WERAM Information

Tag Content
WERAM ID WERAM-Arl-0035
Ensembl Protein ID fgenesh1_pm.C_scaffold_4000660
Gene Name HDT4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh1_pm.C_scaffold_4000660 fgenesh1_pm.C_scaffold_4000660 fgenesh1_pm.C_scaffold_4000660
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 5.00e-52 200
Organism Arabidopsis lyrata
Domain Profile
  HDAC HD2
Query: 1   MEFWGIEIKPEKPFKMISKDGYMVHANQVTLGEVDKVKEDENVPVYVKIGDDKSGFIIGN 60
           MEFWGIEIKP KPFK+I KDG+MVHA+QVTLG+V+KVK+DE   VYVKIGDD++GF+IGN
Sbjct: 1   MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGN 60
Query: 61  LSQKFPQVSLDIFLGHEFEISHNSKTSVYLIGYRTPMDEQYPLFHCLFFSSIHDSELEEF 120
           LSQKFPQ S+D++LGHEFEISHNS +SVYLIGYRT     +  F  L      DSEL+E+
Sbjct: 61  LSQKFPQFSIDLYLGHEFEISHNSTSSVYLIGYRT-----FDAFDELDEEIDSDSELDEY 115
Query: 121 MEQQIDALPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQVPPSKKMSNG 180
           MEQQI ALPQ                                      A  PPSKKM NG
Sbjct: 116 MEQQIAALPQNEINPEEDDESDSDEMGLDEDDDSSDEEDVEAEAPLKVA--PPSKKMPNG 173
Query: 181 IHGIPXXXXXXXXXXXXXRCPFPCGSSCKK 210
              I              RCPFPCG SCKK
Sbjct: 174 AFEIAKGGKKNKSSGGKKRCPFPCGPSCKK 203
Protein Sequence
(Fasta)		MEFWGIEIKP EKPFKMISKD GYMVHANQVT LGEVDKVKED ENVPVYVKIG DDKSGFIIGN 60
LSQKFPQVSL DIFLGHEFEI SHNSKTSVYL IGYRTPMDEQ YPLFHCLFFS SIHDSELEEF 120
MEQQIDALPQ NEMNNEMNPE EDGSSDDSDE MGLDEDDESS DEEDVEAEAQ VPPSKKMSNG 180
IHGIPKGGDK NKSSGGKKRC PFPCGSSCKK
Nucleotide Sequence
(Fasta)		ATGGAGTTTT GGGGTATTGA GATTAAGCCA GAGAAGCCTT TTAAGATGAT TTCAAAAGAT 60
GGATACATGG TCCATGCCAA TCAGGTTACT CTTGGTGAGG TTGACAAGGT TAAAGAAGAT 120
GAGAATGTTC CCGTTTATGT GAAGATTGGT GATGATAAGA GTGGGTTTAT CATTGGAAAC 180
CTCTCGCAGA AGTTTCCTCA AGTTTCTCTT GATATCTTCT TAGGGCATGA GTTTGAGATT 240
TCTCACAACT CTAAAACAAG TGTCTATCTT ATTGGCTACA GGACCCCTAT GGACGAACAA 300
TATCCTTTGT TTCATTGCCT TTTTTTTAGT TCAATTCATG ATTCTGAGTT AGAGGAATTT 360
ATGGAACAAC AAATTGATGC TTTGCCTCAA AATGAGATGA ATAATGAGAT GAATCCTGAA 420
GAAGATGGGT CATCCGACGA CTCAGATGAG ATGGGTTTGG ACGAGGATGA TGAGTCTTCG 480
GATGAAGAAG ACGTAGAGGC TGAAGCACAG GTTCCTCCGA GCAAGAAGAT GTCAAATGGT 540
ATACATGGGA TACCTAAAGG TGGAGACAAG AACAAGTCAT CAGGAGGGAA AAAGAGATGT 600
CCATTCCCTT GTGGTTCTTC CTGCAAAAAG TAG 634
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Art-0046 AT2G27840.1 Arabidopsis thaliana 64 8e-52 200
WERAM-Brr-0167 Bra034373.1-P Brassica rapa 58 1e-25 113
WERAM-Bro-0080 Bo4g164870.1 Brassica oleracea 57 6e-25 110
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 44 2e-18 89.4
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 46 2e-17 86.7
WERAM-Aet-0097 EMT09079 Aegilops tauschii 48 4e-17 85.1
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 43 7e-17 84.3
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 44 7e-17 84.3
WERAM-Met-0051 KEH38943 Medicago truncatula 38 1e-15 80.5
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 42 1e-15 80.5
WERAM-Prp-0078 EMJ06874 Prunus persica 48 2e-15 79.7
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 44 2e-15 79.7
WERAM-Orb-0013 OBART01G41240.1 Oryza barthii 50 4e-15 78.6
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 40 5e-15 78.2
WERAM-Thc-0115 EOY33573 Theobroma cacao 42 5e-15 78.2
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 50 6e-15 77.8
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 50 6e-15 77.8
WERAM-Sei-0085 Si022778m Setaria italica 44 7e-15 77.8
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 45 2e-14 76.6
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 45 2e-14 76.6
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 45 2e-14 75.9
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 43 1e-13 73.9
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 41 1e-13 73.2
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 41 5e-13 71.6
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 44 6e-13 71.2
WERAM-Sot-0008 PGSC0003DMT400006927 Solanum tuberosum 38 9e-13 70.9
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 43 9e-13 70.9
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 41 7e-12 67.8
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 42 8e-11 64.3
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 33 8e-10 60.8
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 38 8e-08 54.3
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 30 9e-07 50.8
Created Date 25-Jun-2016