WERAM Information

Tag Content
WERAM ID WERAM-Bro-0080
Ensembl Protein ID Bo4g164870.1
Gene Name HDT4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo4g164870 Bo4g164870.1 Bo4g164870.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 1.00e-27 119
Organism Brassica oleracea
Domain Profile
  HDAC HD2
Query: 1   MEFWGIEIKPGKPTKVEQEDGYMIHVSQIAIGEFNKVG-DKTVQVFVKVGGGDKQKLLIG 59
           MEFWGIEIKPGKP KV Q+DG+M+H SQ+ +G+  KV  D+T  V+VK+G  D+   +IG
Sbjct: 1   MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGD-DENGFMIG 59
Query: 60  NLSQKVPQVPLDLLFEQDFEVSHECKSSSVYLLGYKTVDPMDGELNSDFDSEDEDIPMDM 119
           NLSQK PQ  +DL    +FE+SH   +SSVYL+GY+T D  D EL+ + DS+ E   +D 
Sbjct: 60  NLSQKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRTFDAFD-ELDEEIDSDSE---LDE 114
Query: 120 F-RSELEKSKANRLNGQKANLXXXXXXXXXXXXXXXXXXXXXXXXTPVKVEPPNKKRP 176
           +   ++     N +N  + +                          P+KV PP+KK P
Sbjct: 115 YMEQQIAALPQNEIN-PEEDDESDSDEMGLDEDDDSSDEEDVEAEAPLKVAPPSKKMP 171
Protein Sequence
(Fasta)		MEFWGIEIKP GKPTKVEQED GYMIHVSQIA IGEFNKVGDK TVQVFVKVGG GDKQKLLIGN 60
LSQKVPQVPL DLLFEQDFEV SHECKSSSVY LLGYKTVDPM DGELNSDFDS EDEDIPMDMF 120
RSELEKSKAN RLNGQKANLE DDESDSDEMG SDEDEDDSEE EEDTPVKVEP PNKKRPNGGA 180
TNNNNTVASK KAKVANQQGG HKGHKCGGVH PPKRN 215
Nucleotide Sequence
(Fasta)		ATGGAGTTTT GGGGTATTGA GATTAAGCCT GGAAAGCCCA CCAAGGTGGA ACAAGAAGAT 60
GGGTATATGA TCCATGTCTC TCAGATTGCA ATTGGTGAGT TCAACAAGGT TGGAGATAAG 120
ACTGTTCAGG TCTTTGTGAA GGTTGGTGGT GGTGATAAGC AAAAGCTTCT CATCGGAAAC 180
CTCTCTCAGA AGGTTCCTCA AGTTCCTCTT GATCTCTTGT TCGAGCAAGA TTTTGAGGTC 240
TCACATGAGT GCAAAAGCTC CAGTGTCTAT CTTCTTGGTT ACAAGACCGT TGATCCTATG 300
GATGGTGAGC TCAACTCTGA TTTTGATTCA GAGGATGAGG ATATTCCCAT GGATATGTTT 360
CGAAGTGAAT TGGAGAAATC AAAGGCCAAT AGGCTGAATG GTCAAAAGGC CAACCTTGAA 420
GATGATGAAT CTGACTCTGA TGAGATGGGT TCGGATGAGG ATGAGGATGA CTCAGAAGAA 480
GAAGAGGATA CACCTGTAAA GGTTGAGCCT CCGAACAAGA AAAGACCAAA TGGTGGAGCA 540
ACGAACAACA ACAACACAGT TGCATCAAAG AAAGCCAAAG TTGCAAATCA GCAAGGAGGG 600
CATAAGGGGC ACAAGTGCGG CGGTGTTCAT CCTCCAAAAA GAAATTAG 649
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0167 Bra034373.1-P Brassica rapa 94 1e-80 296
WERAM-Art-0046 AT2G27840.1 Arabidopsis thaliana 44 2e-27 119
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 47 3e-26 115
WERAM-Arl-0035 fgenesh1_pm.C_scaffold_4000660 Arabidopsis lyrata 57 3e-25 112
WERAM-Prp-0078 EMJ06874 Prunus persica 45 7e-25 110
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 45 7e-24 107
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 48 6e-23 104
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 49 4e-22 102
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 49 4e-22 102
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 50 4e-22 102
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 48 1e-21 100
WERAM-Met-0051 KEH38943 Medicago truncatula 44 1e-21 100
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 44 3e-21 99.0
WERAM-Sot-0008 PGSC0003DMT400006927 Solanum tuberosum 47 5e-21 98.2
WERAM-Sei-0085 Si022778m Setaria italica 48 6e-21 97.8
WERAM-Thc-0115 EOY33573 Theobroma cacao 47 1e-20 97.1
WERAM-Sol-0107 Solyc09g009030.2.1 Solanum lycopersicum 46 2e-20 96.7
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 50 5e-20 94.7
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 44 6e-20 94.7
WERAM-Aet-0097 EMT09079 Aegilops tauschii 50 7e-20 94.4
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 51 6e-19 91.3
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 51 6e-19 91.3
WERAM-Orb-0013 OBART01G41240.1 Oryza barthii 51 1e-18 90.5
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 53 2e-18 89.4
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 51 4e-17 85.5
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 49 4e-17 85.1
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 43 8e-17 84.3
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 43 2e-15 79.3
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 34 6e-15 78.2
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 47 1e-14 77.0
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 43 1e-14 76.6
WERAM-Amt-0052 ERN12770 Amborella trichopoda 52 3e-10 62.4
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 31 2e-09 59.7
WERAM-Orm-0015 OMERI01G38270.1 Oryza meridionalis 28 4e-06 48.9
Created Date 25-Jun-2016