WERAM Information

Tag Content
WERAM ID WERAM-Org-0014
Ensembl Protein ID ORGLA01G0351500.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ORGLA01G0351500 ORGLA01G0351500.1 ORGLA01G0351500.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 9.00e-18 87
HDAC HD2 4.00e-17 85
Organism Oryza glaberrima
Domain Profile
  HDAC HD2
Query: 5   MGFWGVAVRPGETVMCDPPGEFYYHISQIALEPG-ELNENVQVFVEVDGKRILLGTLSVE 63
           M FWGVAV P       P  +   HISQ +L+   +  E+V + V V G ++++GTLS +
Sbjct: 1   MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60
Query: 64  HRPQLSIDLVFEKEFELLHTSKTYNIFFSGYQAADARRSDSPTEEGDESDEEVPLAIP 121
             PQ+S DLVF+KEFEL H+    N+ F GY++ +  + D  + +    DE+VP A+P
Sbjct: 61  KFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDFTSSD----DEDVPEAVP 114
  HDAC HD2
Query: 5  MGFWGVAVRPGETVMCDPPGEFYYHISQIALEPGELNENV----QVFVEVDGKRILLGTL 60
          M FWGV V+ G+ +  DP  +   HISQ+AL  GE   NV    Q++V V   ++L+GTL
Sbjct: 1  MEFWGVEVKNGKPLHLDPGLDRLVHISQVAL--GESKNNVTEPIQLYVTVGSDKLLIGTL 58
Query: 61 SVEHRPQLSIDLVFEKEFELLHTSKTYNIFFSGYQ 95
          S E  PQLS ++V E+ F L HT K  ++FFSGY+
Sbjct: 59 SHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYK 93
Protein Sequence
(Fasta)		METTMGFWGV AVRPGETVMC DPPGEFYYHI SQIALEPGEL NENVQVFVEV DGKRILLGTL 60
SVEHRPQLSI DLVFEKEFEL LHTSKTYNIF FSGYQAADAR RSDSPTEEGD ESDEEVPLAI 120
PLFPNSDDDK IKEVQNSPSK FATLKSAAAA SPTPEAIVEE RNNYGKSEAD DDDSDEESDA 180
SGEDEYDDDE DMIDKQDSSD DDGDSSDEEE TPSKV 215
Nucleotide Sequence
(Fasta)		ATGGAGACGA CCATGGGATT CTGGGGAGTT GCTGTCAGAC CTGGAGAGAC AGTGATGTGT 60
GATCCACCAG GAGAATTCTA TTATCATATT TCACAGATAG CGTTAGAGCC TGGTGAGCTG 120
AATGAGAACG TGCAAGTTTT TGTTGAAGTT GATGGTAAAA GGATTCTGCT CGGCACACTT 180
TCAGTTGAAC ATCGTCCTCA GTTGTCAATT GATCTGGTGT TTGAAAAGGA GTTTGAGTTA 240
CTGCATACCT CAAAGACCTA CAACATCTTC TTTTCTGGCT ACCAAGCTGC GGATGCGAGA 300
AGATCTGACT CTCCTACTGA AGAAGGTGAT GAATCTGATG AGGAGGTTCC ACTGGCTATT 360
CCACTATTCC CCAATTCAGA TGATGATAAG ATCAAAGAAG TTCAAAACAG TCCAAGTAAG 420
TTTGCCACAC TTAAGTCTGC TGCTGCTGCA TCCCCTACAC CAGAGGCTAT TGTAGAGGAA 480
AGAAATAATT ATGGGAAATC AGAAGCTGAT GATGATGACA GCGATGAAGA AAGTGATGCT 540
TCAGGCGAGG ATGAATATGA TGATGATGAG GATATGATTG ATAAACAGGA TTCTAGTGAT 600
GATGATGGTG ATAGTTCGGA TGAAGAAGAG ACTCCTTCAA AGGTGTGA 649
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 73 3e-62 235
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 42 4e-27 118
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 46 4e-25 111
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 50 1e-24 110
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 47 6e-24 107
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 47 6e-24 107
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 49 1e-23 107
WERAM-Sei-0085 Si022778m Setaria italica 48 4e-23 105
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 45 2e-21 99.4
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 37 3e-21 99.0
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 49 2e-20 96.3
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 38 2e-20 95.9
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 49 2e-20 95.9
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 46 3e-20 95.5
WERAM-Aet-0097 EMT09079 Aegilops tauschii 45 4e-20 95.1
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 45 9e-20 94.0
WERAM-Met-0051 KEH38943 Medicago truncatula 43 2e-19 93.2
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 45 1e-18 90.5
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 46 1e-18 90.5
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 46 4e-18 88.6
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 49 4e-18 88.6
WERAM-Thc-0115 EOY33573 Theobroma cacao 45 1e-17 87.4
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 45 1e-17 87.0
WERAM-Art-0126 AT5G22650.1 Arabidopsis thaliana 40 1e-17 87.0
WERAM-Prp-0078 EMJ06874 Prunus persica 44 2e-17 86.3
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 47 2e-17 85.9
WERAM-Sot-0008 PGSC0003DMT400006927 Solanum tuberosum 42 2e-16 82.8
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 39 2e-16 82.8
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 42 3e-16 82.4
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 45 5e-16 81.6
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 45 5e-16 81.6
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 43 7e-16 81.3
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 37 1e-15 80.5
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 40 1e-13 73.6
WERAM-Amt-0052 ERN12770 Amborella trichopoda 42 2e-08 56.6
Created Date 25-Jun-2016