Tag |
Content |
WERAM ID |
WERAM-Brr-0052 |
Ensembl Protein ID |
Bra009877.1-P |
Gene Name |
HDA2 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-IV |
3.40e-151 |
503.6 |
47 |
332 |
HDAC |
Class-I |
2.50e-25 |
90.7 |
35 |
323 |
|
Organism |
Brassica rapa |
Domain Profile |
HDAC Class-IV
class-4.txt 1 leklhpfdaskwkkvikflkeeklledealveareaskedllvvhtrkylkslksslkvatiteiplvaflpnflvqrkvlrplrlqagGtilaak 96 +eklhpfd++kw++v+kfl+++ +le++++ve+ eas++dllvvh+ +yl+slkss++va+ite+p+vaf+pnflvq+kvl p+r+q+gGtilaak Bra009877.1-P 47 IEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITEVPPVAFFPNFLVQQKVLSPFRKQVGGTILAAK 142 79********************************************************************************************** PP class-4.txt 97 laverGwainvGGGfhhcsserGGGfcayaditlaikflferlkaisrviiidldahqGnGherdfaddkrvyildvynreiypkdrvakeairrk 192 laverGwainvGGGfhhc++erGGGfca+adi+l+i+f+f rl isrv+iidldahqGnGhe+d+ dd+rvyild+yn+eiyp d+ a+++i++k Bra009877.1-P 143 LAVERGWAINVGGGFHHCTAERGGGFCAFADISLCIHFAFLRLS-ISRVMIIDLDAHQGNGHETDLGDDSRVYILDMYNPEIYPYDYSARRFIDQK 237 ******************************************98.*************************************************** PP class-4.txt 193 velesgtedeeylekleralkkslqefepdlvvynaGtdvleGdrlGalkispegivkrdevvfrlvrakdipivmvtsGGyqkrsarviadsil 287 ve++sgt ++eyl+kl++al+ + ++f+p++vvynaGtd+l+Gd+lG lkisp+gi++rde+vfr++r++++p+vm+tsGGy+k++arviadsi+ Bra009877.1-P 238 VEVMSGTSTDEYLRKLDKALEVAFRNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSRDEKVFRVAREREVPVVMLTSGGYMKSNARVIADSIE 332 *********************************************************************************************95 PP
HDAC Class-I
class-1.txt 4 ayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglf 99 y d++ + +++ hp ++++ + +++++ g ++ +iv+p +as ++ll +hs +y++ lk++ + + + + + v +++ Bra009877.1-P 35 IYSSAYDISFMGIEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITE---VPPVAFFPNFLVQQKVL 127 5667778888889999*************************************************98765444333...33333344556666666 PP class-1.txt 100 eycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlail.ellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhky 193 + + G+++ aak L e+ ain GG+hh ++ Gfc Di l i +l+ + +rv+ id+d h G+g e + +rv + y Bra009877.1-P 128 SPFRKQVGGTILAAK-LA-VERGWAINVGGGFHHCTAERGGGFCAFADISLCIHfAFLRlSISRVMIIDLDAHQGNGHETDLGDDSRVYIL--DMY 219 666677788886664.44.45678***************************9963455559***************************986..568 PP class-1.txt 194 geeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghae....cvkfvksfn 285 ++e +P ++ v + g ++y + + + ++ ++ f+Pe+vv + G+D l gD+lg ++s +g+++ + ++ ++ + Bra009877.1-P 220 NPEIYPY-------DYSARRFIDQKVEVMSGTSTDEYLRKLDKALEVAFRNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSrdekVFRVARERE 308 9977774.......4445566667788889988888888889999*********************************998643344899999*** PP class-1.txt 286 lpllvlGGGGYtlrn 300 +p+++l GGY + n Bra009877.1-P 309 VPVVMLTSGGYMKSN 323 ***********9887 PP
|
