WERAM Information

Tag Content
WERAM ID WERAM-Bro-0186
Ensembl Protein ID Bo9g181760.1
Gene Name HD2C
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo9g181760 Bo9g181760.1 Bo9g181760.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 1.00e-37 153
Organism Brassica oleracea
Domain Profile
  HDAC HD2
Query: 36  MEFWGVEVKSGSPLRVDAEEEMIVHISLAALGEKKNGGNEPVRLYMKVGDQKLVIGTLSH 95
           MEFWGVEVK+G PL +D   + +VHIS  ALGE KN   EP++LY+ VG  KL+IGTLSH
Sbjct: 1   MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTVGSDKLLIGTLSH 60
Query: 96  DKCPQLCTEIVLERSFELSHSWKDGSVFFSGYRVDAHX----XXXXXXXXXXXXXXVTKS 151
           +K PQL TEIVLER+F LSH+WK+GSVFFSGY+VDA                      KS
Sbjct: 61  EKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASDPEPEDLIDDQLEAAGFKAAPKS 120
Query: 152 GVKQVNFQLPN 162
             KQVNFQLPN
Sbjct: 121 AAKQVNFQLPN 131
Query: 248 FVTPQKSESKKPHVHVATPHPXXXXXXXXXXXXXXXXXXXXXX-XXANAFGCSSCNRTFT 306
           FVTPQK++SKKPHVHVATPHP                         A AFGC SC RTFT
Sbjct: 218 FVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFT 277
Query: 307 SEMGLQSHTKAKHSGVA 323
           SEMGLQSHTKAKHS  A
Sbjct: 278 SEMGLQSHTKAKHSAAA 294
Protein Sequence
(Fasta)		GHLTRRPKSS NRSRLLLEPF SPVASVAVSS LPIVSMEFWG VEVKSGSPLR VDAEEEMIVH 60
ISLAALGEKK NGGNEPVRLY MKVGDQKLVI GTLSHDKCPQ LCTEIVLERS FELSHSWKDG 120
SVFFSGYRVD AHESDSESDD DEPAEPAVTK SGVKQVNFQL PNDDAKAEED DEEDDSDDDE 180
DDDDSEDEEE EKKVTAEVEE DDDDEDSSDD EEDDSSDEET PEKKVEEAKK RPAEATTSKT 240
ASNKKAKFVT PQKSESKKPH VHVATPHPSK GGKSSGSNGE SSKQQQQQTP KSANAFGCSS 300
CNRTFTSEMG LQSHTKAKHS GVA 323
Nucleotide Sequence
(Fasta)		GGTCACCTTA CTCGTCGCCC TAAAAGCTCT AACCGCTCTC GTCTTCTTCT AGAACCTTTC 60
TCTCCCGTCG CATCCGTCGC CGTCAGCTCG TTACCGATCG TGTCAATGGA GTTCTGGGGT 120
GTTGAGGTTA AGAGTGGCTC ACCACTTAGG GTGGATGCTG AGGAGGAGAT GATTGTGCAC 180
ATCTCACTGG CTGCTCTAGG CGAGAAGAAG AACGGTGGAA ACGAGCCGGT CAGGCTCTAC 240
ATGAAAGTCG GAGACCAGAA GCTTGTGATT GGGACGCTGT CACACGATAA GTGCCCTCAG 300
CTCTGCACGG AGATTGTGCT GGAGAGGAGT TTTGAGCTGT CTCATAGTTG GAAGGATGGG 360
AGCGTTTTCT TCTCTGGCTA CAGAGTTGAT GCTCATGAAT CTGATTCTGA GTCTGATGAT 420
GATGAGCCTG CTGAGCCAGC TGTTACGAAA TCAGGTGTGA AGCAGGTGAA CTTTCAGTTG 480
CCTAATGACG ATGCCAAGGC CGAGGAAGAT GATGAGGAGG ACGATAGTGA TGATGATGAG 540
GATGATGACG ACTCTGAGGA TGAGGAGGAA GAAAAGAAGG TTACTGCTGA AGTTGAAGAG 600
GACGATGATG ACGAAGACTC ATCTGACGAT GAGGAAGATG ACTCATCAGA TGAGGAGACC 660
CCTGAGAAGA AGGTTGAAGA AGCCAAGAAG AGGCCTGCGG AAGCCACCAC CTCGAAGACT 720
GCTTCAAACA AGAAGGCTAA GTTCGTAACT CCTCAGAAAT CAGAATCGAA GAAGCCACAC 780
GTCCACGTTG CGACTCCGCA TCCGTCAAAG GGAGGAAAGA GCTCTGGAAG CAATGGAGAG 840
TCGTCGAAGC AGCAGCAGCA GCAGACACCA AAGTCCGCAA ATGCATTTGG GTGCAGCTCC 900
TGCAACAGAA CGTTTACTTC GGAGATGGGC TTGCAGTCGC ACACCAAGGC CAAACACAGT 960
GGAGTTGCTT GA 973
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0050 Bra009513.1-P Brassica rapa 76 1e-77 287
WERAM-Art-0114 AT5G03740.1 Arabidopsis thaliana 59 2e-37 153
WERAM-Arl-0026 fgenesh1_pg.C_scaffold_6000249 Arabidopsis lyrata 64 9e-32 134
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 59 6e-29 125
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 60 2e-28 123
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 56 2e-26 116
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 53 2e-25 114
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 55 2e-25 113
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 55 5e-25 112
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 55 5e-25 112
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 55 7e-25 112
WERAM-Thc-0115 EOY33573 Theobroma cacao 52 2e-24 110
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 50 2e-23 107
WERAM-Sei-0085 Si022778m Setaria italica 54 2e-23 106
WERAM-Met-0051 KEH38943 Medicago truncatula 55 4e-23 106
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 54 2e-22 103
WERAM-Aet-0097 EMT09079 Aegilops tauschii 51 6e-22 102
WERAM-Zem-0062 GRMZM2G100146_P01 Zea mays 52 1e-21 101
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 49 1e-21 101
WERAM-Prp-0078 EMJ06874 Prunus persica 51 1e-21 100
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 52 4e-21 99.4
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 52 2e-20 97.1
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 51 1e-19 94.7
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 53 2e-19 94.0
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 53 2e-19 94.0
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 46 3e-18 90.1
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 42 5e-17 85.9
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 46 2e-16 84.0
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 46 2e-16 84.0
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 50 2e-15 80.1
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 41 6e-13 72.4
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 38 3e-12 69.7
WERAM-Amt-0052 ERN12770 Amborella trichopoda 53 2e-09 60.5
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 29 1e-07 55.1
Created Date 25-Jun-2016