WERAM Information

Tag Content
WERAM ID WERAM-Pot-0080
Ensembl Protein ID POPTR_0006s24640.1
Gene Name POPTR_0006s24640g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0006s24640 POPTR_0006s24640.1 POPTR_0006s24640.1
POPTR_0006s24640 POPTR_0006s24640.2 POPTR_0006s24640.2
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-I 4.50e-26 93.3 85 371
Organism Populus trichocarpa
Domain Profile
  HDAC Class-I
         class-1.txt   5 yaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvf 95 
                         y    d++ + +++ hp   +++  +  +++  g+  k +i++p +as+++ll +h+e y++ lk++ +     ++ e+   ++  +c v 
  POPTR_0006s24640.1  85 YSTAYDISFLGMEKLHPFDSSKWGRICRFLIVDGVLDKNSIIEPLEASKDDLLVVHTESYLSSLKSSAN---VAMIIEVPPVALLPNCLVQ 172
                         6666778888889999*9999*988777777778888889*********************99987654...34555888999*******9 PP
         class-1.txt  96 dg.lfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlailellk..khkrvlyididlhhGDgveeafyttd 183
                         ++ l+ + + + G+++ a +kL  ke+  ain  GG+hh   ++  Gfc   Di l i         ++v+ id+d h G+g e  f++  
  POPTR_0006s24640.1 173 QKvLYPFRKQV-GGTVLA-AKLA-KERGWAINVGGGFHHCCSERGGGFCAYADISLCIHYAFNrlDISKVMIIDLDAHQGNGHERDFSNDR 260
                         87256666655.666644.4565.56789*****************************8765525789*********************** PP
         class-1.txt 184 rvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikgh 274
                         rv  +    y++e +P         +e  +y    v +  g   ++y   + + +    ++f+Pe vv++ G+D l gD+lg  ++s +g+
  POPTR_0006s24640.1 261 RVYIL--DMYNPEIYP-------FDHEARRYIDQKVEVVSGTTTDEYLVKLDEALAVAGKMFDPELVVFNAGTDILDGDPLGRLKISPDGI 342
                         **986..568896666.......566677788888888888877777777788889999*****************************998 PP
         class-1.txt 275 ae....cvkfvksfnlpllvlGGGGYtlr 299
                         ++    + +f ++ n+ l++l  GGY + 
  POPTR_0006s24640.1 343 TSrdekVFRFAREKNASLVMLTSGGYMKS 371
                         64334499999***************764 PP
Protein Sequence
(Fasta)		MTFRVTPVIT ESTRNLGKST LYFFLTIAAI KASHSLYRCI RSLTMSSSSS STSNSTADAS 60
TLRRNRILSS KVYFDVPLSK VPLIYSTAYD ISFLGMEKLH PFDSSKWGRI CRFLIVDGVL 120
DKNSIIEPLE ASKDDLLVVH TESYLSSLKS SANVAMIIEV PPVALLPNCL VQQKVLYPFR 180
KQVGGTVLAA KLAKERGWAI NVGGGFHHCC SERGGGFCAY ADISLCIHYA FNRLDISKVM 240
IIDLDAHQGN GHERDFSNDR RVYILDMYNP EIYPFDHEAR RYIDQKVEVV SGTTTDEYLV 300
KLDEALAVAG KMFDPELVVF NAGTDILDGD PLGRLKISPD GITSRDEKVF RFAREKNASL 360
VMLTSGGYMK SSARVIADSI ANLSKQTLIN F 391
Nucleotide Sequence
(Fasta)		ATGACGTTCC GAGTCACACC AGTAATCACT GAGTCAACTC GGAATCTCGG CAAATCAACG 60
CTATATTTCT TCCTCACAAT CGCCGCTATC AAAGCATCAC ATTCTCTCTA CCGCTGCATT 120
CGCTCTCTAA CAATGTCATC TTCTTCATCT TCAACGAGTA ACAGTACTGC TGATGCCTCT 180
ACTCTCCGCC GAAATCGTAT TCTCTCTAGC AAGGTCTATT TTGACGTGCC TCTCTCTAAG 240
