WERAM Information

Tag Content
WERAM ID WERAM-Brr-0103
Ensembl Protein ID Bra020209.1-P
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra020209 Bra020209.1 Bra020209.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 8.00e-31 130
Organism Brassica rapa
Domain Profile
  HDAC HD2
Query: 1  MEFWGVEVKAGKPLKVKPDEDCLIHLSQASLDKG-KKGEAALLYVTVDGKKLVIGTLVQD 59
          MEFWGV V      KV P+ED L+H+SQASLD   K GE+ +L VTV G KLVIGTL QD
Sbjct: 1  MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60
Query: 60 TIPQISFDLVFEKEFELSHS-SKGSVHFIGYKSPNI 94
            PQISFDLVF+KEFELSHS +K +VHFIGYKSPNI
Sbjct: 61 KFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNI 96
Query: 199 TPKKPEPINKKRPIESXXXX------XXXXXXXXXXXXXXEEKKKGGHTATPHPAKKGGK 252
           TPKKPEPINKKRP ES                        EEKKKGGHTATPHPAKKGGK
Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGK 258
Query: 253 SPMNA 257
           SP+NA
Sbjct: 259 SPVNA 263
Protein Sequence
(Fasta)		MEFWGVEVKA GKPLKVKPDE DCLIHLSQAS LDKGKKGEAA LLYVTVDGKK LVIGTLVQDT 60
IPQISFDLVF EKEFELSHSS KGSVHFIGYK SPNIDEEEDF PSDSEEEEEE VEVPATSTVT 120
TTNGAAPASS VVTVDSKPKA KAAAAAKPAE VKPESDEDDD ESDEEDDSED DGSDSEKGMD 180
VDEDDSEDEE DDSEEEEDTP KKPEPINKKR PIESATPVSA KKAKPAATPQ KTEEKKKGGH 240
TATPHPAKKG GKSPMNANQS PKSGGQSSGS GGNKKPFNNS GKQFGSNNKG NKGKGGKGRA 300
Nucleotide Sequence
(Fasta)		ATGGAATTCT GGGGAGTTGA GGTTAAGGCA GGGAAGCCAC TTAAAGTGAA ACCTGATGAA 60
GACTGTCTCA TCCACCTTTC ACAGGCATCT CTTGATAAAG GGAAGAAGGG TGAAGCTGCT 120
CTCTTGTACG TGACCGTTGA TGGGAAGAAG CTTGTGATTG GAACCCTTGT TCAAGACACC 180
ATCCCCCAGA TCAGCTTTGA TCTGGTCTTT GAGAAGGAGT TTGAGCTCTC CCACTCCTCC 240
AAAGGAAGCG TCCACTTCAT CGGCTACAAG TCTCCCAACA TCGACGAAGA GGAGGATTTC 300
CCTTCTGATT CAGAGGAAGA AGAGGAGGAA GTTGAGGTTC CTGCTACTTC AACTGTCACT 360
ACAACCAACG GAGCAGCACC TGCTTCCAGT GTTGTTACTG TTGACTCAAA GCCAAAGGCT 420
AAGGCGGCGG CTGCTGCTAA GCCTGCTGAA GTGAAGCCTG AATCGGATGA GGATGATGAT 480
GAGTCTGACG AGGAGGATGA CTCTGAAGAT GATGGTTCTG ACTCTGAGAA AGGAATGGAT 540
GTTGATGAGG ATGATTCTGA GGACGAGGAG GATGATTCTG AGGAGGAAGA GGATACCCCT 600
AAGAAGCCTG AGCCCATCAA CAAGAAGAGG CCCATTGAAT CTGCAACACC TGTCTCTGCT 660
AAGAAGGCTA AACCTGCAGC CACCCCTCAG AAAACAGAGG AGAAGAAGAA GGGAGGGCAC 720
ACAGCAACAC CACACCCAGC TAAAAAGGGT GGAAAGAGTC CTATGAATGC TAACCAGAGC 780
CCCAAATCTG GAGGTCAATC ATCTGGATCT GGTGGTAACA AGAAGCCATT CAACAACTCT 840
GGCAAGCAAT TTGGTTCTAA CAACAAGGGC AACAAGGGAA AAGGAGGAAA GGGCAGAGCC 900
TAA 904
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 82 1e-51 200
WERAM-Arl-0013 Al_scaffold_0006_2135 Arabidopsis lyrata 68 1e-31 134
WERAM-Art-0126 AT5G22650.1 Arabidopsis thaliana 69 1e-30 130
WERAM-Pot-0109 POPTR_0009s15160.1 Populus trichocarpa 67 1e-28 124
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 62 2e-27 120
WERAM-Thc-0115 EOY33573 Theobroma cacao 61 4e-27 119
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 60 4e-27 119
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 59 5e-27 119
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 62 3e-26 116
WERAM-Sei-0085 Si022778m Setaria italica 62 9e-26 114
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 60 2e-25 113
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 60 2e-25 113
WERAM-Zem-0062 GRMZM2G100146_P01 Zea mays 60 8e-25 111
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 59 1e-24 110
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 58 4e-24 109
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 60 6e-24 108
WERAM-Prp-0078 EMJ06874 Prunus persica 58 1e-23 107
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 58 1e-23 107
WERAM-Aet-0097 EMT09079 Aegilops tauschii 57 2e-23 107
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 59 2e-23 107
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 60 2e-23 106
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 60 2e-23 106
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 59 2e-23 106
WERAM-Met-0051 KEH38943 Medicago truncatula 55 3e-22 103
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 57 3e-22 102
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 57 1e-20 97.8
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 46 4e-17 86.3
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 46 4e-17 86.3
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 44 5e-17 85.9
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 47 1e-15 80.9
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 42 3e-15 80.1
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 38 1e-12 71.2
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 37 3e-09 59.7
WERAM-Amt-0052 ERN12770 Amborella trichopoda 60 1e-08 57.8
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 39 7e-07 52.0
Created Date 25-Jun-2016