WERAM Information


Tag Content
WERAM ID WERAM-Brr-0052
Ensembl Protein ID Bra009877.1-P
Gene Name HDA2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra009877 Bra009877.1 Bra009877.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC Class-IV 3.40e-151 503.6 47 332
HDAC Class-I 2.50e-25 90.7 35 323
Organism Brassica rapa
Domain Profile
  HDAC Class-IV

    class-4.txt   1 leklhpfdaskwkkvikflkeeklledealveareaskedllvvhtrkylkslksslkvatiteiplvaflpnflvqrkvlrplrlqagGtilaak 96 
+eklhpfd++kw++v+kfl+++ +le++++ve+ eas++dllvvh+ +yl+slkss++va+ite+p+vaf+pnflvq+kvl p+r+q+gGtilaak
Bra009877.1-P 47 IEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITEVPPVAFFPNFLVQQKVLSPFRKQVGGTILAAK 142
79********************************************************************************************** PP
class-4.txt 97 laverGwainvGGGfhhcsserGGGfcayaditlaikflferlkaisrviiidldahqGnGherdfaddkrvyildvynreiypkdrvakeairrk 192
laverGwainvGGGfhhc++erGGGfca+adi+l+i+f+f rl isrv+iidldahqGnGhe+d+ dd+rvyild+yn+eiyp d+ a+++i++k
Bra009877.1-P 143 LAVERGWAINVGGGFHHCTAERGGGFCAFADISLCIHFAFLRLS-ISRVMIIDLDAHQGNGHETDLGDDSRVYILDMYNPEIYPYDYSARRFIDQK 237
******************************************98.*************************************************** PP
class-4.txt 193 velesgtedeeylekleralkkslqefepdlvvynaGtdvleGdrlGalkispegivkrdevvfrlvrakdipivmvtsGGyqkrsarviadsil 287
ve++sgt ++eyl+kl++al+ + ++f+p++vvynaGtd+l+Gd+lG lkisp+gi++rde+vfr++r++++p+vm+tsGGy+k++arviadsi+
Bra009877.1-P 238 VEVMSGTSTDEYLRKLDKALEVAFRNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSRDEKVFRVAREREVPVVMLTSGGYMKSNARVIADSIE 332
*********************************************************************************************95 PP

  HDAC Class-I

    class-1.txt   4 ayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglf 99 
y d++ + +++ hp ++++ + +++++ g ++ +iv+p +as ++ll +hs +y++ lk++ + + + + + v +++
Bra009877.1-P 35 IYSSAYDISFMGIEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITE---VPPVAFFPNFLVQQKVL 127
5667778888889999*************************************************98765444333...33333344556666666 PP
class-1.txt 100 eycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlail.ellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhky 193
+ + G+++ aak L e+ ain GG+hh ++ Gfc Di l i +l+ + +rv+ id+d h G+g e + +rv + y
Bra009877.1-P 128 SPFRKQVGGTILAAK-LA-VERGWAINVGGGFHHCTAERGGGFCAFADISLCIHfAFLRlSISRVMIIDLDAHQGNGHETDLGDDSRVYIL--DMY 219
666677788886664.44.45678***************************9963455559***************************986..568 PP
