WERAM Information

Tag Content
WERAM ID WERAM-Bro-0028
Ensembl Protein ID Bo2g024240.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bo2g024240 Bo2g024240.1 Bo2g024240.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 7.00e-45 177
Organism Brassica oleracea
Domain Profile
  HDAC HD2
Query: 1   MEFWGVEVRAGKPLKVKPDEDCLIHLSQASLDKG-KKGETAVLYVTVDGKKLVIGTLVQD 59
           MEFWGV V      KV P+ED L+H+SQASLD   K GE+ VL VTV G KLVIGTL QD
Sbjct: 1   MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60
Query: 60  TIPQISFDLVFEKEFELSHS-SKGSVHFIGYKSPNIXXXXXXXXXXXXXXXXXXVPATST 118
             PQISFDLVF+KEFELSHS +K +VHFIGYKSPNI                   PA + 
Sbjct: 61  KFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDFTSSDDEDVPEAVPAPAPTA 120
Query: 119 VTTNGATPTSSVVTVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMDV 178
           VT NG    ++VV  D+                                      KGMDV
Sbjct: 121 VTANGNA-GAAVVKADT-KPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDV 178
Query: 179 --XXXXXXXXXXXXXXXXXXTPKKPETSNKKRPIESXXXX----XXXXXXXXXXXXXQKS 232
                               TPKKPE  NKKRP ES                     QK+
Sbjct: 179 DEDDSDDDEEEDSEDEEEEETPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKT 238
Query: 233 EEKKKGGHTATPHPAKKGGKSPMNA 257
           EEKKKGGHTATPHPAKKGGKSP+NA
Sbjct: 239 EEKKKGGHTATPHPAKKGGKSPVNA 263
Protein Sequence
(Fasta)		MEFWGVEVRA GKPLKVKPDE DCLIHLSQAS LDKGKKGETA VLYVTVDGKK LVIGTLVQDT 60
IPQISFDLVF EKEFELSHSS KGSVHFIGYK SPNIDEEEDF PCDSEEEEEE VEVPATSTVT 120
TNGATPTSSV VTVDSKPKAA AKAKPAVVKP ESDEDDDESD EEDDSEDDGS DSEKGMDVDE 180
DDSEDEEDDS EEEEEDTPKK PETSNKKRPI ESATPVPAKK AKPAVAATPQ KSEEKKKGGH 240
TATPHPAKKG GKSPMNANQS PKSGGQSSGS GGNKKPFNNS GKQFGSNNKG NKGKGKGSRA 300
Nucleotide Sequence
(Fasta)		ATGGAATTCT GGGGAGTTGA GGTTAGGGCA GGGAAGCCAC TTAAAGTGAA ACCTGATGAA 60
GACTGTCTCA TCCACCTTTC ACAGGCATCT CTTGATAAAG GGAAGAAGGG TGAAACCGCC 120
GTCTTGTACG TGACCGTTGA CGGGAAGAAG CTTGTGATTG GAACACTTGT TCAAGACACC 180
ATCCCCCAGA TCAGCTTTGA TCTGGTCTTT GAGAAGGAGT TTGAGCTCTC ACACTCGTCC 240
AAAGGAAGCG TCCACTTCAT CGGCTACAAG TCTCCCAACA TCGACGAAGA GGAGGATTTC 300
CCTTGTGACT CGGAAGAGGA AGAGGAGGAA GTTGAGGTTC CTGCTACTTC AACTGTCACT 360
ACAAACGGAG CAACACCTAC TTCGAGTGTT GTTACTGTTG ACTCAAAGCC AAAGGCTGCG 420
GCTAAGGCTA AGCCTGCTGT AGTGAAGCCT GAATCAGACG AGGATGATGA TGAGTCTGAC 480
GAGGAGGATG ATTCTGAAGA TGATGGATCT GACTCTGAGA AAGGGATGGA TGTTGATGAG 540
GATGATTCTG AGGATGAGGA AGATGATTCT GAGGAGGAGG AAGAGGATAC CCCTAAGAAG 600
CCTGAGACAA GCAACAAGAA GAGGCCGATT GAATCTGCAA CACCTGTCCC TGCTAAGAAG 660
GCTAAACCCG CAGTAGCAGC TACCCCTCAG AAATCAGAGG AGAAGAAGAA GGGAGGGCAC 720
ACAGCTACAC CACACCCAGC TAAAAAGGGA GGAAAGAGTC CTATGAATGC TAACCAGAGC 780
CCCAAATCTG GAGGTCAATC ATCCGGATCT GGTGGTAACA AGAAGCCATT CAACAACTCC 840
GGCAAGCAAT TTGGTTCTAA CAACAAGGGC AACAAGGGGA AGGGAAAGGG CAGCAGAGCC 900
TAA 904
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 95 4e-57 219
WERAM-Arl-0013 Al_scaffold_0006_2135 Arabidopsis lyrata 59 5e-45 178
WERAM-Art-0126 AT5G22650.1 Arabidopsis thaliana 55 1e-44 177
WERAM-Pot-0109 POPTR_0009s15160.1 Populus trichocarpa 66 4e-29 125
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 61 1e-27 121
WERAM-Thc-0115 EOY33573 Theobroma cacao 60 2e-27 119
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 58 4e-27 119
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 59 4e-27 119
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 62 9e-27 118
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 60 6e-26 115
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 60 6e-26 115
WERAM-Sei-0085 Si022778m Setaria italica 59 2e-25 114
WERAM-Zem-0062 GRMZM2G100146_P01 Zea mays 58 2e-24 110
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 57 3e-24 109
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 57 3e-24 109
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 58 4e-24 109
WERAM-Prp-0078 EMJ06874 Prunus persica 58 4e-24 109
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 60 7e-24 108
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 59 7e-24 108
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 60 8e-24 108
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 58 1e-23 107
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 58 1e-23 107
WERAM-Aet-0097 EMT09079 Aegilops tauschii 56 1e-23 107
WERAM-Met-0051 KEH38943 Medicago truncatula 55 9e-23 104
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 57 2e-22 103
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 55 6e-21 98.6
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 46 9e-18 88.2
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 46 2e-17 87.0
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 46 2e-17 87.0
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 43 1e-15 81.3
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 46 1e-15 80.9
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 38 6e-13 72.0
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 37 3e-09 60.1
WERAM-Amt-0052 ERN12770 Amborella trichopoda 60 1e-08 58.2
WERAM-Orm-0014 OMERI01G38240.2 Oryza meridionalis 41 1e-07 54.3
Created Date 25-Jun-2016