WERAM Information

Tag Content
WERAM ID WERAM-Sob-0001
Ensembl Protein ID Sb01g003420.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb01g003420 Sb01g003420.1 Sb01g003420.1
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader PHD 3.90e-11 43.8 39 245
Organism Sorghum bicolor
Domain Profile
  Me_Reader PHD
        PHD.txt  2 tiClvCgkddege 14
                   ++C +C+ +d+++
  Sb01g003420.1 39 DFCSFCD-PDKEN 50
                   69****5.44443 PP
        PHD.txt   2 tiClvCgkddegekemvqCdeCddwfHlkCvklplsslpegkswyCpsCke 52 
                    t+C  Cg  ++ +++++ Cd C++wfH+kCv ++  +++  k++ Cp C  
  Sb01g003420.1 195 TFCGSCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSS 245
                    89****888888889*******************555554479******85 PP
Protein Sequence
(Fasta)		MDMAPAPVSS NPRSVEDIFK DFSGRRAGLV RALTSDVDDF CSFCDPDKEN LCLYGLPNGT 60
WEVSPPADEV PPELPEPALG INFARDGMQR RDWLSLVAVH SDSWLISVAF FYGARLNAND 120
RKRLFSLISD HPSVFEAFAD RKHGRDRSGV DSSGKSRHSS KRANDGHAKN SRAAAPAAKD 180
YDDDDDEEDE EHTETFCGSC GGLYNANEFW IGCDICERWF HGKCVRITPA KAEHIKHYKC 240
PDCSSKKMRQ
Nucleotide Sequence
(Fasta)		AAAGATTGGC GACGAAGCAA GGAAGGCAGC CGAATCCCAA CTCCTGTGTG TGCGCCGTCG 60
CCTCGTCGGC CGCTGTTGCT GCTGTGCCCC TCCCCAGCCG CTCCCGCCCG GAGCACGCCG 120
CCGCCGCCGG CGCGGGCGCG CACCGACGCC GTCGCGTCGC ATGGATATGG CCCCCGCGCC 180
CGTCTCCTCC AACCCGCGCT CGGTCGAGGA TATCTTTAAA GACTTCTCCG GCCGCCGCGC 240
GGGGCTCGTC CGCGCCCTCA CCTCCGATGT GGACGATTTC TGCAGCTTCT GCGACCCAGA 300
TAAGGAGAAT TTGTGTCTCT ACGGCCTTCC CAACGGGACC TGGGAGGTGT CGCCGCCGGC 360
GGACGAGGTT CCGCCGGAGT TGCCCGAGCC GGCGCTCGGC ATCAACTTTG CGCGCGACGG 420
CATGCAGCGC CGCGACTGGC TCTCACTCGT CGCGGTCCAC TCTGACTCGT GGCTCATCTC 480
CGTCGCTTTC TTCTACGGTG CTCGCCTCAA CGCCAACGAC CGGAAGCGCT TATTCAGCTT 540
GATCAGTGAT CATCCTTCTG TCTTTGAAGC ATTCGCGGAC AGGAAACACG GCAGAGATAG 600
GTCTGGGGTT GATAGCAGTG GCAAGTCCAG ACACTCATCA AAGAGAGCAA ACGATGGCCA 660
TGCGAAGAAT TCCAGGGCAG CAGCTCCTGC TGCCAAAGAC TATGACGACG ACGATGACGA 720
GGAAGATGAG GAACACACGG AAACCTTTTG TGGAAGCTGC GGCGGCCTTT ACAACGCGAA 780
TGAGTTCTGG ATCGGCTGCG ACATATGTGA GCGGTGGTTC CACGGCAAGT GCGTGAGGAT 840
CACCCCTGCC AAAGCGGAGC ACATAAAGCA CTACAAGTGC CCGGACTGCA GCTCAAAGAA 900
AATGAGGCAG TAGGTCCCCG CCTGCACTGG CCGTCGCTGA CCTGTTTGAT CTGATCCAAA 960
CCATACTCCG TTGTTTGCCC CAAGGTCGCT GTTAGCAGAG GTGAATTCCT TCATTTTAGG 1020
ACATTTGTGG GGTTGTTATG TGGTGGTAGC CTGGTAGGAA GAGGCAAAGG ACTGATAGAT 1080