GTACCGCTAA TTTACTCGAC GGCTTATGAT ATTTCGTTTC TTGGCATGGA AAAGCTGCAC 300
CCCTTTGATT CTTCTAAATG GGGTCGCATA TGTCGATTCC TCATCGTGGA TGGTGTTCTA 360
GACAAAAATA GTATCATTGA ACCTCTAGAA GCGTCAAAAG ATGATCTCCT TGTGGTTCAC 420
ACGGAGTCAT ATTTGAGCAG TCTAAAGAGC AGTGCAAATG TTGCCATGAT AATCGAGGTT 480
CCCCCAGTCG CACTACTTCC CAATTGTCTT GTGCAGCAAA AAGTTCTTTA CCCATTTCGC 540
AAGCAGGTAG GGGGAACTGT TCTGGCAGCA AAACTTGCAA AAGAGCGAGG GTGGGCCATC 600
AATGTTGGAG GAGGTTTCCA TCACTGCTGT AGTGAAAGAG GAGGTGGATT TTGTGCTTAT 660
GCAGACATTT CTCTTTGCAT TCATTATGCC TTCAACCGGC TTGATATATC AAAGGTGATG 720
ATAATTGACC TCGATGCACA CCAAGGAAAT GGCCATGAAA GGGATTTTTC CAATGACAGA 780
CGAGTTTATA TTCTGGATAT GTACAACCCT GAAATATATC CTTTTGATCA TGAAGCTAGG 840
AGGTACATTG ATCAGAAGGT TGAAGTAGTG AGTGGTACCA CAACAGATGA GTACTTGGTG 900
AAACTTGATG AAGCACTCGC GGTTGCTGGT AAAATGTTTG ATCCTGAGTT GGTGGTCTTC 960
AATGCCGGCA CTGATATCCT GGATGGAGAC CCATTAGGGA GGTTAAAGAT TAGCCCTGAT 1020
GGAATAACTA GCAGAGATGA GAAAGTTTTC AGGTTTGCTC GTGAAAAGAA TGCCTCTCTT 1080
GTCATGTTGA CATCAGGTGG TTACATGAAG TCCAGTGCCA GAGTTATAGC AGATTCGATA 1140
GCGAACCTCT CAAAACAGAC CTTAATAAAT TTCTAGACTA GTAGACCGGT CCTCAGTGAG 1200
GGTAATTAAT ACCAGTCTGT GGCATGCCCT TCAGGATTTT GGTCCGTGTT TGAGATGAAA 1260
CCGTGACAGC TTACCTCTTT ATGCAGAAGG TTGTAAATAT ATGAAATGAA GAAAAAGAAA 1320
ATATGTAGGA CACTCACAGG GAGCAATTTA GTGCTTATAT ACGGGCTGTA AAGCTAAAAA 1380
TGCTGTCCAT GCCATTTAAT GTGTACGTAG TAAATTTTCA GCTACCGTAT TAAATTTTAA 1440
CAGCCTTTAT CAAAGCTCTC TGTGCAGAGA AACCTGAACT GATCTGCCAG AATCCTACCG 1500
CGGGCCTGGA AGCTCTCTTG ATTGTGGCTG TTTTGTTTTT GACGTCGTAA AGTGTTTTTG 1560
CAGAAACTTA GATTTGTTTT TTTTGCTGAA AATGATGGAG ATCAAAGGGT AACTTCT 1618
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Viv-0015 VIT_04s0008g00910.t01 Vitis vinifera 86 1e-171 600
WERAM-Art-0129 AT5G26040.2 Arabidopsis thaliana 73 2e-163 572
WERAM-Arl-0095 fgenesh2_kg.6__ 2585__ AT5G26040.2 Arabidopsis lyrata 73 1e-162 569
WERAM-Met-0014 AES59273 Medicago truncatula 82 1e-161 566
WERAM-Sol-0102 Solyc08g065350.2.1 Solanum lycopersicum 79 9e-161 563
WERAM-Glm-0229 GLYMA17G34770.1 Glycine max 80 1e-159 560
WERAM-Bro-0132 Bo7g095520.1 Brassica oleracea 71 4e-157 551
WERAM-Thc-0103 EOY29884 Theobroma cacao 75 1e-154 543
WERAM-Brr-0052 Bra009877.1-P Brassica rapa 78 1e-153 540
WERAM-Brd-0021 BRADI1G37510.1 Brachypodium distachyon 75 2e-152 536
WERAM-Tra-0321 Traes_7DL_86EEFA04E.2 Triticum aestivum 75 2e-151 532
WERAM-Mua-0015 GSMUA_Achr10P28050_001 Musa acuminata 78 3e-151 531
WERAM-Orgl-0063 OGLUM06G20210.1 Oryza glumaepatula 75 3e-151 531
WERAM-Ors-0058 OS06T0571100-01 Oryza sativa 75 1e-150 530
WERAM-Orni-0064 ONIVA06G22840.1 Oryza nivara 75 1e-150 530
WERAM-Ori-0066 BGIOSGA021002-PA Oryza indica 75 1e-150 530
WERAM-Org-0062 ORGLA06G0157900.1 Oryza glaberrima 75 1e-150 530
WERAM-Orb-0065 OBART06G18360.1 Oryza barthii 75 1e-150 530
WERAM-Orr-0066 ORUFI06G20130.1 Oryza rufipogon 74 2e-150 528