Protein Sequence (Fasta) | MSSFSMETHP EALRRERILS SKLYFNVPES KVSIIYSSAY DISFMGIEKL HPFDSTKWRR 60 VCKFLVSDGF LEEKSIVEPL EASNSDLLVV HSLNYLNSLK SSATVARITE VPPVAFFPNF 120 LVQQKVLSPF RKQVGGTILA AKLAVERGWA INVGGGFHHC TAERGGGFCA FADISLCIHF 180 AFLRLSISRV MIIDLDAHQG NGHETDLGDD SRVYILDMYN PEIYPYDYSA RRFIDQKVEV 240 MSGTSTDEYL RKLDKALEVA FRNFQPEMVV YNAGTDILDG DPLGLLKISP DGITSRDEKV 300 FRVAREREVP VVMLTSGGYM KSNARVIADS IENLSRQGLI KTQLDSAST 349Protein Fasta Sequence
>Bra009877.1-P|Class-I|Brassica rapa MSSFSMETHPEALRRERILSSKLYFNVPESKVSIIYSSAYDISFMGIEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITEVPPVAFFPNFLVQQKVLSPFRKQVGGTILAAKLAVERGWAINVGGGFHHCTAERGGGFCAFADISLCIHFAFLRLSISRVMIIDLDAHQGNGHETDLGDDSRVYILDMYNPEIYPYDYSARRFIDQKVEVMSGTSTDEYLRKLDKALEVAFRNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSRDEKVFRVAREREVPVVMLTSGGYMKSNARVIADSIENLSRQGLIKTQLDSAST
|
Nucleotide Sequence (Fasta) | ATGTCATCGT TCTCGATGGA GACTCACCCG GAAGCTCTCA GGCGAGAACG AATCCTTTCC 60 AGCAAACTCT ACTTCAACGT CCCCGAATCA AAGGTTTCGA TCATCTATTC ATCAGCATAC 120 GACATCTCCT TCATGGGGAT TGAGAAGTTG CATCCGTTTG ATTCAACCAA GTGGCGTCGA 180 GTTTGTAAGT TCCTTGTTTC TGATGGGTTC TTGGAGGAGA AATCAATCGT TGAGCCTCTA 240 GAAGCTTCCA ACAGTGATCT TCTAGTGGTA CATTCGTTGA ACTACTTAAA CAGTTTGAAA 300 AGCAGTGCAA CTGTCGCTAG GATAACCGAG GTTCCACCAG TTGCTTTCTT CCCAAACTTT 360 CTTGTGCAGC AGAAGGTTCT AAGCCCATTC CGAAAGCAGG TTGGTGGGAC GATTCTAGCA 420 GCTAAACTTG CAGTGGAACG TGGATGGGCA ATAAACGTAG GAGGAGGTTT TCATCATTGT 480 ACTGCTGAAA GAGGAGGCGG GTTTTGTGCT TTTGCTGATA TCTCTCTTTG TATTCACTTT 540 GCTTTTCTTC GTCTAAGCAT CTCCCGGGTT ATGATAATAG ATCTTGATGC TCATCAAGGG 600 AATGGCCATG AAACAGATCT TGGCGATGAT AGTCGTGTTT ACATTCTGGA TATGTATAAT 660 CCTGAGATAT ACCCTTACGA TTATAGTGCT AGAAGATTTA TCGATCAGAA GGTTGAAGTG 720 ATGAGCGGGA CCAGCACTGA TGAGTATTTG AGGAAACTAG ATAAAGCGCT TGAGGTTGCT 780 TTCCGAAACT TCCAACCAGA GATGGTAGTT TACAATGCTG GAACCGATAT CTTAGACGGA 840 GACCCTCTGG GGCTTCTAAA GATAAGCCCT GATGGTATAA CAAGCAGAGA CGAGAAAGTC 900 TTCAGAGTTG CAAGGGAGAG AGAGGTTCCT GTTGTGATGC TGACTTCAGG CGGGTACATG 960 AAGTCCAACG CCAGAGTTAT TGCGGATTCC ATAGAGAATC TCTCACGTCA AGGGTTAATC 1020 AAGACACAAC TGGACTCAGC TTCCACGTGA
1051Nucleotide Fasta Sequence
>Bra009877.1-P|Class-I|Brassica rapa ATGTCATCGTTCTCGATGGAGACTCACCCGGAAGCTCTCAGGCGAGAACGAATCCTTTCCAGCAAACTCTACTTCAACGTCCCCGAATCAAAGGTTTCGATCATCTATTCATCAGCATACGACATCTCCTTCATGGGGATTGAGAAGTTGCATCCGTTTGATTCAACCAAGTGGCGTCGAGTTTGTAAGTTCCTTGTTTCTGATGGGTTCTTGGAGGAGAAATCAATCGTTGAGCCTCTAGAAGCTTCCAACAGTGATCTTCTAGTGGTACATTCGTTGAACTACTTAAACAGTTTGAAAAGCAGTGCAACTGTCGCTAGGATAACCGAGGTTCCACCAGTTGCTTTCTTCCCAAACTTTCTTGTGCAGCAGAAGGTTCTAAGCCCATTCCGAAAGCAGGTTGGTGGGACGATTCTAGCAGCTAAACTTGCAGTGGAACGTGGATGGGCAATAAACGTAGGAGGAGGTTTTCATCATTGTACTGCTGAAAGAGGAGGCGGGTTTTGTGCTTTTGCTGATATCTCTCTTTGTATTCACTTTGCTTTTCTTCGTCTAAGCATCTCCCGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGATCTTGGCGATGATAGTCGTGTTTACATTCTGGATATGTATAATCCTGAGATATACCCTTACGATTATAGTGCTAGAAGATTTATCGATCAGAAGGTTGAAGTGATGAGCGGGACCAGCACTGATGAGTATTTGAGGAAACTAGATAAAGCGCTTGAGGTTGCTTTCCGAAACTTCCAACCAGAGATGGTAGTTTACAATGCTGGAACCGATATCTTAGACGGAGACCCTCTGGGGCTTCTAAAGATAAGCCCTGATGGTATAACAAGCAGAGACGAGAAAGTCTTCAGAGTTGCAAGGGAGAGAGAGGTTCCTGTTGTGATGCTGACTTCAGGCGGGTACATGAAGTCCAACGCCAGAGTTATTGCGGATTCCATAGAGAATCTCTCACGTCAAGGGTTAATCAAGACACAACTGGACTCAGCTTCCACGTGA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |