WERAM Information

Tag Content
WERAM ID WERAM-Sot-0024
Ensembl Protein ID PGSC0003DMT400021644
Gene Name PGSC0003DMG400008398
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
PGSC0003DMG400008398 PGSC0003DMT400021644 PGSC0003DMT400021644
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 2.00e-26 116
Organism Solanum tuberosum
Domain Profile
  HDAC HD2
Query: 1  MEFWGAEVKSGQPLSVQPGDDMILHLSQASLGEVKKDKGSEPVCLSVTIDGKKLVLGTLS 60
          MEFWG EVK+G+PL + PG D ++H+SQ +LGE  K+  +EP+ L VT+   KL++GTLS
Sbjct: 1  MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLS 59
Query: 61 SDKLPQQQFDLVFDRDFELSHNWKNGSIYFFGYK 94
           +K PQ   ++V +R+F LSH WKNGS++F GYK
Sbjct: 60 HEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYK 93
Query: 205 SAAKTPVPDKKTKFLTPQKTDGKKGAVHVATPHPSKQAGKTPG-------NKPNQTPKSG 257
           +++K P  +KK KF+TPQKTD KK  VHVATPHPSKQAGK  G       +K  QTPKS 
Sbjct: 205 NSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSA 264
Query: 258 GSLACKTCNRTFGSENALESHSKAKHSVG 286
           G+  CK+C RTF SE  L+SH+KAKHS  
Sbjct: 265 GAFGCKSCTRTFTSEMGLQSHTKAKHSAA 293
Protein Sequence
(Fasta)		MEFWGAEVKS GQPLSVQPGD DMILHLSQAS LGEVKKDKGS EPVCLSVTID GKKLVLGTLS 60
SDKLPQQQFD LVFDRDFELS HNWKNGSIYF FGYKAANPFE DEEDVDEDED ESDEEIPLTI 120
ANNGKTEAKA IAKDSASTKQ KVRVVEFSKV AKAEDGDEST DESADEDDSM MGEDEEGDSD 180
EDQSDESEEG TPKKAEPSRK RPADSAAKTP VPDKKTKFLT PQKTDGKKGA VHVATPHPSK 240
QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK AKHSVGK 287
Nucleotide Sequence
(Fasta)		CGCTTATATA AACCTAAAAC ACTTGCGGAC CCTAAATTGC TTCCATTGCT CACTCTCTGC 60
TAAAACCCTA GATTTTTTTT TTCTATCTTC TTCTCAATCA GCAATGGAAT TTTGGGGTGC 120
GGAGGTGAAA AGTGGACAAC CTTTATCTGT ACAGCCTGGA GATGACATGA TTTTGCATCT 180
TTCACAGGCA TCTCTTGGTG AGGTGAAAAA GGATAAAGGA TCAGAACCTG TATGCTTGTC 240
TGTAACTATT GATGGCAAGA AGCTTGTTCT TGGCACACTC AGCTCAGATA AGCTGCCTCA 300
ACAACAATTT GACCTGGTTT TTGATAGAGA CTTTGAACTA TCACACAACT GGAAAAATGG 360
TAGCATCTAC TTTTTTGGAT ACAAGGCTGC CAACCCATTT GAGGATGAGG AGGATGTAGA 420
TGAAGATGAA GATGAGTCTG ATGAGGAAAT ACCCCTCACA ATTGCAAACA ATGGAAAGAC 480
TGAAGCCAAG GCTATTGCAA AGGATTCTGC TTCAACTAAG CAGAAGGTGA GGGTTGTAGA 540
ATTTAGTAAA GTTGCAAAGG CGGAAGATGG AGATGAGAGC ACTGATGAGT CTGCGGATGA 600
AGATGATTCT ATGATGGGGG AGGATGAAGA AGGTGATAGT GATGAAGATC AGTCTGATGA 660
AAGTGAGGAG GGGACACCAA AGAAGGCTGA ACCTAGCAGA AAGAGACCTG CAGATTCTGC 720
TGCAAAGACA CCTGTTCCCG ATAAAAAGAC AAAATTCTTA ACTCCTCAAA AGACTGATGG 780
TAAGAAAGGT GCTGTCCATG TGGCAACCCC TCACCCCTCA AAACAGGCTG GTAAGACTCC 840
CGGAAACAAG CCAAACCAGA CTCCAAAATC TGGCGGATCT CTTGCCTGCA AGACATGCAA 900
CAGGACTTTT GGTTCTGAAA ATGCTCTGGA ATCTCACTCG AAAGCTAAGC ACAGCGTTGG 960
AAAGTAAATA GGAGTAGAAA CATCTGCCTG GAGATCTGGT TTCGTTTTCT CAAACGTTGG 1020
AGGGAATGAT AATCAGAAGA GAGTGTTAGC TTTTAGAATA TTGTTGGTTG ACCCTAATGA 1080
ATGTAAAGCA AGAGTTAGGT CCAGTTTTGC TACTTATTGG TATTTTGTAT CGAGGGGAAC 1140
TATCTCTGGG TACTAGTGAA GGTTTATTTT TATTTTGACT GTTGTTTACT TGTTTTGGTT 1200
GATATTCTAT TCAAATTAAT GGTTATTACC TATTTGGTAT TTTGCTACGT GC 1253
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 85 2e-120 429
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 51 3e-55 212
WERAM-Thc-0115 EOY33573 Theobroma cacao 51 7e-55 211
WERAM-Prp-0078 EMJ06874 Prunus persica 50 2e-52 203
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 47 6e-46 181
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 73 7e-41 164
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 63 9e-32 134
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 53 4e-30 129
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 58 2e-28 123
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 58 2e-28 123
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 61 2e-28 123
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 58 3e-28 122
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 58 3e-28 122
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 60 1e-27 121
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 59 2e-27 120
WERAM-Bro-0186 Bo9g181760.1 Brassica oleracea 56 5e-27 119
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 56 5e-27 119
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 59 8e-27 118
WERAM-Sei-0085 Si022778m Setaria italica 56 2e-26 116
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 59 3e-26 116
WERAM-Aet-0097 EMT09079 Aegilops tauschii 50 4e-26 115
WERAM-Met-0051 KEH38943 Medicago truncatula 48 7e-26 115
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 51 1e-24 111
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 59 5e-24 108
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 57 5e-24 108
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 59 8e-24 108
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 59 1e-23 107
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 59 2e-19 93.2
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 50 4e-19 92.8
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 50 4e-19 92.4
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 41 1e-15 81.3
WERAM-Amt-0052 ERN12770 Amborella trichopoda 71 2e-13 73.6
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 36 3e-13 73.2
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 42 3e-10 63.2
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 30 7e-07 52.0
Created Date 25-Jun-2016