class-1.txt 194 geeffPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghae....cvkfvksfn 285
++e +P ++ v + g ++y + + + ++ ++ f+Pe+vv + G+D l gD+lg ++s +g+++ + ++ ++ +
Bra009877.1-P 220 NPEIYPY-------DYSARRFIDQKVEVMSGTSTDEYLRKLDKALEVAFRNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSrdekVFRVARERE 308
9977774.......4445566667788889988888888889999*********************************998643344899999*** PP
class-1.txt 286 lpllvlGGGGYtlrn 300
+p+++l GGY + n
Bra009877.1-P 309 VPVVMLTSGGYMKSN 323
***********9887 PP

Protein Sequence
(Fasta)
MSSFSMETHP EALRRERILS SKLYFNVPES KVSIIYSSAY DISFMGIEKL HPFDSTKWRR 60
VCKFLVSDGF LEEKSIVEPL EASNSDLLVV HSLNYLNSLK SSATVARITE VPPVAFFPNF 120
LVQQKVLSPF RKQVGGTILA AKLAVERGWA INVGGGFHHC TAERGGGFCA FADISLCIHF 180
AFLRLSISRV MIIDLDAHQG NGHETDLGDD SRVYILDMYN PEIYPYDYSA RRFIDQKVEV 240
MSGTSTDEYL RKLDKALEVA FRNFQPEMVV YNAGTDILDG DPLGLLKISP DGITSRDEKV 300
FRVAREREVP VVMLTSGGYM KSNARVIADS IENLSRQGLI KTQLDSAST 349
Nucleotide Sequence
(Fasta)
ATGTCATCGT TCTCGATGGA GACTCACCCG GAAGCTCTCA GGCGAGAACG AATCCTTTCC 60
AGCAAACTCT ACTTCAACGT CCCCGAATCA AAGGTTTCGA TCATCTATTC ATCAGCATAC 120
GACATCTCCT TCATGGGGAT TGAGAAGTTG CATCCGTTTG ATTCAACCAA GTGGCGTCGA 180
GTTTGTAAGT TCCTTGTTTC TGATGGGTTC TTGGAGGAGA AATCAATCGT TGAGCCTCTA 240
GAAGCTTCCA ACAGTGATCT TCTAGTGGTA CATTCGTTGA ACTACTTAAA CAGTTTGAAA 300
AGCAGTGCAA CTGTCGCTAG GATAACCGAG GTTCCACCAG TTGCTTTCTT CCCAAACTTT 360
CTTGTGCAGC AGAAGGTTCT AAGCCCATTC CGAAAGCAGG TTGGTGGGAC GATTCTAGCA 420
GCTAAACTTG CAGTGGAACG TGGATGGGCA ATAAACGTAG GAGGAGGTTT TCATCATTGT 480
ACTGCTGAAA GAGGAGGCGG GTTTTGTGCT TTTGCTGATA TCTCTCTTTG TATTCACTTT 540
GCTTTTCTTC GTCTAAGCAT CTCCCGGGTT ATGATAATAG ATCTTGATGC TCATCAAGGG 600
AATGGCCATG AAACAGATCT TGGCGATGAT AGTCGTGTTT ACATTCTGGA TATGTATAAT 660
CCTGAGATAT ACCCTTACGA TTATAGTGCT AGAAGATTTA TCGATCAGAA GGTTGAAGTG 720
ATGAGCGGGA CCAGCACTGA TGAGTATTTG AGGAAACTAG ATAAAGCGCT TGAGGTTGCT 780
TTCCGAAACT TCCAACCAGA GATGGTAGTT TACAATGCTG GAACCGATAT CTTAGACGGA 840
GACCCTCTGG GGCTTCTAAA GATAAGCCCT GATGGTATAA CAAGCAGAGA CGAGAAAGTC 900
TTCAGAGTTG CAAGGGAGAG AGAGGTTCCT GTTGTGATGC TGACTTCAGG CGGGTACATG 960
AAGTCCAACG CCAGAGTTAT TGCGGATTCC ATAGAGAATC TCTCACGTCA AGGGTTAATC 1020
AAGACACAAC TGGACTCAGC TTCCACGTGA 1051
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0132 Bo7g095520.1 Brassica oleracea 99 0.0 713
WERAM-Art-0129 AT5G26040.2 Arabidopsis thaliana 90 0.0 650
WERAM-Arl-0095 fgenesh2_kg.6__ 2585__ AT5G26040.2 Arabidopsis lyrata 90 0.0 649
