29 127
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 59 2e-28 123
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 53 6e-28 121
WERAM-Sei-0085 Si022778m Setaria italica 58 2e-27 120
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 46 3e-27 119
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 57 3e-27 119
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 58 6e-27 118
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 58 6e-27 118
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 60 1e-26 117
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 59 3e-26 116
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 57 3e-26 116
WERAM-Met-0051 KEH38943 Medicago truncatula 50 4e-26 115
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 58 6e-26 115
WERAM-Aet-0097 EMT09079 Aegilops tauschii 48 7e-25 111
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 56 8e-25 111
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 57 1e-24 110
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 57 2e-22 103
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 57 4e-22 102
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 57 6e-22 102
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 47 8e-22 101
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 59 2e-21 99.8
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 48 3e-19 93.2
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 48 2e-18 90.1
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 48 2e-18 90.1
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 42 6e-16 82.0
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 37 4e-12 69.3
WERAM-Amt-0052 ERN12770 Amborella trichopoda 64 6e-11 65.5
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 47 1e-08 57.8
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 29 2e-07 53.5
Created Date 25-Jun-2016