WERAM Information

Tag Content
WERAM ID WERAM-Arl-0026
Ensembl Protein ID fgenesh1_pg.C_scaffold_6000249
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh1_pg.C_scaffold_6000249 fgenesh1_pg.C_scaffold_6000249 fgenesh1_pg.C_scaffold_6000249
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 5.00e-61 231
Organism Arabidopsis lyrata
Domain Profile
  HDAC HD2
Query: 1   MESSGVEVKNGTPLHIDPGVDMLVHISQVALGENESNVTEPIQLYVTVGQDKLLIGTLSH 60
           ME  GVEVKNG PLH+DPG+D LVHISQVALGE+++NVTEPIQLYVTVG DKLLIGTLSH
Sbjct: 1   MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTVGSDKLLIGTLSH 60
Query: 61  ERFPQLATEIVLERNFALSHTWKNGSVFFSGYKVDASDDPYPLFFVDEYHLGNCCFXXXX 120
           E+FPQL+TEIVLERNFALSHTWKNGSVFFSGYKVDAS DP P   +D+            
Sbjct: 61  EKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDAS-DPEPEDLIDD------------ 107
Query: 121 XXXXXXXXXXDNTTDAELEAAGYRAAPKSAAKQVNFQLPNEDVKAKQ 167
                           +LEAAG++AAPKSAAKQVNFQLPNEDVKAKQ
Sbjct: 108 ----------------QLEAAGFKAAPKSAAKQVNFQLPNEDVKAKQ 138
Query: 250 FVTPQKTETKKPHVHVATPHPSKQXXXXXXXXXXXEKAKQQQTPKSAGAFGCKSCSRTFT 309
           FVTPQKT++KKPHVHVATPHPSKQ           E +KQQQTPKSAGAFGCKSC+RTFT
Sbjct: 218 FVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFT 277
Query: 310 SEMGLQSHTKAKHSAAA 326
           SEMGLQSHTKAKHSAAA
Sbjct: 278 SEMGLQSHTKAKHSAAA 294
Protein Sequence
(Fasta)		MESSGVEVKN GTPLHIDPGV DMLVHISQVA LGENESNVTE PIQLYVTVGQ DKLLIGTLSH 60
ERFPQLATEI VLERNFALSH TWKNGSVFFS GYKVDASDDP YPLFFVDEYH LGNCCFTLFL 120
TSLTLYLTVT DNTTDAELEA AGYRAAPKSA AKQVNFQLPN EDVKAKQDDE ADDSEEESSD 180
DDENSNSEDS GDEEVAAAVG SEEDDEDDSS DDEEDDSSEE ETPKKPEEPK KRSAEANSSK 240
NPASNKKAKF VTPQKTETKK PHVHVATPHP SKQGGNNSGG SSIGEKAKQQ QTPKSAGAFG 300
CKSCSRTFTS EMGLQSHTKA KHSAAA 326
Nucleotide Sequence
(Fasta)		ATGGAATCGT CTGGTGTTGA AGTTAAGAAT GGCACACCAC TTCATATAGA TCCTGGGGTA 60
GATATGCTCG TGCACATCTC ACAGGTTGCT TTGGGAGAGA ATGAGAGCAA TGTAACCGAA 120
CCAATCCAGC TTTACGTGAC AGTTGGACAG GATAAGCTTC TCATTGGAAC GCTATCTCAT 180
GAGAGGTTTC CTCAGCTGGC TACGGAGATT GTGTTGGAAA GGAACTTTGC GCTGTCTCAT 240
ACTTGGAAGA ATGGGAGCGT TTTCTTCTCT GGTTACAAAG TTGATGCATC TGATGATCCA 300
TATCCTTTAT TCTTTGTTGA TGAATATCAT TTGGGGAATT GTTGTTTTAC TCTGTTTTTG 360
ACTTCCTTGA CTCTCTATCT CACCGTGACT GATAATACGA CTGACGCTGA ACTTGAGGCT 420
GCTGGTTACA GAGCTGCTCC GAAATCAGCT GCGAAACAGG TGAACTTTCA ATTGCCAAAT 480
GAAGATGTCA AGGCCAAGCA AGATGATGAA GCTGATGATA GTGAAGAGGA GTCTTCAGAT 540
GATGATGAGA ACTCTAACTC TGAAGACTCT GGAGATGAGG AGGTTGCTGC TGCAGTTGGC 600
AGTGAGGAAG ATGATGAAGA TGACTCATCA GACGACGAAG AAGATGACTC ATCAGAGGAG 660
GAGACCCCAA AGAAGCCTGA AGAACCCAAG AAGAGGTCTG CAGAAGCCAA CTCCTCCAAG 720
AACCCTGCTT CCAACAAGAA GGCTAAGTTC GTAACTCCTC AGAAAACAGA GACAAAGAAA 780
CCGCATGTCC ATGTTGCAAC TCCTCATCCA TCAAAACAGG GGGGTAATAA TTCTGGTGGA 840
AGCAGCATTG GAGAGAAAGC GAAGCAGCAG CAGACACCGA AGTCTGCAGG AGCGTTTGGG 900
TGCAAGTCGT GCAGCAGGAC CTTTACTTCG GAAATGGGAT TGCAGTCTCA CACAAAGGCC 960
AAACACAGTG CAGCTGCTTG A 982
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Art-0114 AT5G03740.1 Arabidopsis thaliana 70 8e-61 231
WERAM-Brr-0050 Bra009513.1-P Brassica rapa 49 5e-38 155
WERAM-Bro-0186 Bo9g181760.1 Brassica oleracea 46 3e-32 136
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 54 6e-26 115
WERAM-Thc-0115 EOY33573 Theobroma cacao 49 7e-24 108
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 51 2e-23 107
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 49 2e-23 107
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 47 4e-23 105
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 50 2e-22 104
WERAM-Sei-0085 Si022778m Setaria italica 48 6e-19 92.0
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 48 1e-18 91.7
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 45 1e-18 91.7
WERAM-Zem-0062 GRMZM2G100146_P01 Zea mays 47 3e-18 89.7
WERAM-Prp-0077 EMJ03579 Prunus persica 47 3e-18 89.7
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 46 5e-18 89.4
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 46 5e-18 89.4
WERAM-Met-0051 KEH38943 Medicago truncatula 40 3e-17 86.7
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 44 5e-17 85.9
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 42 7e-17 85.1
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 39 1e-16 84.7
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 46 2e-16 84.0
WERAM-Aet-0097 EMT09079 Aegilops tauschii 44 3e-16 83.2
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 46 1e-15 81.6
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 42 5e-14 75.9
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 44 1e-13 75.1
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 41 3e-12 70.1
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 41 3e-12 70.1
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 51 8e-12 68.6
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 34 9e-12 68.6
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 37 8e-11 65.5
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 37 8e-11 65.5
WERAM-Amt-0052 ERN12770 Amborella trichopoda 40 7e-10 62.0
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 44 5e-08 55.8
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 36 1e-07 54.3
Created Date 25-Jun-2016