WERAM-Pot-0080 POPTR_0006s24640.1 Populus trichocarpa 78 4e-154 541
WERAM-Viv-0015 VIT_04s0008g00910.t01 Vitis vinifera 77 6e-154 540
WERAM-Thc-0103 EOY29884 Theobroma cacao 77 1e-152 536
WERAM-Glm-0229 GLYMA17G34770.1 Glycine max 74 3e-151 531
WERAM-Met-0014 AES59273 Medicago truncatula 74 1e-150 530
WERAM-Sol-0102 Solyc08g065350.2.1 Solanum lycopersicum 73 7e-150 527
WERAM-Orgl-0063 OGLUM06G20210.1 Oryza glumaepatula 72 1e-147 520
WERAM-Ors-0058 OS06T0571100-01 Oryza sativa 72 3e-147 518
WERAM-Orni-0064 ONIVA06G22840.1 Oryza nivara 72 3e-147 518
WERAM-Ori-0066 BGIOSGA021002-PA Oryza indica 72 3e-147 518
WERAM-Org-0062 ORGLA06G0157900.1 Oryza glaberrima 72 3e-147 518
WERAM-Orb-0065 OBART06G18360.1 Oryza barthii 72 3e-147 518
WERAM-Orr-0066 ORUFI06G20130.1 Oryza rufipogon 72 7e-147 517
WERAM-Brd-0021 BRADI1G37510.1 Brachypodium distachyon 72 1e-146 516
WERAM-Tra-0321 Traes_7DL_86EEFA04E.2 Triticum aestivum 70 2e-144 509
WERAM-Sei-0028 Si006784m Setaria italica 70 6e-144 507
WERAM-Zem-0011 GRMZM2G008425_P01 Zea mays 68 1e-141 499
WERAM-Sob-0134 Sb10g022550.1 Sorghum bicolor 68 1e-141 499
WERAM-Mua-0015 GSMUA_Achr10P28050_001 Musa acuminata 71 6e-141 497
WERAM-Orbr-0073 OB06G26590.1 Oryza brachyantha 68 2e-134 476
WERAM-Orm-0062 OMERI06G19350.1 Oryza meridionalis 67 2e-132 469
WERAM-Aet-0055 EMT26973 Aegilops tauschii 62 4e-130 461
WERAM-Lep-0065 LPERR06G15640.1 Leersia perrieri 69 2e-129 459
WERAM-Prp-0064 EMJ26901 Prunus persica 76 1e-128 456
WERAM-Php-0113 PP1S53_217V6.1 Physcomitrella patens 62 3e-128 455
WERAM-Tru-0023 TRIUR3_12206-P1 Triticum urartu 71 3e-128 455
WERAM-Sem-0048 EFJ15307 Selaginella moellendorffii 62 1e-124 443
WERAM-Tut-0131 ENSTTRP00000010611.1 Tursiops truncatus 59 6e-115 411
WERAM-Mup-0199 ENSMPUP00000017162.1 Mustela putorius furo 60 7e-114 407
WERAM-Ptv-0049 ENSPVAP00000005253.1 Pteropus vampyrus 60 9e-114 407
WERAM-Eqc-0015 ENSECAP00000002522.1 Equus caballus 59 2e-113 405
WERAM-Orc-0095 ENSOCUP00000008476.2 Oryctolagus cuniculus 61 3e-113 405
WERAM-Mam-0008 ENSMMUP00000001824.2 Macaca mulatta 60 3e-113 405
WERAM-Aim-0104 ENSAMEP00000010054.1 Ailuropoda melanoleuca 59 4e-113 405
WERAM-Poa-0118 ENSPPYP00000014982.2 Pongo abelii 60 4e-113 405
WERAM-Ocp-0102 ENSOPRP00000009462.1 Ochotona princeps 60 5e-113 404
WERAM-Pof-0112 ENSPFOP00000009813.1 Poecilia formosa 59 7e-113 404
WERAM-Paa-0195 ENSPANP00000003035.1 Papio anubis 60 7e-113 404
