WERAM Information


Tag Content
WERAM ID WERAM-Bro-0132
Ensembl Protein ID Bo7g095520.1
Gene Name HDA2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo7g095520 Bo7g095520.1 Bo7g095520.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-IV 1.90e-150 501.6 89 374
HDAC Class-I 7.60e-25 89.6 77 365
Organism Brassica oleracea
Domain Profile
  HDAC Class-IV

   class-4.txt   1 leklhpfdaskwkkvikflkeeklledealveareaskedllvvhtrkylkslksslkvatiteiplvaflpnflvqrkvlrplrlqagGtilaakl 97 
+eklhpfd++kw++v+kfl+++ +le++++ve+ eas++dllvvh+ +yl+slkss++va+ite+p+vaf+pnflvq+kvl p+r+q+gGtilaakl
Bo7g095520.1 89 IEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITEVPPVAFFPNFLVQQKVLSPFRKQVGGTILAAKL 185
79*********************************************************************************************** PP
class-4.txt 98 averGwainvGGGfhhcsserGGGfcayaditlaikflferlkaisrviiidldahqGnGherdfaddkrvyildvynreiypkdrvakeairrkve 194
averGwainvGGGfhhc++erGGGfca+adi+l+i+f+f rl isrv+iidldahqGnGhe+d+ dd+rvyild+yn+eiyp d+ a+++i++kve
Bo7g095520.1 186 AVERGWAINVGGGFHHCTAERGGGFCAFADISLCIHFAFLRLS-ISRVMIIDLDAHQGNGHETDLGDDSRVYILDMYNPEIYPYDYSARRFIDQKVE 281
*****************************************98.***************************************************** PP
class-4.txt 195 lesgtedeeylekleralkkslqefepdlvvynaGtdvleGdrlGalkispegivkrdevvfrlvrakdipivmvtsGGyqkrsarviadsil 287
++sgt ++eyl+kl++al+ + +f+p++vvynaGtd+l+Gd+lG lkisp+gi++rde+vfr++r++++p+vm+tsGGy+k++arviadsi+
Bo7g095520.1 282 VRSGTSTDEYLRKLDKALEVAFLNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSRDEKVFRVAREREVPVVMLTSGGYMKSNARVIADSIE 374
*******************************************************************************************95 PP

  HDAC Class-I

   class-1.txt   4 ayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfe 100
y d++ + +++ hp ++++ + +++++ g ++ +iv+p +as ++ll +hs +y++ lk++ + + + + + v +++ +
Bo7g095520.1 77 IYSSAYDISFMGIEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITE---VPPVAFFPNFLVQQKVLS 170
5667778888889999*************************************************98765444333...333333445566666666 PP
class-1.txt 101 ycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlail.ellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge 195
+ G+++ aak L e+ ain GG+hh ++ Gfc Di l i +l+ + +rv+ id+d h G+g e + +rv + y++
Bo7g095520.1 171 PFRKQVGGTILAAK-LA-VERGWAINVGGGFHHCTAERGGGFCAFADISLCIHfAFLRlSISRVMIIDLDAHQGNGHETDLGDDSRVYIL--DMYNP 263
66677788886664.44.45678***************************9963455559***************************986..56899 PP
