| Tag |
Content |
| WERAM ID |
WERAM-Arl-0095 |
| Ensembl Protein ID |
fgenesh2_kg.6__2585__AT5G26040.2 |
| Gene Name |
HDA2 |
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-IV |
1.10e-151 |
504.9 |
89 |
374 |
| HDAC |
Class-I |
1.10e-25 |
91.5 |
77 |
364 |
|
| Organism |
Arabidopsis lyrata |
| Domain Profile |
HDAC Class-IV
class-4.txt 1 leklhpfdaskwkkvikflkeeklledealveareaskedllvvhtrkylkslksslkvatiteiplvaflpnflvq 77
+eklhpfd+skw++v+kfl+++ +le++a+ve+ eask dllvvh+++yl+slkss++va+ite+p+vaf+pnflvq
fgenesh2_kg.6__2585__AT5G26040.2 89 IEKLHPFDSSKWGRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVPPVAFFPNFLVQ 165
79*************************************************************************** PP
class-4.txt 78 rkvlrplrlqagGtilaaklaverGwainvGGGfhhcsserGGGfcayaditlaikflferlkaisrviiidldahq 154
+kvl+p+r+q+gGtilaakla+erGwain+GGGfhhc++erGGGfca+adi+l+i+f+f rl+ isrv+iidldahq
fgenesh2_kg.6__2585__AT5G26040.2 166 QKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLR-ISRVMIIDLDAHQ 241
***************************************************************.************* PP
class-4.txt 155 GnGherdfaddkrvyildvynreiypkdrvakeairrkvelesgtedeeylekleralkkslqefepdlvvynaGtd 231
GnGhe+d+ dd+rvyild+yn++iyp+d++a+++i++++e+ sgt+++eyl+kl++al+ ++++f+p+lv+ynaGtd
fgenesh2_kg.6__2585__AT5G26040.2 242 GNGHETDLGDDNRVYILDMYNPNIYPFDYRARRFIDQNIEVVSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTD 318
***************************************************************************** PP
class-4.txt 232 vleGdrlGalkispegivkrdevvfrlvrakdipivmvtsGGyqkrsarviadsil 287
+l+Gd+lG lkisp+gi++rde+vfr++r+k+ip+vm+tsGGy+k+sarviadsi+
fgenesh2_kg.6__2585__AT5G26040.2 319 ILDGDPLGLLKISPDGITSRDEKVFRFAREKSIPLVMLTSGGYMKSSARVIADSIE 374
******************************************************95 PP
HDAC Class-I
class-1.txt 4 ayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepena.eel 79
y d++ + +++ hp +++ + +++++ g ++ iv+p +as+ +ll +hse+y++ lk++ + +e+
fgenesh2_kg.6__2585__AT5G26040.2 77 IYSSAYDISFMGIEKLHPFDSSKWGRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARiTEV 153
5666778888889999********9999999999*******************************987654440444 PP
class-1.txt 80 s..kelkkfnvgedcPvfdglfeycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlail. 153
+ + +f v++ + l+ + + + G+++ aa kL +e+ ain GG+hh ++ Gfc Di l i
fgenesh2_kg.6__2585__AT5G26040.2 154 PpvAFFPNFLVQQ-----KVLYPFRKQV-GGTILAA-KLA-TERGWAINIGGGFHHCTAERGGGFCAFADISLCIHf 222
4223444555554.....4688887776.5555444.554.57789***************************9963 PP
class-1.txt 154 ellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkygeeffPgtGdlsdvgaekgkyyavnvPlkdgidDes 229
+l+ +rv+ id+d h G+g e + +rv + y+++ +P ++ n+ + g ++
fgenesh2_kg.6__2585__AT5G26040.2 223 AFLRlRISRVMIIDLDAHQGNGHETDLGDDNRVYILD--MYNPNIYP-------FDYRARRFIDQNIEVVSGTTTDE 290
4555599**************************9865..68886666.......55566788999***999998888 PP
class-1.txt 230 yekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghae....cvkfvksfnlpllvlGGGGYtlr 299
y + + + ++ + f+Pe v+ + G+D l gD+lg ++s +g+++ + +f ++ +pl++l GGY +
fgenesh2_kg.6__2585__AT5G26040.2 291 YLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKISPDGITSrdekVFRFAREKSIPLVMLTSGGYMKS 364
888889999*********************************99864334489999999************764 PP
|
Protein Sequence
(Fasta) | MTDTRVISTW TELTRDSAIY LLFTFFAIKV YIFLFCCTRT SEMSSFSMAT HPEALRRERI 60
LNSKLYFDVP LSKVSIIYSS AYDISFMGIE KLHPFDSSKW GRVCKFLVSD GFLEEKAIVE 120
PLEASKIDLL VVHSENYLNS LKSSATVARI TEVPPVAFFP NFLVQQKVLY PFRKQVGGTI 180
LAAKLATERG WAINIGGGFH HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH 240