WERAM-Orla-0136 ENSORLP00000016174.1 Oryzias latipes 59 8e-113 404
WERAM-Gog-0090 ENSGGOP00000007570.2 Gorilla gorilla 60 8e-113 404
WERAM-Hos-0174 ENSP00000295757.3 Homo sapiens 60 9e-113 404
WERAM-Gaa-0111 ENSGACP00000014764.1 Gasterosteus aculeatus 59 1e-112 403
WERAM-Myl-0189 ENSMLUP00000015766.2 Myotis lucifugus 60 2e-112 402
WERAM-Leo-0143 ENSLOCP00000017300.1 Lepisosteus oculatus 59 2e-112 402
WERAM-Cap-0083 ENSCPOP00000005971.2 Cavia porcellus 59 3e-112 402
WERAM-Xim-0081 ENSXMAP00000007517.1 Xiphophorus maculatus 59 5e-112 401
WERAM-Chs-0115 ENSCSAP00000005710.1 Chlorocebus sabaeus 60 5e-112 401
WERAM-Loa-0005 ENSLAFP00000000421.3 Loxodonta africana 59 7e-112 400
WERAM-Bot-0074 ENSBTAP00000009482.5 Bos taurus 58 8e-112 400
WERAM-Meg-0057 ENSMGAP00000005254.2 Meleagris gallopavo 58 2e-111 399
WERAM-Anp-0099 ENSAPLP00000011801.1 Anas platyrhynchos 59 6e-111 397
WERAM-Gaga-0055 ENSGALP00000008151.4 Gallus gallus 58 1e-110 397
WERAM-Pes-0146 ENSPSIP00000017189.1 Pelodiscus sinensis 57 1e-110 396
WERAM-Mum-0132 ENSMUSP00000043828.4 Mus musculus 58 2e-110 396
WERAM-Ran-0042 ENSRNOP00000008962.5 Rattus norvegicus 59 2e-110 396
WERAM-Anc-0120 ENSACAP00000011278.3 Anolis carolinensis 59 2e-110 395
WERAM-Dio-0089 ENSDORP00000009107.1 Dipodomys ordii 59 5e-110 394
WERAM-Hov-0085 MLOC_6441.1 Hordeum vulgare 70 7e-110 394
WERAM-Otg-0083 ENSOGAP00000006490.2 Otolemur garnettii 59 9e-110 394
WERAM-Orn-0036 ENSONIP00000004088.1 Oreochromis niloticus 63 7e-109 390
WERAM-Sah-0048 ENSSHAP00000005466.1 Sarcophilus harrisii 58 1e-107 387
WERAM-Tag-0056 ENSTGUP00000003927.1 Taeniopygia guttata 60 1e-107 387
WERAM-Mae-0056 ENSMEUP00000005580.1 Macropus eugenii 57 4e-107 385
WERAM-Pem-0019 ENSPMAP00000002586.1 Petromyzon marinus 56 5e-107 385
WERAM-Mod-0065 ENSMODP00000010728.2 Monodelphis domestica 58 6e-107 384
WERAM-Fec-0086 ENSFCAP00000006953.3 Felis catus 61 6e-106 381
WERAM-Caf-0054 ENSCAFP00000006551.3 Canis familiaris 61 8e-106 380
WERAM-Nol-0049 ENSNLEP00000005908.2 Nomascus leucogenys 61 6e-105 378
WERAM-Sot-0090 PGSC0003DMT400076986 Solanum tuberosum 77 7e-105 377
WERAM-Dar-0190 ENSDARP00000109681.2 Danio rerio 56 1e-104 377
WERAM-Sus-0082 ENSSSCP00000012372.2 Sus scrofa 56 3e-102 369
WERAM-Cis-0041 ENSCSAVP00000009072.1 Ciona savignyi 55 6e-102 367
WERAM-Orp-0063 OPUNC06G17220.1 Oryza punctata 73 2e-101 366
WERAM-Lac-0082 ENSLACP00000010626.1 Latimeria chalumnae 53 1e-97 353
WERAM-Fia-0001 ENSFALP00000000041.1 Ficedula albicollis 64 5e-96 348