class-1.txt 196 effPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghae....cvkfvksfnlpl 288
e +P + ++ v ++ g ++y + + + ++ + f+Pe+vv + G+D l gD+lg ++s +g+++ + ++ ++ ++p+
Bo7g095520.1 264 EIYP-------YDYSARRFIDQKVEVRSGTSTDEYLRKLDKALEVAFLNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSrdekVFRVAREREVPV 353
7777.......445556777778999***99888988899999*********************************998643344899999****** PP
class-1.txt 289 lvlGGGGYtlrn 300
++l GGY + n
Bo7g095520.1 354 VMLTSGGYMKSN 365
********9887 PP

Protein Sequence
(Fasta)
MKDVRVVSTW TDLTRDSAVY LLFTFSAIKV SQFIYRCFQS SETSSFSMET HPEALRRERI 60
LSSKLYFNVP ETKVSIIYSS AYDISFMGIE KLHPFDSTKW RRVCKFLVSD GFLEEKSIVE 120
PLEASNSDLL VVHSLNYLNS LKSSATVARI TEVPPVAFFP NFLVQQKVLS PFRKQVGGTI 180
LAAKLAVERG WAINVGGGFH HCTAERGGGF CAFADISLCI HFAFLRLSIS RVMIIDLDAH 240
QGNGHETDLG DDSRVYILDM YNPEIYPYDY SARRFIDQKV EVRSGTSTDE YLRKLDKALE 300
VAFLNFQPEM VVYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRVARERE VPVVMLTSGG 360
YMKSNARVIA DSIENLSRQG LIKTQLDSAS T 391
Nucleotide Sequence
(Fasta)
ATGAAAGATG TCCGAGTTGT CTCGACGTGG ACCGATTTAA CTCGTGACTC AGCTGTTTAC 60
TTGCTATTCA CGTTTTCCGC CATCAAAGTC TCCCAATTTA TCTACCGTTG CTTTCAATCA 120
TCCGAAACGT CATCGTTCTC GATGGAGACT CACCCAGAAG CTCTTAGGCG AGAGCGGATT 180
CTCTCCAGCA AACTCTACTT CAACGTCCCC GAAACAAAGG TTTCGATCAT CTATTCATCA 240
GCATACGACA TCTCCTTCAT GGGGATTGAG AAGTTGCATC CGTTTGATTC AACCAAGTGG 300
CGTAGAGTTT GCAAGTTCCT TGTTTCTGAT GGGTTCTTGG AGGAGAAATC AATCGTTGAG 360
CCTCTAGAAG CTTCCAACAG TGATCTTCTA GTGGTACATT CGTTGAACTA CTTAAACAGT 420
TTGAAAAGCA GTGCAACTGT CGCTAGGATA ACCGAGGTTC CACCAGTTGC TTTCTTCCCA 480
AACTTTCTTG TGCAGCAGAA GGTTCTTAGC CCATTCCGGA AGCAGGTTGG TGGGACGATT 540
CTGGCAGCTA AACTTGCAGT GGAACGTGGA TGGGCAATAA ACGTAGGAGG AGGTTTTCAT 600
CATTGTACTG CTGAAAGAGG AGGCGGGTTT TGTGCTTTCG CTGATATTTC TCTTTGTATT 660
CACTTTGCTT TTCTTCGTCT TAGCATCTCC AGGGTTATGA TAATAGATCT TGATGCTCAT 720
CAAGGGAATG GCCATGAAAC AGATCTTGGG GATGATAGTC GTGTTTACAT TCTGGATATG 780
TACAATCCTG AGATATACCC TTACGATTAT AGTGCTAGAA GATTTATCGA TCAGAAGGTT 840
GAAGTGAGGA GCGGGACCAG CACTGATGAG TATTTGAGGA AGCTAGATAA AGCGCTTGAG 900
GTTGCTTTCC TAAACTTCCA ACCAGAGATG GTAGTTTACA ATGCTGGAAC CGATATCTTA 960
GACGGAGACC CTCTGGGGCT TCTAAAGATA AGCCCTGATG GTATAACAAG TAGAGACGAG 1020
AAAGTCTTCA GAGTTGCAAG GGAGAGAGAG GTTCCTGTTG TGATGCTGAC TTCAGGCGGG 1080
TACATGAAGT CCAACGCCAG AGTTATTGCG GATTCCATAG AGAATCTCTC ACGTCAAGGG 1140
TTAATCAAGA CACAACTGGA CTCAGCTTCC ACGTGA 1177
