WERAM Information

Tag Content
WERAM ID WERAM-Art-0006
Ensembl Protein ID AT1G06230.3
Uniprot Accession Q9LNC4; GTE4_ARATH
Genbank Protein ID NP_001184922.1; NP_172113.1; NP_849601.1
Protein Name Transcription factor GTE4
Genbank Nucleotide ID NM_001197993.1; NM_100505.2; NM_179270.1
Gene Name GTE4;At1g06230;F9P14.9
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G06230 AT1G06230.3 AT1G06230.3
AT1G06230 AT1G06230.1 AT1G06230.1
AT1G06230 AT1G06230.2 AT1G06230.2
Details
Type Family Domain Substrates AA References (PMIDs)
Ac_Reader Bromodomain Bromodomain K 12466527
Status Reviewed
Classification
Type Family E-value Score Start End
Ac_Reader Bromodomain 4.80e-24 85 434 504
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)		 Involved in the activation and maintenance of cell division in the meristems and by this controls cell numbers in differentiated organs. Its action in cell cycle regulation may be directed through the RB-E2F pathway.
Domain Profile
  Ac_Reader Bromodomain
    BROMO.txt   2 ehevsepFrepvdpq.leipdYydiikePmdLstikerleegnYsspeefvkDvrlifnNakaynenkssv 71 
                  +h++ ++F+ pvd + l + dYy+ii++PmdL tik+ l+++ Y+sp ef++Dvrl f+Na++yn+++++v
  AT1G06230.3 434 KHKHGWVFNAPVDVKgLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPREFAEDVRLTFHNAMTYNPEGQDV 504
                  799****************************************************************9987 PP
Protein Sequence
(Fasta)		MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV 60
SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP SENLPGDDSD KVIDKPLVEA 120
FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD 180
KNPIEAPSQT LSLEDGDTLV VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ 240
QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK 300
IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT 360
QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS KSSSKKQGGD VGHGFGAGTK 420
VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP 480
REFAEDVRLT FHNAMTYNPE GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL 540
PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN 600
EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL 660
WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA PAPAAHEFSR EGGNTAKKTL 720
PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT 766
Nucleotide Sequence
(Fasta)		CTCTCTCTTT TTTGTTGTTG TTGATTACAG ATGTAAATGT TTATGGGTAG AGCTTCTTTA 60
TGATATACGC GAAATTGATT AGTTTTTAGG CCCAAACCTA AAAAGCATTC CGGGTCGGGT 120
AAACGAGCCA AATCTAAACG CTGGTTCTTT TCTTCTCCTT CTTCTTCCTC TCGCTCTTGC 180
GGCGCCTTCT CTCTCCCAAA CTCGCAGTCT CTAAAGTTTG CACACTCTCT CAGAATCGAG 240
CCAAGGTTTC GTCTAGAAAT TAGGGTTTCT TAGTTTTTTC ATGGTGGAGG ATATATTTTA 300
GGCCGATTTG AGGGCTTTCC ATCAGTTTTA AACGGAGGAA GTGACGAAAA AGCATCAATC 360
GAGAGCAATT AAGGCGTGAA ATTAGGGTTT CTGAAGTATA TGTATGGCTT CGGAGCCTGT 420
TAACGGAGGA GAAGGTATCG ATGGAGCTAG AGAGAAGCAA ATCATCAAAG TTTATAAGAG 480
GAAAGGCAAA GGTCAAAGAA AACAGTCATC TTTCTTTGCC CTTGAGGCTG CCATCGAGAA 540