WERAM-Mim-0127 ENSMICP00000012962.1 Microcebus murinus 53 7e-96 347
WERAM-Gam-0017 ENSGMOP00000001513.1 Gadus morhua 51 8e-95 344
WERAM-Ova-0011 ENSOARP00000001712.1 Ovis aries 52 2e-93 340
WERAM-Cii-0063 ENSCINP00000027979.2 Ciona intestinalis 55 1e-89 327
WERAM-Asm-0175 ENSAMXP00000017267.1 Astyanax mexicanus 63 4e-89 325
WERAM-Ict-0088 ENSSTOP00000009419.2 Ictidomys tridecemlineatus 59 4e-88 322
WERAM-Drm-0083 FBpp0084109 Drosophila melanogaster 47 5e-86 315
WERAM-Dan-0117 ENSDNOP00000014714.2 Dasypus novemcinctus 62 2e-84 309
WERAM-Cae-0036 C35A5.9 Caenorhabditis elegans 44 7e-82 301
WERAM-Prc-0001 ENSPCAP00000000121.1 Procavia capensis 47 4e-80 295
WERAM-Chr-0007 EDP00102 Chlamydomonas reinhardtii 49 4e-72 268
WERAM-Pat-0124 ENSPTRP00000025262.3 Pan troglodytes 61 2e-69 259
WERAM-Orl-0079 KN539689.1_FGP004 Oryza longistaminata 55 6e-57 218
WERAM-Chh-0019 ENSCHOP00000001858.1 Choloepus hoffmanni 38 3e-52 202
WERAM-Ect-0025 ENSETEP00000001831.1 Echinops telfairi 40 2e-46 184
WERAM-Tub-0108 ENSTBEP00000012162.1 Tupaia belangeri 57 5e-46 182
WERAM-Ora-0107 ENSOANP00000020314.1 Ornithorhynchus anatinus 57 3e-40 163
WERAM-Amt-0062 ERN16364 Amborella trichopoda 68 3e-40 163
WERAM-Caj-0177 ENSCJAP00000031023.1 Callithrix jacchus 58 2e-36 150
WERAM-Tar-0078 ENSTRUP00000015330.1 Takifugu rubripes 31 3e-29 126
WERAM-Osl-0038 ABO99879 Ostreococcus lucimarinus 28 1e-26 118
WERAM-Cym-0025 CMQ158CT Cyanidioschyzon merolae 31 6e-24 108
WERAM-Xet-0128 ENSXETP00000044353.3 Xenopus tropicalis 26 6e-20 95.5
WERAM-Asg-0010 AAS51704 Ashbya gossypii 26 2e-18 90.5
WERAM-Miv-0013 MVLG_01994T0 Microbotryum violaceum 25 2e-17 87.4
WERAM-Tas-0086 ENSTSYP00000008784.1 Tarsius syrichta 24 5e-17 85.9
WERAM-Cag-0018 CAG60803 Candida glabrata 24 2e-16 83.6
WERAM-Vip-0110 ENSVPAP00000010202.1 Vicugna pacos 25 5e-16 82.4
WERAM-Kll-0020 CAG99415 Kluyveromyces lactis 25 6e-16 82.4
WERAM-Caa-0034 KGT64501 Candida albicans 24 2e-15 80.9
WERAM-Kop-0012 CAY68916 Komagataella pastoris 22 2e-15 80.5
WERAM-Soa-0084 ENSSARP00000008041.1 Sorex araneus 27 2e-15 80.5
WERAM-Mel-0007 EGF99116 Melampsora laricipopulina 25 3e-15 79.7
WERAM-Sac-0037 YNL021W Saccharomyces cerevisiae 24 5e-15 79.3
WERAM-Spr-0021 CBQ72644 Sporisorium reilianum 26 5e-15 79.3
WERAM-Pug-0033 EFP89819 Puccinia graminis 29 8e-15 78.6
WERAM-Scj-0003 EEB05565 Schizosaccharomyces japonicus 26 9e-15 78.6
WERAM-Scp-0016 SPAC3G9.07c.1:pep Schizosaccharomyces pombe 26 1e-14 78.2
Created Date 25-Jun-2016