WERAM Information

Tag Content
WERAM ID WERAM-Brr-0167
Ensembl Protein ID Bra034373.1-P
Gene Name HDT4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra034373 Bra034373.1 Bra034373.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 3.00e-30 128
Organism Brassica rapa
Domain Profile
  HDAC HD2
Query: 1   MEFWGIEIKPGKPTKVEQEDGYMIHVSQIAIGEFNKVG-DKTVQVFVKVGGDDKQKLLIG 59
           MEFWGIEIKPGKP KV Q+DG+M+H SQ+ +G+  KV  D+T  V+VK+G DD+   +IG
Sbjct: 1   MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIG-DDENGFMIG 59
Query: 60  NLSQKVPQVLLDLLFEQDFEVSHECKSTSVYLLGYKTVDPLDGEVNSDFDSEDEDIPMDM 119
           NLSQK PQ  +DL    +FE+SH   ++SVYL+GY+T D  D E++ + DS+ E   +D 
Sbjct: 60  NLSQKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRTFDAFD-ELDEEIDSDSE---LDE 114
Query: 120 F-QRELEKSKANGLNGQKANLXXXXXXXXXXXXXXXXXXXXXXXXTPVKVAPPSKKRPNG 178
           + ++++     N +N  + +                          P+KVAPPSKK PNG
Sbjct: 115 YMEQQIAALPQNEIN-PEEDDESDSDEMGLDEDDDSSDEEDVEAEAPLKVAPPSKKMPNG 173
Query: 179 G 179
            
Sbjct: 174 A 174
Protein Sequence
(Fasta)		MEFWGIEIKP GKPTKVEQED GYMIHVSQIA IGEFNKVGDK TVQVFVKVGG DDKQKLLIGN 60
LSQKVPQVLL DLLFEQDFEV SHECKSTSVY LLGYKTVDPL DGEVNSDFDS EDEDIPMDMF 120
QRELEKSKAN GLNGQKANLE DDETDSDEMG SDEDEDDSEE EEDTPVKVAP PSKKRPNGGA 180
MNNNNTVASK KAKVANQQGG HKGHKCGGVH PPKRN 215
Nucleotide Sequence
(Fasta)		ATGGAGTTTT GGGGTATTGA GATTAAGCCT GGAAAGCCCA CCAAGGTGGA ACAAGAAGAT 60
GGTTACATGA TCCATGTCTC TCAGATTGCA ATTGGTGAGT TCAACAAGGT TGGAGATAAG 120
ACTGTTCAGG TCTTTGTGAA GGTTGGTGGT GATGATAAGC AAAAGCTTCT CATCGGAAAC 180
CTCTCTCAGA AGGTTCCTCA AGTTTTGCTT GATCTCTTGT TTGAGCAAGA TTTTGAGGTC 240
TCGCATGAGT GCAAAAGCAC CAGTGTCTAT CTTCTTGGTT ACAAGACCGT TGATCCTTTG 300
GATGGTGAGG TCAACTCTGA TTTTGATTCA GAGGATGAGG ATATTCCCAT GGATATGTTT 360
CAACGTGAAT TGGAGAAATC AAAGGCTAAT GGGTTGAATG GTCAAAAGGC CAACCTTGAA 420
GATGATGAAA CTGACTCTGA TGAGATGGGT TCGGATGAGG ATGAGGATGA CTCAGAAGAA 480
GAAGAGGATA CACCTGTAAA GGTTGCGCCT CCGAGCAAGA AGAGACCAAA TGGTGGAGCA 540
ATGAACAACA ACAACACAGT TGCATCAAAG AAAGCCAAAG TTGCAAATCA GCAAGGAGGG 600
CATAAGGGGC ACAAGTGTGG CGGTGTTCAT CCTCCAAAAA GAAACTAG 649
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0080 Bo4g164870.1 Brassica oleracea 94 5e-82 300
WERAM-Art-0046 AT2G27840.1 Arabidopsis thaliana 45 4e-30 128
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 47 2e-26 116
WERAM-Arl-0035 fgenesh1_pm.C_scaffold_4000660 Arabidopsis lyrata 58 3e-26 115
WERAM-Prp-0078 EMJ06874 Prunus persica 48 6e-26 114
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 46 1e-24 109
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 48 2e-23 105
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 50 2e-22 102
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 49 2e-22 102
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 49 2e-22 102
WERAM-Met-0051 KEH38943 Medicago truncatula 44 1e-21 100
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 45 2e-21 99.8
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 48 2e-21 99.8
WERAM-Sot-0008 PGSC0003DMT400006927 Solanum tuberosum 50 4e-21 98.6
WERAM-Sei-0085 Si022778m Setaria italica 48 6e-21 98.2
WERAM-Sol-0107 Solyc09g009030.2.1 Solanum lycopersicum 49 1e-20 97.1
WERAM-Thc-0115 EOY33573 Theobroma cacao 47 2e-20 96.3
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 52 5e-20 94.7
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 52 6e-20 94.7
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 49 6e-20 94.7
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 44 7e-20 94.4
WERAM-Aet-0097 EMT09079 Aegilops tauschii 49 8e-20 94.4
WERAM-Orb-0013 OBART01G41240.1 Oryza barthii 52 1e-19 93.2
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 53 2e-18 89.7
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 44 1e-17 87.4
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 50 2e-17 86.3
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 49 3e-17 85.5
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 44 1e-15 80.5
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 43 3e-15 79.0
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 35 5e-15 78.2
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 47 7e-15 77.8
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 31 5e-10 61.6
WERAM-Amt-0052 ERN12770 Amborella trichopoda 52 6e-10 61.2
WERAM-Orm-0015 OMERI01G38270.1 Oryza meridionalis 28 5e-06 48.5
Created Date 25-Jun-2016