WERAM Information

Tag Content
WERAM ID WERAM-Sob-0127
Ensembl Protein ID Sb09g026730.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb09g026730 Sb09g026730.1 Sb09g026730.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 3.00e-22 102
Organism Sorghum bicolor
Domain Profile
  HDAC HD2
Query: 1  MEFWGLEVKPGSTVKCEPGHGFILHLSQAALGESKK--SDNALMYVKVDDQKLAIGTLSI 58
          MEFWG+EVK G  +  +PG   ++H+SQ ALGESK   ++   +YV V   KL IGTLS 
Sbjct: 1  MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTVGSDKLLIGTLSH 60
Query: 59 DKFPQVQFDLVFDKEFELSHTSKTTSVFFSGYKVE 93
          +KFPQ+  ++V ++ F LSHT K  SVFFSGYKV+
Sbjct: 61 EKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 95
Query: 212 RPAE--NSLTPLSDKKAKVATPSAQKTGGKKGAVHVATPHPAKGKTPANNDXXXXXXXXX 269
           R AE  +S  P S+KKAK  TP  QKT  KK  VHVATPHP+K +   N+          
Sbjct: 200 RSAEPNSSKNPASNKKAKFVTP--QKTDSKKPHVHVATPHPSK-QAGKNSGGGSTGETSK 256
Query: 270 XXXVP-------CKSCTKTFNSEMALQAHSKAKHGA 298
               P       CKSCT+TF SEM LQ+H+KAKH A
Sbjct: 257 QQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 292
Protein Sequence
(Fasta)		MEFWGLEVKP GSTVKCEPGH GFILHLSQAA LGESKKSDNA LMYVKVDDQK LAIGTLSIDK 60
FPQVQFDLVF DKEFELSHTS KTTSVFFSGY KVEQPMEEDE MDLDSEDEEE LDVPVIKENG 120
KADGKEQKSQ EKAVAAASKS SLVSKKSKDD DDSDEDETDD SDSDDTDDSD EGEGLSPEEG 180
DDDDSSDEDD TSDDEEEETP TPKKKPEAGK KRPAENSLTP LSDKKAKVAT PSAQKTGGKK 240
GAVHVATPHP AKGKTPANND KSKEKSPKSG GSVPCKSCTK TFNSEMALQA HSKAKHGAK 299
Nucleotide Sequence
(Fasta)		CTCCGTCTCT TTCCAGCACT GTCCTTCCCT TACCGGCGGC TTAAACCCTA GTTCCCATTC 60
CCCGTCGCCG CCTCAGCGCC GCCGCCGATG GAGTTCTGGG GTCTTGAGGT CAAGCCTGGA 120
TCCACTGTTA AGTGTGAGCC TGGACATGGC TTTATCCTGC ACCTTTCGCA GGCTGCTCTC 180
GGGGAATCAA AGAAAAGTGA CAATGCCTTG ATGTACGTCA AAGTCGACGA TCAGAAGCTT 240
GCCATTGGAA CCCTCTCTAT TGACAAGTTT CCGCAAGTAC AATTCGATTT GGTTTTCGAT 300
AAAGAGTTTG AGCTGTCGCA CACATCAAAA ACTACCAGTG TGTTCTTCTC TGGTTACAAG 360
GTTGAGCAGC CAATGGAGGA AGACGAAATG GATCTTGATT CTGAAGATGA GGAGGAGCTG 420
GACGTTCCTG TAATCAAGGA AAATGGCAAA GCTGATGGGA AGGAGCAGAA AAGTCAAGAG 480
AAGGCAGTTG CCGCAGCTTC AAAATCAAGT CTTGTTTCTA AGAAAAGCAA GGATGATGAT 540
GATTCTGATG AGGATGAGAC TGATGATTCT GATTCTGATG ATACCGATGA TTCTGATGAG 600
GGTGAGGGAT TATCTCCTGA AGAAGGCGAT GACGATGATT CAAGTGATGA GGATGATACA 660
AGTGACGATG AGGAGGAAGA AACTCCAACT CCTAAGAAGA AGCCAGAGGC AGGCAAGAAG 720
AGACCTGCTG AAAATTCCCT GACTCCTCTT TCTGATAAGA AAGCTAAGGT TGCCACACCG 780
TCAGCCCAGA AGACAGGTGG CAAGAAGGGC GCCGTCCATG TGGCAACTCC ACACCCAGCA 840
AAAGGCAAGA CCCCTGCAAA CAATGATAAA TCAAAGGAGA AGTCTCCAAA ATCTGGTGGC 900
TCGGTCCCTT GCAAATCTTG CACCAAGACT TTCAACAGTG AGATGGCACT TCAGGCTCAC 960
TCGAAGGCGA AGCATGGTGC CAAGTGAGTC GCAGGTACAA CTGAGTCTTC GAAGGCGAAG 1020
CATGGGAGGT TTAAGTGAGT CTGGAAAAAA TGTCGGTGGA AGTAGGCCTG GCCTTGTTTT 1080
GTTTAGAGAC TAGTGGCTAT GTGATTGTGG TAGATGCAGC AAAACAAGGC TGTGGTGTGT 1140