ACCTGAGGGG CTATTAGAAA ACGAGAATGA TAACAATGAT GTGAGTCCTG CCGAAACTCT 600
AGCTCCAGAG TTTGAGGATC CTATAGTTGT GGTGAAGAAT TCTATCGAAG AGGCTGCTCT 660
TGGGACTAAT TCTCATGGAG ACAAAAACTT AACTGAAGCG CCTTCTGAAA ACCTGCCTGG 720
TGATGATTCA GACAAAGTCA TTGACAAGCC TCTTGTCGAA GCATTTTCTC AAGCTCAACC 780
ACAGGATGAT GCCAGTTTGG CCGCTATGGA CAAGTCTGAA GAAGTACCTT CTCAGATCCC 840
CAAAGCTCAA GATGATGTCA ATACAGTGGT TGTTGATGAA AACTCTATCA AGGAACCTCC 900
TAAAAGCCTT GCCCAAGAAG ATGTTACCAC TGTGATTGTT GACAAGAACC CTATCGAAGC 960
ACCTTCTCAA ACCCTATCCC TGGAAGATGG TGATACTCTT GTTGTTGACA AGAATCCCAT 1020
TGAAGTGTCT TCTGAGGAAG ATGTCCACGT GATAGATGCA GATAATCTAA TAAAAGAAGC 1080
TCATCCTGAA AACTTTGTGG AAAGAGATAC CACTGATGCC CAACAGCCCG CTGGGCTTAC 1140
CTCTGATTCT GCTCATGCTA CTGCTGCTGG AAGCATGCCA ATGGAGGAGG ACGCAGATGG 1200
ACGTATTAGG ATACATGTAG CCTCCACAAC GAAGCAACAG AAAGAGGAGA TCAGGAAGAA 1260
GCTTGAAGAT CAGCTTAACG TAGTCAGAGG AATGGTAAAG AAGATAGAGG ATAAAGAGGG 1320
CGAGATTGGT GCATATAACG ATTCTCGTGT TTTGATTAAC ACTGGTATTA ATAATGGAGG 1380
AGGGAGGATT CTGTCAGGGT TTGCATCAGC TGGACTTCCT CGTGAGGTCA TTAGAGCACC 1440
AAGGCCTGTA AATCAACTAA GTATATCAGT GTTGGAGAAT ACTCAGGGAG TCAATGAGCA 1500
TGTGGAAAAG GAGAAAAGAA CACCCAAGGC AAATCAGTTT TATAGAAATT CAGAGTTTTT 1560
ACTTGGTGAC AAGTTACCAC CTGCAGAGAG TAACAAGAAA TCAAAATCGA GTTCAAAGAA 1620
GCAAGGAGGG GACGTTGGGC ATGGTTTTGG TGCAGGGACT AAAGTTTTCA AGAATTGCAG 1680
TGCTCTGCTT GAAAGGCTGA TGAAGCATAA GCATGGTTGG GTGTTCAATG CTCCAGTAGA 1740
CGTGAAGGGT CTAGGTTTAC TTGATTATTA CACCATTATC GAGCACCCTA TGGATTTGGG 1800
AACTATCAAG TCTGCGTTAA TGAAGAATTT GTACAAGTCA CCAAGAGAAT TTGCAGAGGA 1860
TGTTAGACTT ACTTTCCACA ATGCTATGAC TTACAACCCA GAAGGACAAG ATGTCCATCT 1920
CATGGCGGTT ACGCTATTAC AGATCTTTGA GGAAAGATGG GCTGTAATAG AGGCAGATTA 1980
TAATCGTGAA ATGAGATTTG TCACTGGTTA TGAAATGAAC CTTCCAACTC CTACAATGAG 2040
GTCTAGACTG GGTCCTACAA TGCCACCACC ACCTATCAAT GTGAGGAATA CGATAGACCG 2100
GGCAGACTGG AGTAATCGCC AACCAACTAC AACACCTGGA AGAACACCGA CCAGTGCAAC 2160
ACCTTCTGGA AGGACACCTG CTCTGAAGAA GCCAAAGGCA AACGAACCAA ATAAAAGAGA 2220
TATGACGTAT GAGGAGAAGC AGAAGCTTAG TGGCCATTTG CAGAACTTGC CTCCAGATAA 2280
ACTAGATGCA ATTGTACAAA TCGTTAACAA GAGGAATACT GCGGTGAAGC TACGGGATGA 2340
AGAAATTGAA GTTGATATTG ATAGTGTTGA TCCAGAGACC CTGTGGGAGT TGGACAGATT 2400
TGTAACCAAC TATAAAAAGG GCTTGAGCAA GAAAAAGAGA AAAGCTGAGC TAGCTATTCA 2460
AGCTAGAGCA GAAGCCGAGA GGAATAGCCA ACAACAGATG GCTCCAGCAC CAGCGGCACA 2520
TGAGTTTTCT AGAGAGGGTG GCAACACAGC TAAAAAGACA CTACCTACGC CATTACCTTC 2580
TCAAGTGGAG AAGCAAAACA ATGAGACAAG CAGATCAAGT AGTTCAAGCA GCTCTTCCAG 2640
TTCCAGCTCG TCTAGTGATT CAGACAGCGA CAGCTCTTCA TCATCTGGAT CAGATCAGAC 2700
CTAGAGGCTA GTGTACAAGA AGAGGGTTGG TGTTGACAAA TATGTAAGGG CGGTGAAGGT 2760
AGAGTAGAAG AGGATATGGG AAGTGAAAGA AGGAAGGATG ATGACGTACA GGCTTGAGGC 2820
AAGAGAAATA GTAGAGGAGT GGGATGGAAT GGAAGGAAAA AGATTGTGTA TCATATTCAT 2880
ATCACTGTTA GAGTAAAAAA AGAAAAATCT ATTATTCTTA GTTTTTGTTT GACTTAGGAG 2940
GATTATGCGT CTGTCTCTAC TTTTAGATGT AACCGTAGGG GTTGGGTTTG ATCTCTCACT 3000
TTGTATATCT CTCTTTGCCT CTCTGGTCTA TTTAGCGGTT TAGTT 3046
Sequence Source Ensembl
Keyword

