WERAM Information

Tag Content
WERAM ID WERAM-Sol-0131
Ensembl Protein ID Solyc10g085560.1.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Solyc10g085560.1 Solyc10g085560.1.1 Solyc10g085560.1.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 3.00e-26 115
Organism Solanum lycopersicum
Domain Profile
  HDAC HD2
Query: 1  MEFWGAEVKSGQPLSVQPGDDMVLHLSQASLGEVKKDKASEPVCLSVTIDGKKLVLGTLS 60
          MEFWG EVK+G+PL + PG D ++H+SQ +LGE  K+  +EP+ L VT+   KL++GTLS
Sbjct: 1  MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLS 59
Query: 61 LDKLPQQQFDLVFDRDFELSHNWKNGSVYFFGYK 94
           +K PQ   ++V +R+F LSH WKNGSV+F GYK
Sbjct: 60 HEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYK 93
Query: 225 SAAKTPVPDKKTKFLTPQKTDGKKGAVHVATPHPSKQAGKTPG-------NKPNQTPKSG 277
           +++K P  +KK KF+TPQKTD KK  VHVATPHPSKQAGK  G       +K  QTPKS 
Sbjct: 205 NSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSA 264
Query: 278 GSLACKTCNRTFGSENALESHSKAKHSAG 306
           G+  CK+C RTF SE  L+SH+KAKHSA 
Sbjct: 265 GAFGCKSCTRTFTSEMGLQSHTKAKHSAA 293
Protein Sequence
(Fasta)		MEFWGAEVKS GQPLSVQPGD DMVLHLSQAS LGEVKKDKAS EPVCLSVTID GKKLVLGTLS 60
LDKLPQQQFD LVFDRDFELS HNWKNGSVYF FGYKAANPFE EYPFLFFYFL FVSLTTIVCD 120
TEEDVDEVED ESDEEIPLSI ANNGKTEAKA SAKDSASTKQ KVRVIEFTKV DKAEDQDEST 180
DESADEDDSM MGEDEEGDSD EDQSDESEEE TPKKAEPSRK RPADSAAKTP VPDKKTKFLT 240
PQKTDGKKGA VHVATPHPSK QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK 300
AKHSAGK 307
Nucleotide Sequence
(Fasta)		ATGGAATTTT GGGGTGCGGA GGTGAAAAGT GGACAACCTT TATCTGTACA GCCGGGAGAT 60
GACATGGTTT TGCATCTTTC ACAGGCATCT CTTGGTGAGG TGAAAAAGGA TAAAGCATCA 120
GAACCTGTAT GCTTGTCTGT AACTATTGAT GGCAAGAAGC TTGTTCTTGG CACACTCAGC 180
TTAGATAAGC TGCCTCAACA ACAATTTGAC CTGGTTTTTG ATAGAGACTT TGAACTATCA 240
CACAACTGGA AAAATGGTAG CGTCTACTTT TTTGGATACA AGGCTGCCAA CCCATTCGAG 300
GAATATCCTT TTCTGTTTTT CTACTTTCTT TTTGTTTCCT TGACTACAAT TGTGTGTGAT 360
ACTGAGGAGG ATGTAGATGA AGTTGAAGAT GAGTCTGATG AGGAAATACC CCTTTCAATT 420
GCAAACAATG GAAAGACTGA AGCCAAGGCT AGTGCAAAGG ATTCTGCTTC AACTAAGCAG 480
AAGGTGAGGG TTATAGAGTT TACTAAAGTT GACAAGGCGG AAGATCAAGA TGAGAGCACT 540
GATGAGTCTG CGGATGAAGA TGATTCTATG ATGGGGGAGG ATGAAGAAGG TGATAGTGAT 600
GAAGATCAGT CTGATGAGAG TGAGGAGGAG ACACCAAAGA AGGCTGAACC TAGTAGAAAG 660
AGACCTGCAG ATTCTGCTGC AAAAACACCT GTTCCTGATA AAAAGACAAA ATTCTTAACT 720
CCTCAAAAGA CTGATGGTAA GAAAGGTGCT GTTCATGTGG CAACCCCTCA CCCCTCAAAA 780
CAGGCTGGTA AGACTCCTGG AAACAAGCCA AACCAGACTC CAAAATCTGG CGGATCACTT 840
GCCTGCAAGA CATGCAACAG GACTTTTGGT TCTGAAAATG CTCTGGAATC TCACTCGAAA 900
GCTAAGCACA GCGCTGGAAA GTAA 925
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 85 5e-111 397
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 73 1e-39 160
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 67 5e-32 135
WERAM-Thc-0115 EOY33573 Theobroma cacao 65 1e-31 134
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 62 6e-31 131
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 65 5e-29 125
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 64 4e-28 122
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 62 5e-28 122
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 60 3e-27 119
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 58 4e-27 119
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 62 9e-27 117
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 59 1e-26 117
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 58 1e-26 117
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 58 1e-26 117
WERAM-Prp-0077 EMJ03579 Prunus persica 60 2e-26 117
WERAM-Sei-0085 Si022778m Setaria italica 59 2e-26 117
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 58 2e-26 117
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 66 4e-26 115
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 56 6e-26 115
WERAM-Aet-0097 EMT09079 Aegilops tauschii 59 1e-25 114
WERAM-Met-0051 KEH38943 Medicago truncatula 53 2e-24 110
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 57 5e-23 105
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 60 5e-23 105
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 52 6e-23 105
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 57 8e-23 105
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 57 1e-22 103
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 57 2e-22 103
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 59 2e-19 93.6
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 51 2e-18 90.1
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 51 2e-18 90.1
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 39 1e-15 81.3
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 37 4e-13 72.8
WERAM-Amt-0052 ERN12770 Amborella trichopoda 67 2e-12 70.1
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 43 9e-11 65.1
Created Date 25-Jun-2016