WERAM Information

Tag Content
WERAM ID WERAM-Amt-0052
Ensembl Protein ID ERN12770
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AMTR_s00043p00194480 ERN12770 ERN12770
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 4.00e-11 64
HDAC HD2 8.00e-11 64
Organism Amborella trichopoda
Domain Profile
  HDAC HD2
Query: 3  IVIGSLSSEKLPQLSFDLVFQKEFELSHNWKNGSIFLCGYKT 44
          +V+G+LS+E +PQL  DLVF KEFELSH W  GS++  GYKT
Sbjct: 53 LVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKT 94
  HDAC HD2
Query: 2  KIVIGSLSSEKLPQLSFDLVFQKEFELSHNWKNGSIFLCGYK 43
          K++IG+LS EK PQLS ++V ++ F LSH WKNGS+F  GYK
Sbjct: 52 KLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYK 93
Protein Sequence
(Fasta)		MKIVIGSLSS EKLPQLSFDL VFQKEFELSH NWKNGSIFLC GYKTIIQEGE SSDFSDSEED 60
DIPTLIKEES GREANNVPKP KVEDDDHDGD DEDDESEDHD EDDIDHEDED MLEASDDESD 120
DKDDEDKSSD EEQLVTPKNV DAGKKRALDS AAKTPGLEKK AKVVTPAGGA KPEAKW 176
Nucleotide Sequence
(Fasta)		ATGAAGATAG TGATTGGTTC ACTCTCATCA GAAAAACTAC CCCAACTTTC ATTTGATCTA 60
GTCTTTCAGA AAGAATTTGA ACTATCCCAC AACTGGAAAA ATGGGAGCAT CTTTTTATGT 120
GGCTACAAGA CAATCATCCA AGAAGGAGAA TCATCAGATT TCTCAGATTC AGAGGAAGAC 180
GATATTCCAA CTTTGATCAA AGAGGAAAGT GGTAGGGAAG CAAACAATGT GCCCAAACCG 240
AAAGTGGAGG ATGACGATCA TGATGGAGAC GACGAGGATG ATGAATCTGA AGATCATGAT 300
GAAGATGACA TCGACCATGA GGATGAGGAT ATGCTTGAAG CTAGTGATGA TGAAAGTGAT 360
GATAAAGATG ATGAGGATAA AAGTTCAGAT GAAGAGCAAC TTGTCACTCC CAAGAACGTT 420
GATGCGGGCA AGAAAAGGGC TTTGGATTCT GCTGCAAAAA CTCCAGGGCT TGAAAAGAAG 480
GCCAAGGTGG TTACACCTGC TGGTGGAGCA AAGCCAGAAG CAAAGTGGTA A 532
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 71 2e-16 82.4
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 72 5e-16 80.9
WERAM-Thc-0115 EOY33573 Theobroma cacao 65 4e-15 78.2
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 71 5e-14 74.7
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 64 6e-14 73.9
WERAM-Prp-0078 EMJ06874 Prunus persica 67 1e-13 73.2
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 67 5e-13 71.2
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 63 2e-12 69.3
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 62 3e-12 68.6
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 62 4e-12 68.2
WERAM-Aet-0097 EMT09079 Aegilops tauschii 63 9e-12 67.0
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 63 1e-11 66.6
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 64 1e-11 66.2
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 63 2e-11 66.2
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 63 2e-11 65.9
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 63 2e-11 65.9
WERAM-Arl-0013 Al_scaffold_0006_2135 Arabidopsis lyrata 57 2e-11 65.5
WERAM-Met-0051 KEH38943 Medicago truncatula 42 3e-11 65.1
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 62 5e-11 64.3
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 62 9e-11 63.5
WERAM-Bro-0186 Bo9g181760.1 Brassica oleracea 53 3e-10 61.6
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 58 4e-10 61.6
WERAM-Sei-0085 Si022778m Setaria italica 60 5e-10 60.8
WERAM-Brr-0050 Bra009513.1-P Brassica rapa 52 1e-09 60.1
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 57 4e-08 55.1
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 47 4e-08 54.7
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 64 1e-07 53.5
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 61 2e-07 52.8
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 61 2e-07 52.8
Created Date 25-Jun-2016