ACATGCTCGT CGCTTGTTTT ATTTTATATA TAAATGGCTC GTTCGTTGTT CATCGTTCAT 1140
TGTTTTGCCT GCTTCGTCGC AGACGTTGTG GCGGCATGAA CTGATGAGTG GTTTGTTCTT 1200
GCTGTTTC 1209
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Zem-0003 AC225147.4_FGP003 Zea mays 96 2e-129 459
WERAM-Sei-0134 Si037171m Setaria italica 90 4e-113 404
WERAM-Ors-0037 OS03T0818300-01 Oryza sativa 75 5e-99 357
WERAM-Org-0041 ORGLA03G0356800.1 Oryza glaberrima 75 5e-99 357
WERAM-Orr-0041 ORUFI03G40590.1 Oryza rufipogon 75 4e-98 354
WERAM-Orni-0038 ONIVA03G40570.1 Oryza nivara 75 4e-98 354
WERAM-Orl-0033 KN538803.1_FGP006 Oryza longistaminata 75 4e-98 354
WERAM-Ori-0031 BGIOSGA009559-PA Oryza indica 75 4e-98 354
WERAM-Orgl-0042 OGLUM03G38760.1 Oryza glumaepatula 75 4e-98 354
WERAM-Brd-0001 BRADI1G03900.1 Brachypodium distachyon 71 8e-98 353
WERAM-Orb-0041 OBART03G38930.1 Oryza barthii 75 2e-97 352
WERAM-Orm-0069 OMERI07G06560.1 Oryza meridionalis 77 8e-97 350
WERAM-Orbr-0082 OB07G15980.1 Oryza brachyantha 75 8e-97 350
WERAM-Orp-0071 OPUNC07G07630.1 Oryza punctata 77 2e-96 348
WERAM-Lep-0044 LPERR03G33070.1 Leersia perrieri 75 3e-96 348
WERAM-Sot-0033 PGSC0003DMT400028638 Solanum tuberosum 66 4e-89 324
WERAM-Sol-0130 Solyc10g085180.1.1 Solanum lycopersicum 65 1e-87 320
WERAM-Mua-0047 GSMUA_Achr2P18960_001 Musa acuminata 66 9e-87 317
WERAM-Amt-0010 ERN05231 Amborella trichopoda 67 2e-86 315
WERAM-Viv-0060 VIT_08s0105g00360.t01 Vitis vinifera 68 8e-85 310
WERAM-Prp-0083 EMJ07006 Prunus persica 69 4e-84 308
WERAM-Glm-0018 GLYMA03G07750.1 Glycine max 68 6e-83 304
WERAM-Thc-0059 EOY07191 Theobroma cacao 65 5e-82 301
WERAM-Hov-0103 MLOC_72504.1 Hordeum vulgare 59 6e-82 300
WERAM-Tra-0033 Traes_1DS_59542CFCE.1 Triticum aestivum 62 1e-81 300
WERAM-Pot-0074 POPTR_0006s10180.1 Populus trichocarpa 68 1e-81 299
WERAM-Met-0092 KEH28874 Medicago truncatula 68 1e-80 296
WERAM-Aet-0107 EMT22745 Aegilops tauschii 75 6e-80 294
WERAM-Php-0009 PP1S117_107V6.1 Physcomitrella patens 54 6e-80 294
WERAM-Tru-0043 TRIUR3_20050-P1 Triticum urartu 75 7e-78 287
WERAM-Arl-0100 fgenesh2_kg.6__ 497__ AT5G05610.2 Arabidopsis lyrata 64 1e-77 286
WERAM-Bro-0019 Bo1g141160.1 Brassica oleracea 64 1e-77 286
WERAM-Art-0117 AT5G05610.2 Arabidopsis thaliana 64 1e-77 286
WERAM-Brr-0171 Bra034860.1-P Brassica rapa 64 2e-77 285
WERAM-Sem-0105 EFJ23237 Selaginella moellendorffii 61 5e-74 274
Created Date 25-Jun-2016