WERAM Information

Tag Content
WERAM ID WERAM-Sot-0008
Ensembl Protein ID PGSC0003DMT400006927
Gene Name PGSC0003DMG400002684
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
PGSC0003DMG400002684 PGSC0003DMT400006927 PGSC0003DMT400006927
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 7.00e-29 124
Organism Solanum tuberosum
Domain Profile
  HDAC HD2
Query: 1  MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESVCLSVNIDGKKLVLGTLNS 60
          MEFWG EVKSG+P+TV P +G+++H+SQASLGE K  K E V L V +  + LVLGTL++
Sbjct: 1  MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60
Query: 61 EKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATN 96
          E +PQ   DLVFD++FELSH    GSVYF GYK  N
Sbjct: 61 ENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPN 96
Query: 194 DSATKTPVTDKKAKL-TTPQKTDGKKGGGHVATPHPSKQASKTPKSAGSHHCKPCNRSFG 252
           ++  K PV+ KKAK+  TPQKTD KK GG        K A+++PKSA    C  C ++F 
Sbjct: 177 ETTPKAPVSAKKAKVAVTPQKTDEKKKGG--------KAANQSPKSASQVSCGSCKKTFN 228
Query: 253 SEGALDSHSKAKHSAGK 269
           S  AL+SH+KAKH+A K
Sbjct: 229 SGNALESHNKAKHAAAK 245
Protein Sequence
(Fasta)		MEFWGAEVKS GEPLTVQPGD GMVLHLSQAS LGELKKDKSE SVCLSVNIDG KKLVLGTLNS 60
EKVPQQQFDL VFDRDFELSH NLKSGSVYFF GYKATNPFEE EEDDEDDYDE SDEDIPLTLA 120
NSGKPEPKEA GKSNAGKDSA SGKQKVRIVE PTKDDEDESS DDDDSEMGED EDDSDDSEEE 180
TPKKAEPAKK RKADSATKTP VTDKKAKLTT PQKTDGKKGG GHVATPHPSK QASKTPKSAG 240
SHHCKPCNRS FGSEGALDSH SKAKHSAGK 269
Nucleotide Sequence
(Fasta)		CACAAAATAC CCTAGCAGTC TCTCTCTTCC TCCATTTCTC TTCTAAAACC CTAATTTCTC 60
TCTAAAACCC TAAAAGCAGC TATGGAGTTT TGGGGTGCTG AGGTGAAAAG TGGAGAGCCC 120
TTAACTGTAC AGCCTGGAGA TGGGATGGTT TTGCATCTTT CACAGGCATC TCTAGGTGAG 180
TTGAAGAAGG ATAAATCAGA AAGTGTCTGC TTGTCAGTGA ATATTGATGG CAAGAAACTT 240
GTTCTTGGGA CACTCAACTC AGAGAAGGTG CCTCAACAGC AATTTGACCT GGTTTTTGAT 300
AGAGACTTTG AATTATCACA CAACTTGAAA AGTGGCAGTG TCTACTTTTT TGGATACAAG 360
GCAACTAACC CGTTTGAGGA GGAAGAGGAT GACGAAGATG ATTATGATGA GTCTGATGAG 420
GACATCCCCC TCACTCTTGC AAACAGTGGT AAACCTGAGC CTAAAGAGGC TGGGAAGTCT 480
AATGCTGGAA AGGATTCTGC TTCAGGAAAG CAGAAGGTGA GGATTGTGGA GCCTACTAAA 540
GATGATGAAG ATGAGAGCTC TGATGATGAT GATTCTGAAA TGGGAGAGGA TGAAGACGAC 600
TCTGATGACA GTGAGGAGGA GACGCCAAAG AAGGCTGAGC CTGCAAAAAA GAGGAAGGCA 660
GATTCAGCTA CAAAAACACC CGTCACCGAT AAAAAGGCAA AATTGACAAC ACCTCAAAAA 720
ACTGATGGCA AAAAAGGTGG TGGCCATGTA GCAACACCGC ACCCTTCAAA ACAGGCTAGT 780
AAGACTCCAA AATCAGCTGG ATCTCATCAC TGCAAGCCGT GCAACAGGAG TTTTGGTTCT 840
GAAGGTGCTC TCGATTCTCA CTCGAAAGCT AAACACAGTG CTGGAAAGTA AATAGACATG 900
GAGACATTTG GTCTTTGTTT GGTTGTCAAC TATGATCAGA AGAGAGCTTT TTAGTTGTTT 960
TTTTTCCCGT TTCGGTTGGT TCATCTGATG TAAAGGAAAG ATGAGTTACA TCTATTGCTA 1020
TGGTGAACTA TCATCTATCT CTAGGTCAAT CATCTATTTT GATGTTTAAG ACGTTATGTT 1080
TTCAATGAGT TTTGGATTGA ATCAGAGAAT GTTATTGCCT GTTGGTAACT TGTTATATGT 1140
TGTTACAAGT AATTGGATTA TTGCTACTTT GAG 1174
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Sol-0107 Solyc09g009030.2.1 Solanum lycopersicum 96 6e-112 400
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 71 5e-36 148
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 44 6e-36 148
WERAM-Thc-0115 EOY33573 Theobroma cacao 54 3e-33 139
WERAM-Prp-0078 EMJ06874 Prunus persica 55 7e-33 137
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 63 4e-31 132
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 62 7e-29 124
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 59 1e-28 124
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 46 5e-28 122
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 62 7e-28 121
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 57 2e-27 120
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 57 3e-27 119
WERAM-Sei-0085 Si022778m Setaria italica 56 7e-27 118
WERAM-Met-0051 KEH38943 Medicago truncatula 51 7e-27 118
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 46 1e-26 117
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 46 1e-26 117
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 55 1e-25 114
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 57 1e-25 114
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 56 3e-25 112
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 48 1e-24 110
WERAM-Aet-0097 EMT09079 Aegilops tauschii 48 1e-24 110
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 55 5e-24 108
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 49 8e-23 104
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 54 1e-21 100
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 55 2e-21 100
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 55 2e-21 99.8
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 57 9e-21 97.8
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 47 1e-19 94.4
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 49 4e-19 92.4
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 49 4e-19 92.4
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 42 4e-16 82.4
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 37 2e-12 70.1
WERAM-Amt-0052 ERN12770 Amborella trichopoda 62 9e-11 64.7
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 44 6e-08 55.5
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 29 1e-07 54.3
Created Date 25-Jun-2016