| Tag |
Content |
| WERAM ID |
WERAM-Sob-0067 |
| Ensembl Protein ID |
Sb04g007780.1 |
| Gene Name |
|
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDAC |
Class-I |
6.80e-32 |
112.1 |
38 |
337 |
|
| Organism |
Sorghum bicolor |
| Domain Profile |
HDAC Class-I
class-1.txt 5 yaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdg.lf 99
y d+ ++++hp ++ + +++++ gl ++ +i++p +as ++ll +hse y++ lk++ + + e+ ++ + v ++ l+
Sb04g007780.1 38 YSPAYDIEFNGIEKQHPFDSAKWGRVRNFLVDAGLLQNDRIIEPLEASEDDLLVVHSESYLNSLKSSAKVAR---IVEVPAVALLPNLLVQQKlLY 130
555556666667899*************************************************98754332...335556666667777666167 PP
class-1.txt 100 eycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlail.ellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhky 193
+ + ++G+ l+a L+ + ain GG+hh +e Gfc Di l i + + + +rv+ id+d h G+g e+ f +rv t+ +++
Sb04g007780.1 131 PFRKQVGGSILSAKLALE---RGCAINIGGGFHHCSAEEGGGFCAYADISLCIHfAFVRlNISRVMIIDLDAHQGNGHEKDFGSDERVYTLDMYNS 223
777777666666665554...4579***************************9634555599****************************987665 PP
class-1.txt 194 geeffPgt....Gdlsdvgaek..gkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikgh....aecvk 279
g +P +l + +++ ky + l+ g + e y +i+ + ++ ++f+P+ ++ + G+D l gD+lg+ ++s +g ++ +
Sb04g007780.1 224 GI--YPFCiclqSELPKSANDHvaKKYIDQKIELHSGTKTEDYLEILDKALKVAESRFQPQLILYNAGTDILDGDPLGSLKVSPDGVitrdEKVFR 317
55..555411115555555543225788899****************************************************999633324699* PP
class-1.txt 280 fvksfnlpllvlGGGGYtlr 299
f k+ +pll+l GGY +
Sb04g007780.1 318 FAKDQSIPLLMLTSGGYMKS 337
*****************764 PP
|
Protein Sequence
(Fasta) | MASTSGDTSA AEALRRGRIL SSRLYLDGVP SSKAPVVYSP AYDIEFNGIE KQHPFDSAKW 60
GRVRNFLVDA GLLQNDRIIE PLEASEDDLL VVHSESYLNS LKSSAKVARI VEVPAVALLP 120
NLLVQQKLLY PFRKQVGGSI LSAKLALERG CAINIGGGFH HCSAEEGGGF CAYADISLCI 180
HFAFVRLNIS RVMIIDLDAH QGNGHEKDFG SDERVYTLDM YNSGIYPFCI CLQSELPKSA 240
NDHVAKKYID QKIELHSGTK TEDYLEILDK ALKVAESRFQ PQLILYNAGT DILDGDPLGS 300
LKVSPDGVIT RDEKVFRFAK DQSIPLLMLT SGGYMKSSAR VIADSIINLS NKNLIDIDTH 360
CIEIE 365Protein Fasta Sequence
>Sb04g007780.1|Class-I|Sorghum bicolor
MASTSGDTSAAEALRRGRILSSRLYLDGVPSSKAPVVYSPAYDIEFNGIEKQHPFDSAKWGRVRNFLVDAGLLQNDRIIEPLEASEDDLLVVHSESYLNSLKSSAKVARIVEVPAVALLPNLLVQQKLLYPFRKQVGGSILSAKLALERGCAINIGGGFHHCSAEEGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHEKDFGSDERVYTLDMYNSGIYPFCICLQSELPKSANDHVAKKYIDQKIELHSGTKTEDYLEILDKALKVAESRFQPQLILYNAGTDILDGDPLGSLKVSPDGVITRDEKVFRFAKDQSIPLLMLTSGGYMKSSARVIADSIINLSNKNLIDIDTHCIEIE |