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0052 Bra009877.1-P Brassica rapa 99 0.0 713
WERAM-Arl-0095 fgenesh2_kg.6__ 2585__ AT5G26040.2 Arabidopsis lyrata 87 0.0 701
WERAM-Art-0129 AT5G26040.2 Arabidopsis thaliana 86 0.0 699
WERAM-Pot-0080 POPTR_0006s24640.1 Populus trichocarpa 71 1e-157 553
WERAM-Viv-0015 VIT_04s0008g00910.t01 Vitis vinifera 77 3e-153 538
WERAM-Thc-0103 EOY29884 Theobroma cacao 72 4e-153 538
WERAM-Glm-0229 GLYMA17G34770.1 Glycine max 73 2e-151 532
WERAM-Met-0014 AES59273 Medicago truncatula 72 3e-150 528
WERAM-Sol-0102 Solyc08g065350.2.1 Solanum lycopersicum 72 3e-150 528
WERAM-Orgl-0063 OGLUM06G20210.1 Oryza glumaepatula 72 4e-147 518
WERAM-Ors-0058 OS06T0571100-01 Oryza sativa 72 2e-146 516
WERAM-Orni-0064 ONIVA06G22840.1 Oryza nivara 72 2e-146 516
WERAM-Ori-0066 BGIOSGA021002-PA Oryza indica 72 2e-146 516
WERAM-Org-0062 ORGLA06G0157900.1 Oryza glaberrima 72 2e-146 516
WERAM-Orb-0065 OBART06G18360.1 Oryza barthii 72 2e-146 516
WERAM-Orr-0066 ORUFI06G20130.1 Oryza rufipogon 72 3e-146 515
WERAM-Brd-0021 BRADI1G37510.1 Brachypodium distachyon 72 4e-146 514
WERAM-Tra-0321 Traes_7DL_86EEFA04E.2 Triticum aestivum 70 9e-144 507
WERAM-Sei-0028 Si006784m Setaria italica 69 1e-143 506
WERAM-Sob-0134 Sb10g022550.1 Sorghum bicolor 68 3e-141 498
WERAM-Zem-0011 GRMZM2G008425_P01 Zea mays 68 5e-141 498
WERAM-Mua-0015 GSMUA_Achr10P28050_001 Musa acuminata 71 2e-140 496
WERAM-Orbr-0073 OB06G26590.1 Oryza brachyantha 68 5e-134 474
WERAM-Prp-0064 EMJ26901 Prunus persica 69 3e-132 469
WERAM-Orm-0062 OMERI06G19350.1 Oryza meridionalis 66 7e-132 467
WERAM-Aet-0055 EMT26973 Aegilops tauschii 61 2e-129 459
WERAM-Lep-0065 LPERR06G15640.1 Leersia perrieri 69 6e-129 457
WERAM-Php-0113 PP1S53_217V6.1 Physcomitrella patens 64 3e-128 455
WERAM-Tru-0023 TRIUR3_12206-P1 Triticum urartu 71 6e-128 454
WERAM-Sem-0048 EFJ15307 Selaginella moellendorffii 62 1e-124 443
WERAM-Tut-0131 ENSTTRP00000010611.1 Tursiops truncatus 59 1e-114 410
WERAM-Ptv-0049 ENSPVAP00000005253.1 Pteropus vampyrus 60 4e-114 409
WERAM-Mup-0199 ENSMPUP00000017162.1 Mustela putorius furo 60 1e-113 407
WERAM-Eqc-0015 ENSECAP00000002522.1 Equus caballus 60 1e-113 407
WERAM-Mam-0008 ENSMMUP00000001824.2 Macaca mulatta 60 1e-113 407
WERAM-Aim-0104 ENSAMEP00000010054.1 Ailuropoda melanoleuca 60 2e-113 406
WERAM-Poa-0118 ENSPPYP00000014982.2 Pongo abelii 60 2e-113 406
WERAM-Pof-0112 ENSPFOP00000009813.1 Poecilia formosa 59 3e-113 405
WERAM-Paa-0195 ENSPANP00000003035.1 Papio anubis 60 3e-113 405
