| Tag |
Content |
| WERAM ID |
WERAM-Aim-0104 |
| Ensembl Protein ID |
ENSAMEP00000010054.1 |
| Gene Name |
JMJD1C |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-IV |
3.70e-167 |
555 |
31 |
317 |
| HDAC |
Class-I |
6.60e-25 |
88.4 |
30 |
309 |
|
| Organism |
Ailuropoda melanoleuca |
| Domain Profile |
HDAC Class-IV
class-4.txt 1 leklhpfdaskwkkvikflkeeklledealveareaskedllvvhtrkylkslksslkvatiteiplvaflpnflvqrkvlrplrlqag 89
leklhpfda+kw+kvi flkeekll+d++lveareas+edllvvhtr+yl++lk+s++vatiteip+v+flpnflvqrkvl+plr+q+g
ENSAMEP00000010054.1 31 LEKLHPFDAGKWGKVISFLKEEKLLSDGMLVEAREASDEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLRTQTG 119
79*************************************************************************************** PP
class-4.txt 90 GtilaaklaverGwainvGGGfhhcsserGGGfcayaditlaikflferlkaisrviiidldahqGnGherdfaddkrvyildvynrei 178
Gti+a+kla+erGwainvGGGfhhcss+rGGGfcayaditlaikflfer+++isr++i+dldahqGnGherdf++dkrvyi+dvynr+i
ENSAMEP00000010054.1 120 GTIMAGKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVDLDAHQGNGHERDFMGDKRVYIMDVYNRHI 208
***************************************************************************************** PP
class-4.txt 179 ypkdrvakeairrkvelesgtedeeylekleralkkslqefepdlvvynaGtdvleGdrlGalkispegivkrdevvfrlvrakdipiv 267
yp+dr+ak+airrkvele+gted+eyl+k+er+l+k+lqe+ pd++vynaGtd+leGdrlG+l+isp+givkrde+vfr+vr +++pi+
ENSAMEP00000010054.1 209 YPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNLQKALQEHLPDVLVYNAGTDILEGDRLGGLSISPQGIVKRDELVFRVVRGRQVPIL 297
***************************************************************************************** PP
class-4.txt 268 mvtsGGyqkrsarviadsil 287
mvtsGGyqkr+ar+iadsil
ENSAMEP00000010054.1 298 MVTSGGYQKRTARIIADSIL 317
******************95 PP
HDAC Class-I
class-1.txt 15 hygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflk.kvepenaeelskelkkfnvgedcPvfdglfeyc 102
++ hp ++ + +++ + +l + +v++++as e+ll +h+ y++ lk + + + +e++ + + v ++ +
ENSAMEP00000010054.1 30 GLEKLHPFDAGKWGKVISFLKEEKLLSDGMLVEAREASDEDLLVVHTRRYLNELKwSFAVATITEIPPVIFLP----NFLVQRKVLKPL 114
5566777888888888888888888888889999999999999999999999997244555666666444333....334555566666 PP
class-1.txt 103 qlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellk...khkrvlyididlhhGDgveeafyttdrvmtv 188
++ tG+++ a kL e+ ain GG+hh ++ Gfc Di lai l +r + +d+d h G+g e f +rv +
ENSAMEP00000010054.1 115 RTQTGGTIMAG-KLA-MERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFErveGISRATIVDLDAHQGNGHERDFMGDKRVYIM 201
899****9865.555.46789*****************************99987222467999**********************987 PP
class-1.txt 189 sfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghae. 276
+ y+ + +Pg + + + v l+ g +D++y +++ ++k ++ + P+++v + G+D l gDrlg ++s +g+ +
ENSAMEP00000010054.1 202 DV--YNRHIYPGDRFAK-QAIRR------KVELEWGTEDDEYLDKVERNLQKALQEHLPDVLVYNAGTDILEGDRLGGLSISPQGIVKr 281
66..88889**964333.33333......489*****************************************************9876 PP
class-1.txt 277 ...cvkfvksfnlpllvlGGGGYtlrnva 302
+ ++v+ ++p+l++ GGY++r a
ENSAMEP00000010054.1 282 delVFRVVRGRQVPILMVTSGGYQKRT-A 309
66678999***************9874.4 PP
|
Protein Sequence
(Fasta) | RPHTTQLYQH VPETRWPIVY SPRYNITFMG LEKLHPFDAG KWGKVISFLK EEKLLSDGML 60
