WERAM Information

Tag Content
WERAM ID WERAM-Sob-0059
Ensembl Protein ID Sb03g043350.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb03g043350 Sb03g043350.1 Sb03g043350.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 2.00e-23 106
HDAC HD2 2.00e-21 100
Organism Sorghum bicolor
Domain Profile
  HDAC HD2
Query: 1  MEFWGKEVKPGATVSCEVGNDLVIHLSQAALGEPK-KASENVIVSVKIDDKKLVLGTLSV 59
          MEFWG EVK G  V+      ++IH+SQA+LGE K K  E V + VK+ ++ LVLGTLS 
Sbjct: 1  MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60
Query: 60 EKHPQISCDLVFDKDFELSHNSKTASVFFCGYKSP 94
          E  PQ+ CDLVFDK+FELSH     SV+F GYK+P
Sbjct: 61 ENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTP 95
Query: 181 PTPKKTDVVVGKKRAIQA--EAP-SGKKAKSEQSAQKTGDKKVSTHSAKQXXXXXXXXXX 237
           PTPKK      KKRA +   +AP S KKAK   + QKT +KK    +A Q          
Sbjct: 163 PTPKKP--ASSKKRANETTPKAPVSAKKAKVAVTPQKTDEKKKGGKAANQSPKSASQV-- 218
Query: 238 XXXXXXXXXXXGSHACKSCNKSFSSATGLESHQKAK 273
                         +C SC K+F+S   LESH KAK
Sbjct: 219 --------------SCGSCKKTFNSGNALESHNKAK 240
  HDAC HD2
Query: 1  MEFWGKEVKPGATVSCEVGNDLVIHLSQAALGEPKKASENVIVSVKIDDKKLVLGTLSVE 60
          MEFWG  V P          D ++H+SQA+L    K+ E+V++SV +   KLV+GTLS +
Sbjct: 1  MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60
Query: 61 KHPQISCDLVFDKDFELSHNSKTASVFFCGYKSP 94
          K PQIS DLVFDK+FELSH+   A+V F GYKSP
Sbjct: 61 KFPQISFDLVFDKEFELSHSGTKANVHFIGYKSP 94
Protein Sequence
(Fasta)		MEFWGKEVKP GATVSCEVGN DLVIHLSQAA LGEPKKASEN VIVSVKIDDK KLVLGTLSVE 60
KHPQISCDLV FDKDFELSHN SKTASVFFCG YKSPVPQFES YSGEDSSDEE LETDHQIPRN 120
EISAAKVPVK GGIKVESSSS DDDDDDFTDS EMSDEDDSSD EDDVSTGDDS SDDSGSEEQT 180
PTPKKTDVVV GKKRAIQAEA PSGKKAKSEQ SAQKTGDKKV STHSAKQSSK TPDKSTKTPT 240
ADKKSPKSGS HACKSCNKSF SSATGLESHQ KAKKHEA 277
Nucleotide Sequence
(Fasta)		CAATTCGACC CCGCCGCTAA ACCCTAAACC CCGCTCCGGC GCCTCCCGCT CCGGCTCCTA 60
CTCCCAGTCG GCTAGGGTTC TGCGCGGCCG CTTCCTCGTC GGCGCAATGG AGTTCTGGGG 120
TAAAGAAGTA AAGCCAGGAG CCACGGTTTC TTGCGAAGTT GGTAATGATT TGGTTATCCA 180
CCTTTCACAG GCTGCACTGG GGGAACCAAA GAAAGCGAGT GAGAATGTCA TTGTGTCTGT 240
CAAAATCGAC GATAAGAAAT TAGTGCTTGG AACCTTATCG GTTGAGAAGC ATCCTCAGAT 300
TTCATGTGAT CTTGTCTTTG ATAAAGATTT TGAGCTATCC CACAATTCAA AAACAGCTAG 360
TGTTTTCTTC TGTGGCTACA AGTCTCCTGT TCCTCAGTTT GAGTCTTATT CTGGTGAAGA 420
CAGTTCGGAT GAAGAGCTAG AAACTGACCA CCAAATTCCA AGAAATGAAA TTTCTGCGGC 480
AAAGGTTCCA GTGAAGGGTG GTATAAAAGT TGAATCATCT TCCAGTGATG ATGATGATGA 540
TGATTTCACT GATAGTGAAA TGTCTGATGA AGATGACTCC AGTGATGAAG ATGATGTGTC 600
AACTGGTGAT GATTCTAGTG ATGATTCTGG TTCGGAAGAA CAGACTCCTA CCCCAAAGAA 660
GACTGATGTA GTAGTTGGCA AGAAGAGAGC CATTCAAGCT GAGGCACCTT CTGGTAAGAA 720
GGCAAAGTCT GAACAATCTG CTCAGAAAAC AGGTGACAAG AAGGTCTCAA CTCATTCTGC 780
AAAGCAGTCT AGCAAGACTC CAGACAAATC TACAAAGACC CCCACAGCTG ACAAGAAGTC 840
CCCCAAATCT GGTAGCCATG CCTGCAAGTC ATGCAACAAA TCTTTCAGCA GTGCGACAGG 900
ACTTGAGTCT CATCAGAAGG CGAAGAAGCA TGAAGCCTAG AGCATGTGCT GTACCTATAG 960
GTTGATCAAC TTGAGTTATC AAAATTAGCG GTCTTATTTT TGAACTTGAA AATGCCAAGT 1020
TTGGAACTTG CCCAGTAGTC ATCCGATTAG TGGTCTTATT ATTTTTGAAC TTGGGAAATG 1080
TCAAGTTTGG AACATACCCA ATATGTGTTG AGAACATGGG AAACGTCAAG GTTAGAGCAG 1140
GCTCTGTTAG CCCAATTTTG GTCGTCGTTG AATGATGCTA ATCTTTT 1188
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 70 1e-76 283
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 68 2e-33 140
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 68 2e-33 140
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 70 4e-33 139
WERAM-Sei-0085 Si022778m Setaria italica 67 6e-33 138
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 65 8e-31 131
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 67 2e-30 129
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 64 2e-29 126
WERAM-Mua-0006 GSMUA_Achr10P04780_001 Musa acuminata 61 3e-29 125
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 67 1e-28 124
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 67 1e-28 124
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 61 2e-28 123
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 66 2e-28 123
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 66 8e-28 121
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 66 8e-28 121
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 59 1e-27 120
WERAM-Thc-0115 EOY33573 Theobroma cacao 58 6e-27 118
WERAM-Prp-0078 EMJ06874 Prunus persica 60 2e-26 117
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 59 5e-26 115
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 61 7e-26 115
WERAM-Aet-0097 EMT09079 Aegilops tauschii 60 3e-25 112
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 54 2e-24 109
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 58 5e-24 108
WERAM-Met-0051 KEH38943 Medicago truncatula 57 7e-24 108
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 57 1e-23 107
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 56 2e-23 107
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 56 3e-23 106
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 47 6e-22 102
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 56 4e-21 99.4
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 55 5e-21 98.6
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 62 4e-20 95.5
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 42 8e-17 84.7
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 38 2e-12 70.1
WERAM-Amt-0052 ERN12770 Amborella trichopoda 65 2e-11 67.0
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 52 4e-11 65.9
Created Date 25-Jun-2016