WERAM Information

Tag Content
WERAM ID WERAM-Sei-0085
Ensembl Protein ID Si022778m
Gene Name SETIT_022778mg
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Si022778m.g Si022778m Si022778m
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 5.00e-24 108
HDAC HD2 1.00e-22 103
Organism Setaria italica
Domain Profile
  HDAC HD2
Query: 1  MEFWGLEVKPGTTVKCEPGEGYILHLSQAALGE--SKKSDNALMYVKVDDQKLAIGTLSL 58
          MEFWG+EVK G  V   P EG ++H+SQA+LGE  +KK +   ++VKV +Q L +GTLS 
Sbjct: 1  MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60
Query: 59 DKYPQIQFDLVFDKEFELSHTSKAASVFFSGYK 91
          +  PQ+  DLVFDKEFELSHT    SV+F GYK
Sbjct: 61 ENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 93
Query: 206 PTPKKPEGGKKRAAENALKTPVSDKKAKVATPSGQKTGGKKGVTHVATPHPAKKTPANND 265
           PTPKKP   KKRA E   K PVS KKAKVA  + QKT  KK     A   P         
Sbjct: 163 PTPKKPASSKKRANETTPKAPVSAKKAKVAV-TPQKTDEKKKGGKAANQSP--------- 212
Query: 266 XXXXXXXXXXXXVPCKSCSKTFNSEMALQAHSKAKHGA 303
                       V C SC KTFNS  AL++H+KAKH A
Sbjct: 213 -------KSASQVSCGSCKKTFNSGNALESHNKAKHAA 243
  HDAC HD2
Query: 1  MEFWGLEVKPGTTVKCEPGEGYILHLSQAALGESKKS-DNALMYVKVDDQKLAIGTLSLD 59
          MEFWG+ V P    K  P E  ++H+SQA+L  + KS ++ ++ V V   KL IGTLS D
Sbjct: 1  MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60
Query: 60 KYPQIQFDLVFDKEFELSHTSKAASVFFSGYK 91
          K+PQI FDLVFDKEFELSH+   A+V F GYK
Sbjct: 61 KFPQISFDLVFDKEFELSHSGTKANVHFIGYK 92
Query: 207 TPKKPEG-GKKRAAENALKTPVS-----DKKAKVATPSGQKTGGKKGVTHVATPHPAKK 259
           TPKKPE   KKR  E+  KTPVS        A  +TP  QKT  KK   H ATPHPAKK
Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTP--QKTEEKKKGGHTATPHPAKK 255
Protein Sequence
(Fasta)		MEFWGLEVKP GTTVKCEPGE GYILHLSQAA LGESKKSDNA LMYVKVDDQK LAIGTLSLDK 60
YPQIQFDLVF DKEFELSHTS KAASVFFSGY KVEQPGEGDE MDFDSEEDED EEEELENPVI 120
KANGKAGAKE DQKSQGKAGA AASKSSAAVK DVEMKSKDDD DSDEDETDDS DDDDLSAAEG 180
DDDDSSDEGD SSEDDEDSEE EEEETPTPKK PEGGKKRAAE NALKTPVSDK KAKVATPSGQ 240
KTGGKKGVTH VATPHPAKKT PANNDKSKEK SPKSGGSVPC KSCSKTFNSE MALQAHSKAK 300
HGAK 304
Nucleotide Sequence
(Fasta)		ATCGTCCGGC GGCTTAAACC CTAGGTTCTT CCATCGCCGC GACTGCTCCG CCCCCGCCGC 60
CGTCGCCGAT GGAGTTCTGG GGTCTTGAAG TCAAGCCTGG AACCACTGTT AAGTGTGAGC 120
CTGGTGAAGG CTATATCCTG CACCTTTCCC AGGCTGCTCT TGGGGAATCA AAGAAAAGTG 180
ACAATGCTTT GATGTATGTC AAGGTTGATG ATCAGAAGCT AGCCATTGGT ACCCTGTCAC 240
TTGACAAATA CCCCCAAATC CAATTTGATT TGGTATTTGA CAAAGAGTTT GAGCTGTCAC 300
ACACCTCAAA AGCTGCCAGT GTGTTCTTCT CTGGTTACAA GGTTGAGCAA CCTGGTGAGG 360
GAGATGAAAT GGATTTTGAT TCTGAAGAAG ATGAAGATGA GGAGGAAGAG CTGGAAAATC 420
CAGTAATCAA GGCAAATGGC AAAGCTGGAG CAAAGGAGGA TCAGAAAAGT CAAGGGAAGG 480
CAGGGGCTGC AGCTTCAAAA TCAAGTGCTG CTGTAAAGGA TGTTGAAATG AAAAGCAAGG 540
ATGATGATGA CAGTGATGAG GATGAGACTG ATGATTCTGA TGATGATGAT TTATCTGCTG 600
CGGAAGGCGA TGATGATGAC TCTAGCGATG AGGGTGATTC CAGTGAGGAT GATGAGGACA 660
GTGAAGAGGA GGAGGAAGAA ACTCCAACTC CCAAGAAGCC AGAGGGAGGC AAGAAGAGAG 720