KW-0103--Bromodomain
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
--
Interpro

IPR001487--Bromodomain
IPR027353--NET_dom
PROSITE

PS50014--BROMODOMAIN_2
PS51525--NET
Pfam

PF17035--BET
PF00439--Bromodomain
Gene Ontology

GO:0005634--C:nucleus
GO:0009294--P:DNA mediated transformation
GO:0045931--P:positive regulation of mitotic cell cycle
GO:0006355--P:regulation of transcription, DNA-templated
GO:0048364--P:root development
GO:0006351--P:transcription, DNA-templated
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0016 fgenesh1_pg.C_scaffold_1000493 Arabidopsis lyrata 92 0.0 1215
WERAM-Bro-0142 Bo8g006010.1 Brassica oleracea 74 0.0 984
WERAM-Brr-0077 Bra015485.1-P Brassica rapa 77 0.0 974
WERAM-Thc-0011 EOX94205 Theobroma cacao 61 2e-146 517
WERAM-Pot-0139 POPTR_0013s12320.1 Populus trichocarpa 60 2e-141 500
WERAM-Glm-0152 GLYMA12G33670.1 Glycine max 61 1e-133 474
WERAM-Prp-0041 EMJ12560 Prunus persica 59 3e-128 456
WERAM-Met-0054 KEH39252 Medicago truncatula 62 6e-128 455
WERAM-Viv-0072 VIT_12s0028g02510.t01 Vitis vinifera 56 6e-125 446
WERAM-Sot-0029 PGSC0003DMT400027384 Solanum tuberosum 55 5e-110 396
WERAM-Amt-0025 ERN13953 Amborella trichopoda 52 2e-102 371
WERAM-Sol-0098 Solyc07g062660.2.1 Solanum lycopersicum 48 1e-100 364
WERAM-Sei-0066 Si016549m Setaria italica 49 1e-81 301
WERAM-Zem-0006 GRMZM2G004741_P01 Zea mays 47 1e-79 295
WERAM-Mua-0105 GSMUA_Achr7P09350_001 Musa acuminata 45 3e-79 294
WERAM-Sob-0069 Sb04g009080.1 Sorghum bicolor 48 3e-79 294
WERAM-Lep-0026 LPERR02G09080.1 Leersia perrieri 44 3e-78 290
WERAM-Tra-0252 Traes_6AS_5C6CBFDEF.2 Triticum aestivum 51 2e-76 285
WERAM-Tru-0072 TRIUR3_27288-P1 Triticum urartu 51 4e-76 283
WERAM-Hov-0110 MLOC_78113.1 Hordeum vulgare 48 6e-76 283
WERAM-Aet-0072 EMT26738 Aegilops tauschii 51 1e-75 282
WERAM-Orb-0022 OBART02G10710.1 Oryza barthii 44 1e-75 281
WERAM-Orm-0024 OMERI02G11670.1 Oryza meridionalis 44 1e-75 281
WERAM-Org-0022 ORGLA02G0096900.1 Oryza glaberrima 43 1e-75 281
WERAM-Orni-0021 ONIVA02G11900.1 Oryza nivara 45 2e-75 281
WERAM-Ors-0020 OS02T0250300-01 Oryza sativa 45 2e-75 281
WERAM-Orr-0021 ORUFI02G10640.1 Oryza rufipogon 45 2e-75 281
WERAM-Orgl-0023 OGLUM02G10650.1 Oryza glumaepatula 45 3e-75 280
WERAM-Brd-0069 BRADI3G09460.1 Brachypodium distachyon 50 6e-75 279
WERAM-Orbr-0025 OB02G19550.1 Oryza brachyantha 48 7e-75 279
WERAM-Orl-0110 KN542696.1_FGP001 Oryza longistaminata 50 1e-74 278
WERAM-Ori-0024 BGIOSGA007894-PA Oryza indica 50 2e-74 278
WERAM-Orp-0002 OPUNC01G06960.1 Oryza punctata 57 3e-68 257
WERAM-Php-0015 PP1S13_29V6.1 Physcomitrella patens 39 3e-56 217
WERAM-Sem-0069 EFJ33224 Selaginella moellendorffii 38 4e-44 177
Created Date 25-Jun-2016