WERAM Information

Tag Content
WERAM ID WERAM-Viv-0052
Ensembl Protein ID VIT_08s0007g03940.t01
Gene Name VIT_08s0007g03940
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
VIT_08s0007g03940 VIT_08s0007g03940.t01 VIT_08s0007g03940.t01
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 8.00e-32 134
HDAC HD2 2.00e-30 129
Organism Vitis vinifera
Domain Profile
  HDAC HD2
Query: 1   MEFWGVEVKAGEPLEVVPGDDMLVHISQASLGEIKKDKGNELVCLYANIGGQKLVLGTLS 60
           MEFWGVEVK G+PL + PG D LVHISQ +LGE  K+   E + LY  +G  KL++GTLS
Sbjct: 1   MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLS 59
Query: 61  AEKFPQISFDLVFEKKFELSHNWKNGSVYFCGYKAANSVEYPFHGKPQQLKQEKPESA-- 118
            EKFPQ+S ++V E+ F LSH WKNGSV+F GYK   S   P      QL+    ++A  
Sbjct: 60  HEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASDPEPEDLIDDQLEAAGFKAAPK 119
Query: 119 -AAKQVKIVEPNKDAKSPKEN 138
            AAKQV    PN+D K+ +++
Sbjct: 120 SAAKQVNFQLPNEDVKAKQDD 140
Query: 210 SKTPVPDKKAKFVTPQKTXXXXXXXXXXXXHVATPYPSKQAGK-----TPANTEKPKQQV 264
           SK P  +KKAKFVTPQKT            HVATP+PSKQAGK     +   T K +QQ 
Sbjct: 207 SKNPASNKKAKFVTPQKTDSKKPHV-----HVATPHPSKQAGKNSGGGSTGETSK-QQQT 260
Query: 265 QKSGGSFSCKSCNRSFNSENALQSHTKAKHTAA 297
            KS G+F CKSC R+F SE  LQSHTKAKH+AA
Sbjct: 261 PKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSAA 293
  HDAC HD2
Query: 1  MEFWGVEVKAGEPLEVVPGDDMLVHISQASLGEIKKDKGNELVCLYANIGGQKLVLGTLS 60
          MEFWG+EVK+G+P+ V P + +L+H+SQASLGE K  KG E V L+  +G Q LVLGTLS
Sbjct: 1  MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLS 59
Query: 61 AEKFPQISFDLVFEKKFELSHNWKNGSVYFCGYKAAN 97
           E  PQ+  DLVF+K+FELSH W  GSVYF GYK  N
Sbjct: 60 TENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPN 96
Query: 194 TPKKAGPSKKRPTESVSKTPVPDKKAKF-VTPQKTXXXXXXXXXXXXHVATPYPSKQAGK 252
           TPKK   SKKR  E+  K PV  KKAK  VTPQKT                    K+ G 
Sbjct: 164 TPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTD------------------EKKKGG 205
Query: 253 TPANTEKPKQQVQKSGGSFSCKSCNRSFNSENALQSHTKAKHTAAK 298
             AN      Q  KS    SC SC ++FNS NAL+SH KAKH AAK
Sbjct: 206 KAAN------QSPKSASQVSCGSCKKTFNSGNALESHNKAKHAAAK 245
Protein Sequence
(Fasta)		MEFWGVEVKA GEPLEVVPGD DMLVHISQAS LGEIKKDKGN ELVCLYANIG GQKLVLGTLS 60
AEKFPQISFD LVFEKKFELS HNWKNGSVYF CGYKAANSVE YPFHGKPQQL KQEKPESAAA 120
KQVKIVEPNK DAKSPKENDD DSDKDSDESM DDEDESSEDE DMVNDRSASS EDEDDDENED 180
NEDDKNEISK KKETPKKAGP SKKRPTESVS KTPVPDKKAK FVTPQKTDGK KSDDKKSGGH 240
VATPYPSKQA GKTPANTEKP KQQVQKSGGS FSCKSCNRSF NSENALQSHT KAKHTAAK 298
Nucleotide Sequence
(Fasta)		TCTTTCTCTC TCTCTCTGTA TATATAAATA TATCATCGAA CAGCCCTAAC ACTCTCATTC 60
CATCTTTCAG TTCCAGGATC TGGCATTGAA AACCCTAATT GATCGGTCTC GACATTCAAA 120
TGGAGTTTTG GGGTGTTGAG GTCAAAGCAG GAGAGCCTCT CGAGGTGGTA CCTGGGGATG 180
ACATGCTTGT TCACATTTCA CAGGCTTCTC TCGGAGAAAT CAAGAAGGAC AAAGGAAATG 240
AGTTGGTTTG TCTATATGCA AATATTGGTG GGCAGAAGCT TGTTCTTGGA ACACTTTCTG 300
CCGAGAAATT CCCACAGATC TCGTTTGACT TGGTGTTTGA AAAAAAATTT GAGCTATCCC 360
ACAACTGGAA AAATGGGAGT GTGTACTTTT GTGGATATAA AGCTGCTAAT TCAGTGGAAT 420
ATCCTTTTCA TGGGAAGCCT CAACAGCTTA AGCAAGAGAA ACCTGAGTCT GCTGCAGCTA 480