WERAM-Gog-0090 ENSGGOP00000007570.2 Gorilla gorilla 60 3e-113 405
WERAM-Hos-0174 ENSP00000295757.3 Homo sapiens 60 4e-113 405
WERAM-Ocp-0102 ENSOPRP00000009462.1 Ochotona princeps 60 4e-113 405
WERAM-Orla-0136 ENSORLP00000016174.1 Oryzias latipes 59 5e-113 405
WERAM-Gaa-0111 ENSGACP00000014764.1 Gasterosteus aculeatus 60 6e-113 404
WERAM-Myl-0189 ENSMLUP00000015766.2 Myotis lucifugus 60 8e-113 404
WERAM-Leo-0143 ENSLOCP00000017300.1 Lepisosteus oculatus 59 1e-112 404
WERAM-Cap-0083 ENSCPOP00000005971.2 Cavia porcellus 59 1e-112 403
WERAM-Chs-0115 ENSCSAP00000005710.1 Chlorocebus sabaeus 60 2e-112 403
WERAM-Orc-0095 ENSOCUP00000008476.2 Oryctolagus cuniculus 60 2e-112 402
WERAM-Xim-0081 ENSXMAP00000007517.1 Xiphophorus maculatus 59 3e-112 402
WERAM-Loa-0005 ENSLAFP00000000421.3 Loxodonta africana 59 3e-112 402
WERAM-Meg-0057 ENSMGAP00000005254.2 Meleagris gallopavo 58 1e-111 400
WERAM-Bot-0074 ENSBTAP00000009482.5 Bos taurus 58 2e-111 399
WERAM-Anp-0099 ENSAPLP00000011801.1 Anas platyrhynchos 59 4e-111 398
WERAM-Gaga-0055 ENSGALP00000008151.4 Gallus gallus 58 4e-111 398
WERAM-Pes-0146 ENSPSIP00000017189.1 Pelodiscus sinensis 58 8e-111 397
WERAM-Otg-0083 ENSOGAP00000006490.2 Otolemur garnettii 59 8e-111 397
WERAM-Mum-0132 ENSMUSP00000043828.4 Mus musculus 58 2e-110 396
WERAM-Ran-0042 ENSRNOP00000008962.5 Rattus norvegicus 59 2e-110 396
WERAM-Anc-0120 ENSACAP00000011278.3 Anolis carolinensis 59 3e-110 395
WERAM-Dio-0089 ENSDORP00000009107.1 Dipodomys ordii 59 7e-110 394
WERAM-Hov-0085 MLOC_6441.1 Hordeum vulgare 68 8e-110 394
WERAM-Orn-0036 ENSONIP00000004088.1 Oreochromis niloticus 63 7e-109 391
WERAM-Sah-0048 ENSSHAP00000005466.1 Sarcophilus harrisii 59 7e-108 387
WERAM-Mae-0056 ENSMEUP00000005580.1 Macropus eugenii 57 9e-108 387
WERAM-Tag-0056 ENSTGUP00000003927.1 Taeniopygia guttata 60 2e-107 386
WERAM-Mod-0065 ENSMODP00000010728.2 Monodelphis domestica 58 4e-107 385
WERAM-Pem-0019 ENSPMAP00000002586.1 Petromyzon marinus 56 5e-106 382
WERAM-Fec-0086 ENSFCAP00000006953.3 Felis catus 61 5e-106 381
WERAM-Caf-0054 ENSCAFP00000006551.3 Canis familiaris 61 1e-105 380
WERAM-Sot-0090 PGSC0003DMT400076986 Solanum tuberosum 77 6e-105 378
WERAM-Nol-0049 ENSNLEP00000005908.2 Nomascus leucogenys 61 6e-105 378
WERAM-Dar-0190 ENSDARP00000109681.2 Danio rerio 56 4e-104 375
WERAM-Sus-0082 ENSSSCP00000012372.2 Sus scrofa 56 9e-103 370
WERAM-Cis-0041 ENSCSAVP00000009072.1 Ciona savignyi 55 4e-102 369
