WERAM Information

Tag Content
WERAM ID WERAM-Orb-0013
Ensembl Protein ID OBART01G41240.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
OBART01G41240 OBART01G41240.1 OBART01G41240.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 6.00e-15 78
Organism Oryza barthii
Domain Profile
  HDAC HD2
Query: 1  MEFWGIEVKPGKAVSFNVDDECVIHISQVALGETKKA-GSENVVVSVKV--DGKKTVIGN 57
          MEFWGIE+KPGK       D  ++H SQV LG+ +K    E   V VK+  D    +IGN
Sbjct: 1  MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGN 60
Query: 58 LSAKNHPQFMCDLFIGNDFELSHSSKTTSVFL 89
          LS K  PQF  DL++G++FE+SH+S T+SV+L
Sbjct: 61 LSQK-FPQFSIDLYLGHEFEISHNS-TSSVYL 90
Protein Sequence
(Fasta)		MEFWGIEVKP GKAVSFNVDD ECVIHISQVA LGETKKAGSE NVVVSVKVDG KKTVIGNLSA 60
KNHPQFMCDL FIGNDFELSH SSKTTSVFLC DEDENMSDIC DIMGKHLGRP VAEEGKKDNS 120
DDGMDLSSSD DDDDSLDSSS SDDDDDESGD EDDGSDELPA EMESSEEEDG SDGQDESSSS 180
MVSTDEEDES DEEDEIPEKP ESSKLTAAGS TLSSGKKSKT ATHFGQKTGH LVVINHSGLI 240
RRQDIQPSEL LVACLTAAAF ASKMIL 266
Nucleotide Sequence
(Fasta)		ATGGAATTCT GGGGTATTGA AGTGAAGCCA GGAAAGGCTG TTTCATTTAA CGTTGATGAT 60
GAGTGTGTGA TTCACATATC ACAGGTTGCA CTGGGAGAAA CAAAGAAGGC GGGAAGTGAG 120
AATGTAGTTG TATCTGTTAA AGTTGATGGC AAGAAGACAG TTATTGGAAA TCTATCGGCT 180
AAAAATCATC CTCAATTTAT GTGTGATTTG TTTATTGGCA ATGACTTTGA GCTTTCACAC 240
AGTTCAAAGA CTACTAGTGT CTTCCTGTGT GATGAAGATG AAAACATGTC TGACATCTGT 300
GACATTATGG GTAAACATCT GGGAAGGCCT GTTGCAGAGG AAGGTAAAAA GGATAATTCT 360
GATGATGGTA TGGACTTGTC CTCATCTGAT GATGATGATG ATTCTTTGGA CTCGTCCTCA 420
TCCGATGATG ATGATGATGA GTCAGGTGAT GAGGATGATG GATCTGATGA GTTACCAGCA 480
GAAATGGAGT CCAGTGAAGA AGAGGATGGG AGTGATGGGC AGGATGAATC ATCTTCATCG 540
ATGGTGTCCA CTGATGAAGA GGATGAAAGT GATGAGGAAG ATGAAATTCC TGAGAAACCT 600
GAGAGCAGCA AGCTGACAGC TGCTGGATCT ACACTTTCTT CTGGTAAGAA GTCAAAGACT 660
GCAACACACT TTGGCCAGAA AACAGGGCAT TTAGTAGTGA TAAATCACTC CGGTCTCATC 720
AGAAGGCAAG ACATCCAGCC AAGTGAACTA CTGGTGGCAT GTTTGACTGC AGCTGCTTTT 780
GCTTCAAAGA TGATCCTCTA A 802
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 100 3e-67 252
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 100 3e-67 252
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 66 2e-27 119
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 66 5e-27 118
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 57 7e-23 104
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 57 2e-22 103
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 57 2e-22 103
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 56 8e-22 101
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 49 1e-20 97.4
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 56 3e-20 95.9
WERAM-Pot-0109 POPTR_0009s15160.1 Populus trichocarpa 50 8e-20 94.7
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 54 2e-19 93.6
WERAM-Mua-0006 GSMUA_Achr10P04780_001 Musa acuminata 49 3e-19 92.4
WERAM-Brr-0167 Bra034373.1-P Brassica rapa 52 6e-19 91.7
WERAM-Aet-0097 EMT09079 Aegilops tauschii 43 6e-19 91.7
WERAM-Sei-0085 Si022778m Setaria italica 50 8e-19 91.3
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 50 2e-18 90.5
WERAM-Prp-0078 EMJ06874 Prunus persica 51 2e-18 89.7
WERAM-Bro-0080 Bo4g164870.1 Brassica oleracea 51 4e-18 89.0
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 46 8e-18 87.8
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 48 9e-18 87.8
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 51 9e-18 87.8
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 48 2e-17 87.0
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 47 9e-17 84.7
WERAM-Thc-0115 EOY33573 Theobroma cacao 47 2e-16 83.2
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 46 5e-16 82.0
WERAM-Met-0051 KEH38943 Medicago truncatula 47 3e-15 79.7
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 45 9e-15 77.8
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 50 2e-14 76.6
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 41 4e-13 72.4
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 40 1e-12 70.9
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 42 3e-12 69.7
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 34 1e-08 57.4
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 48 6e-07 52.0
Created Date 25-Jun-2016