WERAM-Sei-0028 Si006784m Setaria italica 72 2e-146 515
WERAM-Sob-0134 Sb10g022550.1 Sorghum bicolor 71 2e-145 512
WERAM-Zem-0011 GRMZM2G008425_P01 Zea mays 71 5e-145 511
WERAM-Prp-0064 EMJ26901 Prunus persica 74 3e-142 502
WERAM-Orbr-0073 OB06G26590.1 Oryza brachyantha 72 2e-139 492
WERAM-Aet-0055 EMT26973 Aegilops tauschii 65 2e-135 479
WERAM-Orm-0062 OMERI06G19350.1 Oryza meridionalis 69 3e-134 475
WERAM-Tru-0023 TRIUR3_12206-P1 Triticum urartu 75 6e-134 474
WERAM-Lep-0065 LPERR06G15640.1 Leersia perrieri 73 2e-133 472
WERAM-Php-0013 PP1S127_95V6.1 Physcomitrella patens 66 3e-133 472
WERAM-Sem-0048 EFJ15307 Selaginella moellendorffii 65 2e-129 459
WERAM-Hov-0085 MLOC_6441.1 Hordeum vulgare 75 2e-114 409
WERAM-Sot-0090 PGSC0003DMT400076986 Solanum tuberosum 82 2e-110 396
WERAM-Pof-0112 ENSPFOP00000009813.1 Poecilia formosa 57 2e-109 393
WERAM-Xim-0081 ENSXMAP00000007517.1 Xiphophorus maculatus 57 2e-108 390
WERAM-Tut-0131 ENSTTRP00000010611.1 Tursiops truncatus 57 3e-107 386
WERAM-Eqc-0015 ENSECAP00000002522.1 Equus caballus 57 4e-107 385
WERAM-Mup-0199 ENSMPUP00000017162.1 Mustela putorius furo 57 5e-107 385
WERAM-Orc-0095 ENSOCUP00000008476.2 Oryctolagus cuniculus 56 1e-106 384
WERAM-Orla-0136 ENSORLP00000016174.1 Oryzias latipes 57 1e-106 383
WERAM-Ocp-0102 ENSOPRP00000009462.1 Ochotona princeps 57 2e-106 383
WERAM-Poa-0118 ENSPPYP00000014982.2 Pongo abelii 57 2e-106 382
WERAM-Leo-0143 ENSLOCP00000017300.1 Lepisosteus oculatus 56 3e-106 382
WERAM-Aim-0104 ENSAMEP00000010054.1 Ailuropoda melanoleuca 56 3e-106 382
WERAM-Ptv-0049 ENSPVAP00000005253.1 Pteropus vampyrus 57 3e-106 382
WERAM-Cap-0083 ENSCPOP00000005971.2 Cavia porcellus 57 4e-106 382
WERAM-Myl-0189 ENSMLUP00000015766.2 Myotis lucifugus 57 4e-106 382
WERAM-Gog-0090 ENSGGOP00000007570.2 Gorilla gorilla 57 4e-106 382
WERAM-Loa-0005 ENSLAFP00000000421.3 Loxodonta africana 56 5e-106 381
WERAM-Bot-0074 ENSBTAP00000009482.5 Bos taurus 57 5e-106 381
WERAM-Hos-0174 ENSP00000295757.3 Homo sapiens 57 6e-106 381
WERAM-Mam-0008 ENSMMUP00000001824.2 Macaca mulatta 57 6e-106 381
WERAM-Paa-0195 ENSPANP00000003035.1 Papio anubis 57 1e-105 380
WERAM-Pes-0146 ENSPSIP00000017189.1 Pelodiscus sinensis 57 2e-105 379
WERAM-Chs-0115 ENSCSAP00000005710.1 Chlorocebus sabaeus 57 3e-105 379
WERAM-Gaa-0111 ENSGACP00000014764.1 Gasterosteus aculeatus 57 4e-105 378
WERAM-Meg-0057 ENSMGAP00000005254.2 Meleagris gallopavo 57 6e-105 378
WERAM-Anp-0099 ENSAPLP00000011801.1 Anas platyrhynchos 57 1e-104 377
WERAM-Ran-0042 ENSRNOP00000008962.5 Rattus norvegicus 56 2e-104 376
WERAM-Gaga-0055 ENSGALP00000008151.4 Gallus gallus 57 2e-104 376
WERAM-Mum-0132 ENSMUSP00000043828.4 Mus musculus 56 3e-104 375
WERAM-Dio-0089 ENSDORP00000009107.1 Dipodomys ordii 57 3e-104 375
WERAM-Orp-0063 OPUNC06G17220.1 Oryza punctata 75 2e-103 373
WERAM-Anc-0120 ENSACAP00000011278.3 Anolis carolinensis 56 7e-103 371
