WERAM Information

Tag Content
WERAM ID WERAM-Orb-0056
Ensembl Protein ID OBART05G28290.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
OBART05G28290 OBART05G28290.1 OBART05G28290.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 1.00e-22 103
Organism Oryza barthii
Domain Profile
  HDAC HD2
Query: 1  MEFWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSAD 60
          MEFWG+ V P    K  PE++  +H+SQA+L  + K  ++ V+ V     KLVIGTLS D
Sbjct: 1  MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60
Query: 61 KFPQIQFDLVFDKEFELSHTSKTAN 85
          KFPQI FDLVFDKEFELSH+   AN
Sbjct: 61 KFPQISFDLVFDKEFELSHSGTKAN 85
Query: 145 TPKKPE-TGKRKVAEIVLKTPSSDKKAKI-----ATPSGQKTGDKK-GVHVATPHPAKQA 197
           TPKKPE   K++  E V KTP S KKAK      +TP  QKT +KK G H ATPHPAK+ 
Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTP--QKTEEKKKGGHTATPHPAKKG 256
Query: 198 SKTPVN 203
            K+PVN
Sbjct: 257 GKSPVN 262
Protein Sequence
(Fasta)		MEFWGLEVKP GQTVKCEPED ERFLHLSQAA LGESKKGSDN AVMYVKTDDQ KLVIGTLSAD 60
KFPQIQFDLV FDKEFELSHT SKTANEEEEE KIIPAPRANG KVEGKENEQK KQGKTDSSAS 120
KSKAAVNDDD DDDDNDEDES DEEETPKKPE TGKRKVAEIV LKTPSSDKKA KIATPSGQKT 180
GDKKGVHVAT PHPAKQASKT PVNDKSKEKS PKSGGGSISC KSCSKTFNSE MALQSHSKAK 240
HPAK 244
Nucleotide Sequence
(Fasta)		ATGGAGTTCT GGGGTCTTGA AGTCAAGCCT GGACAGACTG TCAAATGTGA GCCTGAAGAT 60
GAACGCTTTT TGCACCTTTC TCAGGCTGCT CTTGGGGAAT CAAAGAAAGG ATCTGACAAT 120
GCAGTAATGT ATGTTAAAAC TGATGATCAA AAGCTAGTCA TTGGAACCCT CTCAGCTGAC 180
AAGTTCCCTC AAATCCAGTT TGATTTGGTC TTTGACAAAG AGTTTGAGCT GTCACACACT 240
TCAAAGACTG CTAATGAAGA GGAGGAAGAA AAGATCATTC CAGCTCCCAG GGCAAATGGC 300
AAAGTTGAAG GGAAGGAAAA TGAGCAGAAA AAACAAGGCA AGACAGATTC TTCAGCTTCA 360
AAATCAAAGG CTGCAGTGAA TGACGACGAT GATGATGATG ACAATGATGA GGATGAGAGT 420
GACGAGGAAG AAACTCCCAA GAAGCCAGAG ACTGGAAAGA GGAAAGTAGC TGAAATTGTG 480
TTGAAGACAC CTTCGTCTGA TAAGAAAGCA AAGATTGCTA CACCGTCAGG CCAGAAGACA 540
GGTGACAAGA AGGGTGTCCA TGTAGCAACT CCACATCCGG CAAAGCAGGC TAGCAAGACC 600
CCCGTGAATG ACAAGTCAAA GGAGAAGTCC CCAAAATCCG GTGGTGGGTC AATTTCTTGC 660
AAGTCATGCA GCAAGACGTT CAACAGTGAA ATGGCTCTGC AGTCTCACTC AAAGGCCAAG 720
CACCCCGCCA AGTGA 736
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 99 4e-54 208
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 77 3e-47 185
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 77 3e-47 185
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 74 5e-45 178
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 88 3e-44 175
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 96 2e-43 172
WERAM-Sei-0085 Si022778m Setaria italica 84 1e-36 150
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 84 5e-36 148
WERAM-Zem-0062 GRMZM2G100146_P01 Zea mays 81 4e-34 142
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 67 2e-33 139
WERAM-Aet-0097 EMT09079 Aegilops tauschii 75 4e-32 135
WERAM-Mua-0006 GSMUA_Achr10P04780_001 Musa acuminata 65 6e-30 128
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 78 7e-30 127
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 71 1e-29 126
WERAM-Prp-0078 EMJ06874 Prunus persica 62 2e-26 116
WERAM-Pot-0109 POPTR_0009s15160.1 Populus trichocarpa 62 3e-25 112
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 60 1e-24 110
WERAM-Thc-0115 EOY33573 Theobroma cacao 55 9e-24 107
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 60 2e-23 106
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 59 2e-23 106
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 60 2e-23 106
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 55 9e-23 104
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 55 2e-22 103
WERAM-Art-0126 AT5G22650.1 Arabidopsis thaliana 55 2e-22 103
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 57 2e-22 103
WERAM-Met-0051 KEH38943 Medicago truncatula 56 4e-22 102
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 57 3e-21 99.4
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 57 3e-21 99.4
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 52 7e-21 98.2
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 54 3e-20 96.3
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 49 8e-20 94.7
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 42 4e-16 82.0
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 39 1e-10 64.3
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 42 7e-10 61.2
WERAM-Amt-0052 ERN12770 Amborella trichopoda 63 4e-07 52.4
Created Date 25-Jun-2016