CAGCCGAGAA TGCTCTGAAA ACACCCGTTT CTGATAAGAA AGCGAAGGTC GCCACACCGT 780
CTGGCCAAAA GACAGGTGGC AAGAAGGGTG TTACCCATGT GGCAACTCCA CACCCAGCAA 840
AAAAGACCCC TGCGAACAAT GACAAGTCTA AGGAGAAGTC CCCGAAATCC GGTGGTTCTG 900
TACCGTGCAA ATCATGCAGC AAGACATTCA ACAGCGAGAT GGCTCTGCAG GCTCACTCCA 960
AGGCCAAGCA TGGCGCTAAG TGAGAGACCT CTGATAGGAT TGGTGCCTTA TTAGAGTCTG 1020
GAAAGAAATG TGGGTGGTAG TAGGCCTTGC CTGGCCTTCT TATTTTGTTA AAGAGACGTG 1080
TCTAGTGGTG GATTATGTGA TTGATGCGTT CGTGTCGAGA CTCGAATGCT GCAAAACATG 1140
GCTCTCGTGA ATTTAATATT TTTGGTTGTT CGGCTGGTAG CATTGGTAAT TGTTGAATCT 1200
ACC 1204
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 78 8e-51 197
WERAM-Zem-0062 GRMZM2G100146_P01 Zea mays 80 5e-49 191
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 85 2e-43 173
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 85 2e-43 173
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 84 9e-43 171
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 81 6e-39 158
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 84 1e-36 150
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 84 1e-36 150
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 81 3e-36 149
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 73 1e-35 147
WERAM-Aet-0097 EMT09079 Aegilops tauschii 74 2e-35 147
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 70 8e-35 144
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 75 4e-31 132
WERAM-Mua-0006 GSMUA_Achr10P04780_001 Musa acuminata 65 5e-30 129
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 58 6e-28 122
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 58 2e-27 120
WERAM-Thc-0115 EOY33573 Theobroma cacao 56 2e-27 120
WERAM-Sol-0107 Solyc09g009030.2.1 Solanum lycopersicum 58 2e-27 120
WERAM-Sot-0008 PGSC0003DMT400006927 Solanum tuberosum 56 9e-27 118
WERAM-Prp-0078 EMJ06874 Prunus persica 58 3e-26 116
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 62 6e-26 115
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 54 1e-25 114
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 59 2e-25 113
WERAM-Met-0051 KEH38943 Medicago truncatula 57 4e-25 112
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 56 2e-24 110
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 53 2e-24 110
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 56 7e-24 108
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 50 9e-24 108
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 48 1e-22 104
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 51 1e-19 94.4
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 51 1e-19 94.0
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 39 8e-17 85.1
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 40 5e-14 75.9
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 41 5e-11 65.9
WERAM-Amt-0052 ERN12770 Amborella trichopoda 62 2e-09 60.5
Created Date 25-Jun-2016