WERAM-Sah-0048 ENSSHAP00000005466.1 Sarcophilus harrisii 57 1e-102 370
WERAM-Tag-0056 ENSTGUP00000003927.1 Taeniopygia guttata 57 1e-102 370
WERAM-Otg-0083 ENSOGAP00000006490.2 Otolemur garnettii 57 1e-102 370
WERAM-Orn-0036 ENSONIP00000004088.1 Oreochromis niloticus 59 3e-102 369
WERAM-Pem-0019 ENSPMAP00000002586.1 Petromyzon marinus 53 1e-101 367
WERAM-Mae-0056 ENSMEUP00000005580.1 Macropus eugenii 56 5e-101 365
WERAM-Fec-0086 ENSFCAP00000006953.3 Felis catus 59 1e-99 360
WERAM-Nol-0049 ENSNLEP00000005908.2 Nomascus leucogenys 59 1e-99 360
WERAM-Caf-0054 ENSCAFP00000006551.3 Canis familiaris 59 2e-99 360
WERAM-Mod-0065 ENSMODP00000010728.2 Monodelphis domestica 55 8e-99 357
WERAM-Cis-0041 ENSCSAVP00000009072.1 Ciona savignyi 55 3e-98 355
WERAM-Sus-0082 ENSSSCP00000012372.2 Sus scrofa 54 3e-97 352
WERAM-Dar-0190 ENSDARP00000109681.2 Danio rerio 53 5e-96 348
WERAM-Gam-0017 ENSGMOP00000001513.1 Gadus morhua 51 2e-92 337
WERAM-Lac-0082 ENSLACP00000010626.1 Latimeria chalumnae 52 2e-92 337
WERAM-Cii-0063 ENSCINP00000027979.2 Ciona intestinalis 56 2e-88 323
WERAM-Fia-0001 ENSFALP00000000041.1 Ficedula albicollis 60 3e-88 322
WERAM-Drm-0083 FBpp0084109 Drosophila melanogaster 51 3e-87 319
WERAM-Mim-0127 ENSMICP00000012962.1 Microcebus murinus 50 5e-87 318
WERAM-Ova-0011 ENSOARP00000001712.1 Ovis aries 50 3e-85 312
WERAM-Ict-0088 ENSSTOP00000009419.2 Ictidomys tridecemlineatus 57 7e-85 311
WERAM-Asm-0175 ENSAMXP00000017267.1 Astyanax mexicanus 61 3e-84 309
WERAM-Cae-0036 C35A5.9 Caenorhabditis elegans 44 7e-82 301
WERAM-Dan-0117 ENSDNOP00000014714.2 Dasypus novemcinctus 59 2e-79 293
WERAM-Prc-0001 ENSPCAP00000000121.1 Procavia capensis 46 3e-77 286
WERAM-Chr-0007 EDP00102 Chlamydomonas reinhardtii 48 8e-71 265
WERAM-Pat-0124 ENSPTRP00000025262.3 Pan troglodytes 60 2e-65 246
WERAM-Orl-0079 KN539689.1_FGP004 Oryza longistaminata 57 2e-59 226
WERAM-Tub-0108 ENSTBEP00000012162.1 Tupaia belangeri 55 5e-46 182
WERAM-Chh-0019 ENSCHOP00000001858.1 Choloepus hoffmanni 43 2e-42 170
WERAM-Amt-0062 ERN16364 Amborella trichopoda 67 7e-42 168
WERAM-Ect-0025 ENSETEP00000001831.1 Echinops telfairi 37 2e-40 164
WERAM-Ora-0107 ENSOANP00000020314.1 Ornithorhynchus anatinus 56 4e-38 156
WERAM-Caj-0177 ENSCJAP00000031023.1 Callithrix jacchus 53 3e-32 136
WERAM-Tar-0078 ENSTRUP00000015330.1 Takifugu rubripes 31 1e-30 131
WERAM-Osl-0037 ABP00055 Ostreococcus lucimarinus 30 3e-25 113
WERAM-Cym-0025 CMQ158CT Cyanidioschyzon merolae 29 2e-23 107
WERAM-Xet-0128 ENSXETP00000044353.3 Xenopus tropicalis 27 9e-20 95.1
WERAM-Tas-0086 ENSTSYP00000008784.1 Tarsius syrichta 25 5e-17 86.3
WERAM-Asg-0010 AAS51704 Ashbya gossypii 23 4e-16 83.2
WERAM-Vip-0110 ENSVPAP00000010202.1 Vicugna pacos 25 5e-16 82.8
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 26 5e-15 79.7
Created Date 25-Jun-2016