WERAM Information

Tag Content
WERAM ID WERAM-Arl-0089
Ensembl Protein ID fgenesh2_kg.5__872__AT3G44750.1
Gene Name HD2A
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.5__872__AT3G44750.1 fgenesh2_kg.5__872__AT3G44750.1 fgenesh2_kg.5__872__AT3G44750.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 2.00e-52 202
Organism Arabidopsis lyrata
Domain Profile
  HDAC HD2
Query: 1  MEFWGIEVKPGKPVTVTPKEGTLIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60
          MEFWGIEVK GKPVTVTP+EG LIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST
Sbjct: 1  MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60
Query: 61 ENIPQLFCDLVFEKEFELSHTWGKGSVYFVGYKTPNIK 98
          ENIPQLFCDLVF+KEFELSHTWGKGSVYFVGYKTPNI+
Sbjct: 61 ENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPNIE 98
Query: 166 PTPKKPASNKKRANETAPKTPVSSKKAKVAVTPQKTGKDINTPKPATQSPKSASQVSCGS 225
           PTPKKPAS+KKRANET PK PVS+KKAKVAVTPQKT +     K A QSPKSASQVSCGS
Sbjct: 163 PTPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTDEKKKGGKAANQSPKSASQVSCGS 222
Query: 226 CKKTFNSGNALEAHNKAKHSAA 247
           CKKTFNSGNALE+HNKAKH+AA
Sbjct: 223 CKKTFNSGNALESHNKAKHAAA 244
Protein Sequence
(Fasta)		MEFWGIEVKP GKPVTVTPKE GTLIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST 60
ENIPQLFCDL VFEKEFELSH TWGKGSVYFV GYKTPNIKYP LNSEEEEEEV EEVPAGNAAK 120
AVAKPKAKPA EVKPVADAEE DDSDSDEMDE DDSDGDDDSE EEEETPTPKK PASNKKRANE 180
TAPKTPVSSK KAKVAVTPQK TGKDINTPKP ATQSPKSASQ VSCGSCKKTF NSGNALEAHN 240
KAKHSAA 247
Nucleotide Sequence
(Fasta)		TCTTTCATTT TTAGCTGCTC ATAAACCCTA AAAATCCTCT CTTTCTCAAC CTCGATTCTT 60
AGCTATGGAG TTCTGGGGAA TTGAAGTTAA ACCAGGGAAG CCAGTTACAG TGACTCCTAA 120
AGAAGGCACT CTTATCCACG TTTCTCAGGC ATCGCTTGGA GAATGTAAAA ACAAGAAAGG 180
AGAATTTGTG CCTTTACATG TTAAGGTTGG TAACCAGAAC TTGGTTCTGG GAACTCTATC 240
AACTGAGAAC ATCCCTCAGC TTTTCTGTGA TTTGGTATTC GAAAAGGAGT TTGAGCTTTC 300
TCACACTTGG GGAAAAGGAA GTGTCTACTT TGTTGGATAC AAAACTCCCA ACATCAAATA 360
TCCTTTGAAT TCAGAGGAAG AAGAGGAAGA GGTTGAAGAA GTTCCTGCAG GGAATGCTGC 420
TAAGGCTGTA GCAAAACCAA AGGCTAAGCC TGCAGAAGTG AAGCCGGTTG CTGATGCTGA 480
AGAGGATGAC TCTGATTCCG ACGAAATGGA TGAAGATGAT TCTGATGGTG ATGACGATTC 540
AGAGGAAGAA GAAGAGACAC CTACTCCTAA GAAGCCTGCA TCAAACAAGA AGAGAGCAAA 600
TGAAACTGCC CCTAAAACAC CTGTGTCATC AAAGAAGGCG AAAGTAGCAG TTACTCCTCA 660
GAAAACAGGT AAAGATATAA ACACCCCCAA GCCTGCTACC CAGAGCCCAA AGTCGGCCAG 720
TCAAGTCTCC TGCGGTTCAT GCAAAAAGAC TTTCAACTCT GGGAATGCAC TTGAGGCTCA 780
CAACAAGGCC AAGCATTCTG CCGCCAAGTG AAGTGGTTTC TTAGAGCTTA TGATATCTTT 840
GAAATTTTGC CTCTAGTCTT TATGAAACCT TCGGATTTTC AGTCTTAATG AAAGAGTGCC 900
AATTGGAGTC TTATCTCCAC TATATTTCAA CATTCTATCT AGGCACAA 949
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 95 2e-52 202
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 60 9e-32 134
WERAM-Pot-0109 POPTR_0009s15160.1 Populus trichocarpa 67 3e-30 129
WERAM-Thc-0115 EOY33573 Theobroma cacao 64 3e-30 129
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 63 3e-28 122
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 61 3e-28 122
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 62 9e-28 120
WERAM-Sot-0008 PGSC0003DMT400006927 Solanum tuberosum 57 1e-27 120
WERAM-Sol-0107 Solyc09g009030.2.1 Solanum lycopersicum 57 2e-27 119
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 60 3e-27 119
WERAM-Prp-0078 EMJ06874 Prunus persica 56 5e-26 115
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 52 5e-26 115
WERAM-Sei-0085 Si022778m Setaria italica 56 1e-24 110
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 56 2e-24 110
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 55 2e-24 109
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 54 3e-24 108
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 54 3e-24 108
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 54 4e-24 108
WERAM-Aet-0097 EMT09079 Aegilops tauschii 54 5e-24 108
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 56 7e-24 108
WERAM-Met-0051 KEH38943 Medicago truncatula 53 1e-22 103
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 53 8e-22 101
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 48 8e-21 97.8
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 51 1e-20 97.4
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 54 1e-20 97.1
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 54 1e-20 97.1
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 54 2e-20 97.1
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 48 9e-19 90.9
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 48 1e-18 90.9
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 51 9e-18 87.8
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 43 1e-15 80.9
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 38 1e-13 74.3
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 33 6e-11 65.1
WERAM-Amt-0052 ERN12770 Amborella trichopoda 62 6e-11 65.1
WERAM-Orm-0015 OMERI01G38270.1 Oryza meridionalis 30 1e-07 53.9
Created Date 25-Jun-2016