AGCAGGTGAA GATCGTAGAA CCAAACAAAG ATGCTAAATC ACCCAAGGAA AATGATGATG 540
ATAGCGACAA AGATAGTGAT GAATCAATGG ATGATGAAGA TGAATCATCT GAGGATGAGG 600
ATATGGTCAA TGATAGAAGT GCAAGCTCAG AGGATGAAGA TGATGATGAG AATGAAGACA 660
ATGAGGATGA CAAAAATGAA ATCTCTAAGA AGAAAGAGAC ACCAAAGAAG GCTGGACCAA 720
GCAAGAAAAG ACCTACAGAG TCTGTTTCAA AAACACCTGT TCCTGATAAG AAGGCAAAAT 780
TTGTTACTCC CCAAAAGACT GATGGCAAAA AAAGTGATGA CAAAAAGAGT GGTGGTCATG 840
TAGCAACACC TTACCCTTCA AAGCAGGCTG GAAAAACTCC TGCAAACACA GAAAAACCTA 900
AGCAGCAGGT TCAGAAATCT GGTGGATCAT TCTCTTGCAA GTCTTGCAAC AGGTCATTCA 960
ATTCTGAGAA TGCTCTACAA AGTCATACCA AGGCCAAGCA CACTGCTGCT AAGTAAAGAG 1020
AGGTAAATCC AGTAGTTCCT TGTGTGAAGC TCAAACTTGT CTTTTTAGCT GGTGAACTGA 1080
GTCATTGTCT TAATGTCCAC GGAGTTTATT ACTGAAAACT TGGTGGGATG GATTTTGGTG 1140
TTATTTTTAC CTCTTGTTGA TGAATGTCTC TTGGTCATCT GTTAATATAA AATAACATCC 1200
ATTTTCCTTT CATAAAGA 1219
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 73 5e-41 165
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 72 3e-40 162
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 68 2e-35 146
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 70 4e-35 145
WERAM-Thc-0115 EOY33573 Theobroma cacao 66 9e-33 137
WERAM-Art-0114 AT5G03740.1 Arabidopsis thaliana 50 1e-31 134
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 60 2e-31 133
WERAM-Mua-0006 GSMUA_Achr10P04780_001 Musa acuminata 61 7e-31 131
WERAM-Met-0051 KEH38943 Medicago truncatula 62 7e-30 128
WERAM-Bro-0186 Bo9g181760.1 Brassica oleracea 61 3e-29 126
WERAM-Prp-0078 EMJ06874 Prunus persica 48 3e-29 125
WERAM-Brr-0050 Bra009513.1-P Brassica rapa 60 2e-28 123
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 59 3e-28 123
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 58 6e-28 121
WERAM-Aet-0097 EMT09079 Aegilops tauschii 57 8e-28 121
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 60 1e-27 121
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 55 2e-27 120
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 55 2e-27 120
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 59 2e-26 117
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 59 3e-26 116
WERAM-Sei-0085 Si022778m Setaria italica 51 6e-25 112
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 57 1e-24 110
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 55 1e-23 107
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 55 6e-23 105
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 55 7e-23 105
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 53 7e-23 105
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 49 1e-22 104
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 54 8e-20 94.7
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 45 3e-18 89.7
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 46 2e-17 87.4
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 46 2e-17 87.4
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 38 5e-16 82.4
WERAM-Amt-0052 ERN12770 Amborella trichopoda 72 2e-15 80.9
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 33 6e-11 65.5
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 33 7e-10 62.0
Created Date 25-Jun-2016