VEAREASDED LLVVHTRRYL NELKWSFAVA TITEIPPVIF LPNFLVQRKV LKPLRTQTGG 120
TIMAGKLAME RGWAINVGGG FHHCSSDRGG GFCAYADITL AIKFLFERVE GISRATIVDL 180
DAHQGNGHER DFMGDKRVYI MDVYNRHIYP GDRFAKQAIR RKVELEWGTE DDEYLDKVER 240
NLQKALQEHL PDVLVYNAGT DILEGDRLGG LSISPQGIVK RDELVFRVVR GRQVPILMVT 300
SGGYQKRTAR IIADSILNLY SLGLIGSESP RVSAQNSDTP LLPPEVP 347Protein Fasta Sequence
>ENSAMEP00000010054.1|Class-I|Ailuropoda melanoleuca
RPHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVISFLKEEKLLSDGMLVEAREASDEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLKPLRTQTGGTIMAGKLAMERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIVDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNLQKALQEHLPDVLVYNAGTDILEGDRLGGLSISPQGIVKRDELVFRVVRGRQVPILMVTSGGYQKRTARIIADSILNLYSLGLIGSESPRVSAQNSDTPLLPPEVP |
Nucleotide Sequence
(Fasta) | AGGCCACACA CAACTCAGCT GTACCAGCAT GTGCCGGAGA CACGCTGGCC CATCGTGTAT 60
TCACCACGCT ACAACATAAC CTTCATGGGC CTGGAGAAAC TGCATCCCTT TGACGCGGGA 120
AAATGGGGCA AAGTGATCAG CTTCCTGAAA GAAGAGAAGC TCCTGTCAGA TGGCATGCTG 180
GTGGAGGCGC GGGAGGCTTC GGACGAGGAC CTGTTGGTGG TGCACACGAG ACGCTATCTC 240
AACGAGCTGA AGTGGTCCTT TGCTGTTGCG ACCATCACAG AGATCCCCCC TGTCATCTTC 300
CTCCCCAACT TCCTTGTGCA GAGGAAGGTG CTGAAGCCTC TTCGGACCCA GACAGGAGGA 360
ACCATCATGG CAGGGAAGCT GGCCATGGAG CGAGGCTGGG CCATCAATGT GGGTGGCGGC 420
TTCCACCACT GCTCCAGTGA CCGGGGCGGG GGCTTCTGCG CCTACGCGGA CATCACACTG 480
GCCATCAAGT TTCTGTTTGA GCGAGTAGAA GGCATCTCCA GAGCCACGAT CGTTGATCTC 540
GATGCCCATC AGGGCAACGG GCATGAACGG GACTTCATGG GTGACAAGCG TGTGTACATC 600
ATGGATGTCT ACAACCGCCA CATCTACCCC GGGGACCGCT TTGCCAAGCA GGCCATCAGG 660
CGGAAGGTGG AGCTGGAGTG GGGCACGGAG GATGATGAGT ACCTGGACAA AGTGGAGCGG 720
AACCTCCAGA AAGCCCTCCA GGAGCACCTG CCCGATGTCC TGGTGTACAA CGCGGGCACC 780
GACATCCTGG AGGGGGACCG CCTTGGGGGG CTGTCCATCA GCCCACAGGG CATCGTGAAG 840
CGGGATGAAC TGGTGTTCCG GGTGGTCCGG GGCCGCCAGG TGCCCATCCT CATGGTGACC 900
TCGGGTGGGT ACCAGAAGCG CACGGCCCGC ATCATTGCCG ACTCCATCCT TAATCTGTAC 960
AGCCTCGGGC TCATCGGCTC CGAGTCCCCC AGAGTCTCGG CCCAGAACTC AGACACACCT 1020
CTGCTGCCCC CGGAGGTGCC CTGA
1045Nucleotide Fasta Sequence
>ENSAMEP00000010054.1|Class-I|Ailuropoda melanoleuca
AGGCCACACACAACTCAGCTGTACCAGCATGTGCCGGAGACACGCTGGCCCATCGTGTATTCACCACGCTACAACATAACCTTCATGGGCCTGGAGAAACTGCATCCCTTTGACGCGGGAAAATGGGGCAAAGTGATCAGCTTCCTGAAAGAAGAGAAGCTCCTGTCAGATGGCATGCTGGTGGAGGCGCGGGAGGCTTCGGACGAGGACCTGTTGGTGGTGCACACGAGACGCTATCTCAACGAGCTGAAGTGGTCCTTTGCTGTTGCGACCATCACAGAGATCCCCCCTGTCATCTTCCTCCCCAACTTCCTTGTGCAGAGGAAGGTGCTGAAGCCTCTTCGGACCCAGACAGGAGGAACCATCATGGCAGGGAAGCTGGCCATGGAGCGAGGCTGGGCCATCAATGTGGGTGGCGGCTTCCACCACTGCTCCAGTGACCGGGGCGGGGGCTTCTGCGCCTACGCGGACATCACACTGGCCATCAAGTTTCTGTTTGAGCGAGTAGAAGGCATCTCCAGAGCCACGATCGTTGATCTCGATGCCCATCAGGGCAACGGGCATGAACGGGACTTCATGGGTGACAAGCGTGTGTACATCATGGATGTCTACAACCGCCACATCTACCCCGGGGACCGCTTTGCCAAGCAGGCCATCAGGCGGAAGGTGGAGCTGGAGTGGGGCACGGAGGATGATGAGTACCTGGACAAAGTGGAGCGGAACCTCCAGAAAGCCCTCCAGGAGCACCTGCCCGATGTCCTGGTGTACAACGCGGGCACCGACATCCTGGAGGGGGACCGCCTTGGGGGGCTGTCCATCAGCCCACAGGGCATCGTGAAGCGGGATGAACTGGTGTTCCGGGTGGTCCGGGGCCGCCAGGTGCCCATCCTCATGGTGACCTCGGGTGGGTACCAGAAGCGCACGGCCCGCATCATTGCCGACTCCATCCTTAATCTGTACAGCCTCGGGCTCATCGGCTCCGAGTCCCCCAGAGTCTCGGCCCAGAACTCAGACACACCTCTGCTGCCCCCGGAGGTGCCCTGA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
