WERAM Information

Tag Content
WERAM ID WERAM-Pot-0048
Ensembl Protein ID POPTR_0004s20020.1
Gene Name POPTR_0004s20020g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0004s20020 POPTR_0004s20020.1 POPTR_0004s20020.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 5.00e-27 118
Organism Populus trichocarpa
Domain Profile
  HDAC HD2
Query: 4   MEFWGVEVKAGEPLKVEPKDFYMIHLSQAALGESSKKGNESVPLFLKLDEKKLVLGTLSP 63
           MEFWGVEVK G+PL ++P    ++H+SQ ALGES     E + L++ +   KL++GTLS 
Sbjct: 1   MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTVGSDKLLIGTLSH 60
Query: 64  DKIPQLSFDLVFEREFELSHNWKNGSVFFCGYQ--AAIPENDSDFSDD 109
           +K PQLS ++V ER F LSH WKNGSVFF GY+  A+ PE + D  DD
Sbjct: 61  EKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASDPEPE-DLIDD 107
Query: 204 KTPVSSKKAKTATPQKTDGGK--AGQVTPHPAK--------GKAASNGNNPKTPKSGGNF 253
           K P S+KKAK  TPQKTD  K      TPHP+K        G         +TPKS G F
Sbjct: 208 KNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAF 267
Query: 254 SCKSCERSFGSDGALKSHSQAKH 276
            CKSC R+F S+  L+SH++AKH
Sbjct: 268 GCKSCTRTFTSEMGLQSHTKAKH 290
Protein Sequence
(Fasta)		MSSMEFWGVE VKAGEPLKVE PKDFYMIHLS QAALGESSKK GNESVPLFLK LDEKKLVLGT 60
LSPDKIPQLS FDLVFEREFE LSHNWKNGSV FFCGYQAAIP ENDSDFSDDG DEIPFEKVEN 120
VKFATGTDKA AKPEKPKANP VVPSKDDESD DDDSDDDSDE DDSGDGSEGM SLEEDLDDES 180
DSEDEETPKK AEQSKKRTSD SAIKTPVSSK KAKTATPQKT DGGKAGQVTP HPAKGKAASN 240
GNNPKTPKSG GNFSCKSCER SFGSDGALKS HSQAKHGDK 279
Nucleotide Sequence
(Fasta)		AAACCTAACA GAGGCAGCTG AAACGCACTT TTGTTTTTCC CCCACTTTTC TCTTGAAAAA 60
CCCTAATTCC TTCCTCGCGG CAAGCTGCAT ATAAAAACCC TTTAAACCCT TCCTCGTCTC 120
CGCCTCTTTC ATTCTCATAG CTCCCACCCA GAGCCTCTCT CAATTTCAAA GCCCAAAACC 180
CTTGAAACCC TCTACTCTCA TTAAACATGT CGTCCATGGA GTTCTGGGGT GTTGAAGTCA 240
AGGCTGGTGA GCCTCTTAAA GTGGAACCTA AAGATTTCTA TATGATACAT CTTTCTCAGG 300
CAGCCCTTGG TGAGTCTTCA AAGAAGGGAA ACGAATCAGT TCCCCTTTTC CTAAAGCTCG 360
ATGAAAAGAA GCTTGTGTTG GGAACCCTAT CTCCTGATAA GATCCCTCAA TTGTCCTTTG 420
ATTTAGTTTT TGAGAGAGAG TTCGAGCTCT CTCACAACTG GAAAAATGGG AGTGTTTTCT 480
TCTGTGGCTA CCAAGCTGCT ATTCCTGAAA ATGATTCTGA TTTTTCTGAT GATGGAGATG 540
AAATCCCATT TGAGAAAGTG GAGAATGTGA AGTTTGCTAC TGGTACAGAT AAAGCTGCCA 600
AGCCTGAAAA ACCAAAGGCT AATCCTGTAG TGCCAAGCAA AGATGATGAA TCTGACGATG 660
ACGATTCTGA TGACGATTCT GATGAGGATG ATTCAGGCGA TGGATCCGAG GGTATGTCTC 720
TTGAAGAAGA TTTGGATGAT GAATCTGATA GTGAAGATGA AGAGACTCCT AAGAAGGCTG 780
AGCAAAGCAA GAAGAGGACC AGTGACTCTG CAATAAAGAC ACCAGTGTCC TCAAAGAAGG 840
CTAAAACTGC TACCCCTCAG AAGACAGATG GTGGGAAGGC TGGGCAAGTA ACTCCCCACC 900
CTGCAAAGGG AAAAGCTGCG TCAAATGGCA ACAACCCCAA GACCCCAAAG TCCGGTGGCA 960
ATTTCTCCTG CAAATCCTGC GAAAGGTCAT TTGGCTCTGA TGGTGCTCTG AAGTCGCACT 1020
CACAAGCCAA GCATGGTGAC AAGTGAATTA CCTATGACTA TGTCATAGGG TTTTGGTATT 1080
CATCTCTGGA GTATATGAGA GGTTTATGTT AGCAACTCGT CTGTAATTTT GTTAGAGATC 1140
TACATTTGAA GAAAATATGT CGGATGCATT CCATTTTGAG TTTATTGGAA CCGTTGCGAT 1200
GTTTGACCAT TACATGGTTC TGTTCAGATC ATGGTTCTGT TCAGATTACT ATTCCGATGT 1260
TATTATGTTT GCTCTAAAAA TCATCTTAGA AATTTAAGC
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 70 3e-35 145
WERAM-Prp-0078 EMJ06874 Prunus persica 58 2e-34 143
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 66 1e-33 140
WERAM-Thc-0115 EOY33573 Theobroma cacao 63 2e-33 140
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 66 8e-33 137
WERAM-Met-0051 KEH38943 Medicago truncatula 59 3e-31 132
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 59 4e-31 132
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 59 1e-30 130
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 58 1e-30 130
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 58 1e-30 130
WERAM-Bro-0186 Bo9g181760.1 Brassica oleracea 58 3e-30 129
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 63 2e-29 127
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 40 2e-29 126
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 60 6e-29 125
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 54 2e-28 123
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 58 2e-28 123
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 59 9e-28 121
WERAM-Sei-0085 Si022778m Setaria italica 58 1e-27 120
WERAM-Aet-0097 EMT09079 Aegilops tauschii 57 3e-26 116
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 53 3e-26 115
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 57 4e-26 115
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 59 1e-25 114
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 53 3e-25 112
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 59 4e-25 112
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 59 4e-25 112
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 50 2e-23 106
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 53 2e-22 103
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 46 5e-22 102
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 45 4e-21 99.0
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 47 1e-19 94.4
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 47 1e-19 94.4
WERAM-Amt-0052 ERN12770 Amborella trichopoda 66 1e-18 90.9
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 43 5e-15 79.0
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 33 5e-11 65.5
WERAM-Orm-0015 OMERI01G38270.1 Oryza meridionalis 33 4e-08 55.8
Created Date 25-Jun-2016