QGNGHETDLG DDNRVYILDM YNPNIYPFDY RARRFIDQNI EVVSGTTTDE YLRKLDEALE 300
VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKS IPLVMLTSGG 360
YMKSSARVIA DSIENLSRQG LIQTRPE 387Protein Fasta Sequence
>fgenesh2_kg.6__2585__AT5G26040.2|Class-I|Arabidopsis lyrata
MTDTRVISTWTELTRDSAIYLLFTFFAIKVYIFLFCCTRTSEMSSFSMATHPEALRRERILNSKLYFDVPLSKVSIIYSSAYDISFMGIEKLHPFDSSKWGRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVPPVAFFPNFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPNIYPFDYRARRFIDQNIEVVSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAREKSIPLVMLTSGGYMKSSARVIADSIENLSRQGLIQTRPE |
Nucleotide Sequence
(Fasta) | CAAAAAAATA TCTCACCGCT TCAGACCAAA ACCTCATATG ACAGATACCC GAGTCATCTC 60
GACCTGGACC GAGTTAACTC GCGACTCAGC TATTTACTTG CTCTTCACGT TTTTCGCCAT 120
CAAAGTCTAC ATATTTCTCT TCTGCTGTAC TCGAACCTCT GAAATGTCAT CGTTTTCGAT 180
GGCGACTCAT CCCGAAGCTC TCCGGCGAGA ACGAATTCTC AACAGCAAAC TCTACTTCGA 240
CGTTCCTCTT TCAAAGGTTT CGATTATCTA TTCATCGGCC TATGATATTT CGTTCATGGG 300
TATTGAGAAA TTGCATCCAT TTGATTCTTC CAAGTGGGGT AGAGTTTGCA AGTTCCTTGT 360
TTCAGATGGG TTTTTGGAGG AGAAAGCAAT TGTTGAGCCT CTTGAAGCTT CAAAGATTGA 420
TCTTTTAGTG GTACATTCTG AGAATTACTT AAACAGCTTG AAAAGTAGTG CCACTGTCGC 480
TAGGATAACC GAGGTTCCAC CAGTTGCCTT TTTTCCGAAT TTTCTTGTGC AGCAGAAAGT 540
TCTTTACCCA TTCCGAAAGC AGGTTGGTGG GACGATTCTG GCAGCTAAAC TCGCAACAGA 600
ACGTGGATGG GCAATAAATA TTGGAGGAGG TTTTCATCAT TGTACTGCGG AAAGAGGAGG 660
CGGATTTTGT GCTTTTGCTG ATATTTCTCT CTGTATTCAC TTTGCATTTC TTCGTCTGCG 720
AATCTCCAGG GTTATGATAA TAGATCTTGA TGCTCATCAA GGGAATGGCC ACGAAACAGA 780
TCTCGGCGAT GACAACCGCG TTTACATTCT GGATATGTAC AATCCCAATA TATACCCTTT 840
TGATTATAGA GCTAGGAGAT TTATCGATCA GAACATTGAG GTCGTGAGCG GGACCACCAC 900
CGATGAGTAT TTGAGGAAAC TAGATGAAGC CCTTGAGGTT GCTTCGCGAA ACTTCCAACC 960
GGAGTTGGTA ATTTACAATG CTGGGACAGA TATATTAGAT GGTGACCCTC TGGGACTTCT 1020
AAAGATAAGC CCTGATGGCA TAACGAGTAG AGACGAGAAA GTCTTCAGAT TTGCAAGGGA 1080
GAAAAGTATT CCTCTTGTGA TGCTAACTTC AGGCGGGTAC ATGAAGTCAA GCGCCAGAGT 1140
TATTGCGGAT TCCATTGAGA ATCTCTCACG ACAAGGGTTA ATCCAGACAC GACCGGAATA 1200
ATGTGTATAT TTGTATAGAG AGTTTAAGAG AGACCCTTAT GATGTGTTCG TCACCTTTGT 1260
ATATGTGTAC CTTTCCC
1278Nucleotide Fasta Sequence
>fgenesh2_kg.6__2585__AT5G26040.2|Class-I|Arabidopsis lyrata
CAAAAAAATATCTCACCGCTTCAGACCAAAACCTCATATGACAGATACCCGAGTCATCTCGACCTGGACCGAGTTAACTCGCGACTCAGCTATTTACTTGCTCTTCACGTTTTTCGCCATCAAAGTCTACATATTTCTCTTCTGCTGTACTCGAACCTCTGAAATGTCATCGTTTTCGATGGCGACTCATCCCGAAGCTCTCCGGCGAGAACGAATTCTCAACAGCAAACTCTACTTCGACGTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGGCCTATGATATTTCGTTCATGGGTATTGAGAAATTGCATCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTTTCAGATGGGTTTTTGGAGGAGAAAGCAATTGTTGAGCCTCTTGAAGCTTCAAAGATTGATCTTTTAGTGGTACATTCTGAGAATTACTTAAACAGCTTGAAAAGTAGTGCCACTGTCGCTAGGATAACCGAGGTTCCACCAGTTGCCTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTTCTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTCGCAACAGAACGTGGATGGGCAATAAATATTGGAGGAGGTTTTCATCATTGTACTGCGGAAAGAGGAGGCGGATTTTGTGCTTTTGCTGATATTTCTCTCTGTATTCACTTTGCATTTCTTCGTCTGCGAATCTCCAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCACGAAACAGATCTCGGCGATGACAACCGCGTTTACATTCTGGATATGTACAATCCCAATATATACCCTTTTGATTATAGAGCTAGGAGATTTATCGATCAGAACATTGAGGTCGTGAGCGGGACCACCACCGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACCGGAGTTGGTAATTTACAATGCTGGGACAGATATATTAGATGGTGACCCTCTGGGACTTCTAAAGATAAGCCCTGATGGCATAACGAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGAGAAAAGTATTCCTCTTGTGATGCTAACTTCAGGCGGGTACATGAAGTCAAGCGCCAGAGTTATTGCGGATTCCATTGAGAATCTCTCACGACAAGGGTTAATCCAGACACGACCGGAATAATGTGTATATTTGTATAGAGAGTTTAAGAGAGACCCTTATGATGTGTTCGTCACCTTTGTATATGTGTACCTTTCCC
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