GAACTTTAAT ATTCTGGGTT GCCCAGCTGG TAGTATTTGG ATTTGTGTTG TGCTGCGAAT 1200
TGATCGTTTT TTCGCCTTGG TGATATAGTA GCATGGTCCT TTGTCGCATT GGCTCAGCAT 1260
TCTATTTCTT GGAAACTGTC GTGCTTTTCT GTTTTTGTTT GAACCCTTGG TTATGCACCC 1320
TCGCCAGGAC TATGAGCACA AGTCCAGTCC AGCAAAGCAA ATCAAGCACC TTGCTCATGC 1380
AGGCTACCCA AAACCCACAA GGTCCTGTTT GGATACAAAG TATTTTTTTT TGGAGTTTTA 1440
GAAAAATACC ATGGTTGTAT GAAATACTTT GATTTAGAAT GTCACAAAGT GTTT 1495
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Zem-0062 GRMZM2G100146_P01 Zea mays 84 1e-53 207
WERAM-Sei-0085 Si022778m Setaria italica 83 7e-50 194
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 85 6e-43 171
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 85 6e-43 171
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 73 2e-42 170
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 81 1e-38 157
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 86 3e-36 149
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 86 3e-36 149
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 74 2e-35 146
WERAM-Aet-0097 EMT09079 Aegilops tauschii 75 3e-35 145
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 80 4e-35 145
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 72 8e-35 144
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 68 2e-32 137
WERAM-Mua-0006 GSMUA_Achr10P04780_001 Musa acuminata 61 5e-29 125
WERAM-Sol-0107 Solyc09g009030.2.1 Solanum lycopersicum 58 5e-27 118
WERAM-Thc-0115 EOY33573 Theobroma cacao 57 8e-27 118
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 56 1e-26 117
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 57 2e-26 117
WERAM-Sot-0008 PGSC0003DMT400006927 Solanum tuberosum 56 2e-26 116
WERAM-Prp-0078 EMJ06874 Prunus persica 59 1e-25 114
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 54 9e-25 111
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 59 9e-25 111
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 53 3e-24 109
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 57 4e-24 109
WERAM-Met-0051 KEH38943 Medicago truncatula 47 8e-24 108
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 51 1e-23 107
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 55 2e-23 106
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 49 4e-23 105
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 55 4e-23 105
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 53 2e-19 94.0
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 53 2e-19 94.0
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 40 2e-16 83.6
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 38 3e-12 69.7
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 43 2e-10 64.3
WERAM-Amt-0052 ERN12770 Amborella trichopoda 62 2e-09 60.1
Created Date 25-Jun-2016