WERAM-Orp-0063 OPUNC06G17220.1 Oryza punctata 73 5e-101 365
WERAM-Lac-0082 ENSLACP00000010626.1 Latimeria chalumnae 53 1e-97 353
WERAM-Mim-0127 ENSMICP00000012962.1 Microcebus murinus 53 4e-96 348
WERAM-Fia-0001 ENSFALP00000000041.1 Ficedula albicollis 64 5e-96 348
WERAM-Gam-0017 ENSGMOP00000001513.1 Gadus morhua 51 4e-95 345
WERAM-Ova-0011 ENSOARP00000001712.1 Ovis aries 51 3e-93 339
WERAM-Cii-0063 ENSCINP00000027979.2 Ciona intestinalis 55 2e-89 327
WERAM-Asm-0175 ENSAMXP00000017267.1 Astyanax mexicanus 63 5e-89 325
WERAM-Ict-0088 ENSSTOP00000009419.2 Ictidomys tridecemlineatus 60 2e-88 323
WERAM-Drm-0083 FBpp0084109 Drosophila melanogaster 50 2e-86 317
WERAM-Dan-0117 ENSDNOP00000014714.2 Dasypus novemcinctus 62 3e-84 309
WERAM-Cae-0036 C35A5.9 Caenorhabditis elegans 44 2e-82 303
WERAM-Prc-0001 ENSPCAP00000000121.1 Procavia capensis 47 2e-80 296
WERAM-Chr-0007 EDP00102 Chlamydomonas reinhardtii 49 3e-73 273
WERAM-Pat-0124 ENSPTRP00000025262.3 Pan troglodytes 61 3e-69 259
WERAM-Orl-0079 KN539689.1_FGP004 Oryza longistaminata 55 2e-56 217
WERAM-Tub-0108 ENSTBEP00000012162.1 Tupaia belangeri 57 5e-46 182
WERAM-Ect-0025 ENSETEP00000001831.1 Echinops telfairi 39 1e-45 181
WERAM-Chh-0019 ENSCHOP00000001858.1 Choloepus hoffmanni 43 3e-42 169
WERAM-Amt-0062 ERN16364 Amborella trichopoda 68 3e-40 163
WERAM-Ora-0107 ENSOANP00000020314.1 Ornithorhynchus anatinus 57 4e-40 162
WERAM-Caj-0177 ENSCJAP00000031023.1 Callithrix jacchus 57 2e-36 150
WERAM-Tar-0078 ENSTRUP00000015330.1 Takifugu rubripes 31 5e-29 125
WERAM-Osl-0037 ABP00055 Ostreococcus lucimarinus 29 4e-26 116
WERAM-Cym-0025 CMQ158CT Cyanidioschyzon merolae 31 5e-24 109
WERAM-Xet-0128 ENSXETP00000044353.3 Xenopus tropicalis 26 5e-20 96.3
WERAM-Miv-0013 MVLG_01994T0 Microbotryum violaceum 25 2e-17 87.4
WERAM-Asg-0010 AAS51704 Ashbya gossypii 26 3e-17 86.7
WERAM-Tas-0086 ENSTSYP00000008784.1 Tarsius syrichta 24 1e-16 85.1
WERAM-Vip-0110 ENSVPAP00000010202.1 Vicugna pacos 25 1e-16 84.7
WERAM-Soa-0084 ENSSARP00000008041.1 Sorex araneus 27 8e-16 82.0
WERAM-Caa-0034 KGT64501 Candida albicans 24 2e-15 80.9
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 25 3e-15 80.5
WERAM-Scj-0003 EEB05565 Schizosaccharomyces japonicus 26 5e-15 79.7
WERAM-Cag-0018 CAG60803 Candida glabrata 24 5e-15 79.3
WERAM-Mel-0007 EGF99116 Melampsora laricipopulina 25 6e-15 79.3
WERAM-Pug-0033 EFP89819 Puccinia graminis 29 9e-15 78.6
WERAM-Phn-0005 SNOT_00508 Phaeosphaeria nodorum 31 1e-14 78.6
Created Date 25-Jun-2016