Nucleotide Sequence
(Fasta) | GGGTTGGTAC CGTTCGTCAG TCAAATCAAC ACCGAACCAT AACCAATCTC CTTGCGGAGG 60
TGGATGGCGT CGACGTCGGG GGATACATCG GCAGCGGAGG CTCTCCGCCG CGGTCGCATC 120
CTCTCCAGCC GCCTCTACCT CGACGGCGTC CCCAGCTCCA AGGCACCCGT GGTCTACTCG 180
CCGGCGTATG ACATCGAGTT CAACGGGATC GAGAAACAGC ACCCGTTTGA TTCGGCGAAA 240
TGGGGTCGCG TCCGCAACTT CCTTGTGGAC GCAGGGCTCC TCCAGAACGA TCGGATCATC 300
GAGCCGCTGG AAGCCTCCGA GGATGATCTG CTAGTGGTGC ACTCAGAGTC GTACTTGAAC 360
AGCCTTAAGA GCAGCGCGAA GGTTGCCCGC ATTGTAGAGG TTCCAGCAGT GGCACTACTA 420
CCTAACTTGC TTGTTCAGCA AAAACTCCTT TATCCATTTC GGAAGCAGGT GGGTGGCTCC 480
ATTTTATCAG CAAAACTTGC ACTAGAAAGA GGATGTGCTA TCAACATTGG CGGAGGCTTC 540
CACCACTGTT CGGCAGAGGA AGGGGGTGGC TTTTGTGCAT ATGCTGATAT TTCTCTGTGC 600
ATCCATTTTG CTTTTGTTCG TTTAAATATC TCAAGAGTAA TGATCATTGA TCTAGATGCT 660
CACCAAGGAA ATGGCCATGA AAAAGATTTT GGGAGTGATG AGAGAGTTTA CACCTTGGAC 720
ATGTACAACT CTGGAATATA TCCTTTTTGC ATATGCTTAC AATCAGAACT ACCAAAATCG 780
GCTAATGATC ATGTGGCTAA GAAGTACATT GATCAAAAGA TCGAGTTACA TAGTGGGACA 840
AAAACAGAAG ATTATTTGGA GATCCTTGAT AAGGCTCTCA AGGTAGCTGA AAGTAGATTT 900
CAGCCCCAGT TGATTCTGTA CAATGCTGGA ACTGATATCC TAGATGGCGA TCCTTTAGGC 960
AGCCTAAAGG TTAGTCCAGA CGGTGTGATT ACTAGAGATG AAAAGGTTTT CAGGTTTGCA 1020
AAGGATCAGA GTATTCCTCT CCTCATGCTG ACATCAGGAG GCTATATGAA GTCAAGTGCT 1080
CGGGTCATAG CAGATTCAAT TATCAACCTC TCGAACAAAA ACTTGATAGA TATTGATACA 1140
CACTGTATAG AAATTGAATA ATGGTGTCTC GAAGCAAAAC TCGATAGATA TTGGTGCACA 1200
CTGTATAGAA ATTGAATAAT GGATGCACCT TGTGTAAAGA AATTTTATGC TAACTGTGTA 1260
CTTGCACATG TATCAACATG AGAAAGGGAA ATCA
1295Nucleotide Fasta Sequence
>Sb04g007780.1|Class-I|Sorghum bicolor
GGGTTGGTACCGTTCGTCAGTCAAATCAACACCGAACCATAACCAATCTCCTTGCGGAGGTGGATGGCGTCGACGTCGGGGGATACATCGGCAGCGGAGGCTCTCCGCCGCGGTCGCATCCTCTCCAGCCGCCTCTACCTCGACGGCGTCCCCAGCTCCAAGGCACCCGTGGTCTACTCGCCGGCGTATGACATCGAGTTCAACGGGATCGAGAAACAGCACCCGTTTGATTCGGCGAAATGGGGTCGCGTCCGCAACTTCCTTGTGGACGCAGGGCTCCTCCAGAACGATCGGATCATCGAGCCGCTGGAAGCCTCCGAGGATGATCTGCTAGTGGTGCACTCAGAGTCGTACTTGAACAGCCTTAAGAGCAGCGCGAAGGTTGCCCGCATTGTAGAGGTTCCAGCAGTGGCACTACTACCTAACTTGCTTGTTCAGCAAAAACTCCTTTATCCATTTCGGAAGCAGGTGGGTGGCTCCATTTTATCAGCAAAACTTGCACTAGAAAGAGGATGTGCTATCAACATTGGCGGAGGCTTCCACCACTGTTCGGCAGAGGAAGGGGGTGGCTTTTGTGCATATGCTGATATTTCTCTGTGCATCCATTTTGCTTTTGTTCGTTTAAATATCTCAAGAGTAATGATCATTGATCTAGATGCTCACCAAGGAAATGGCCATGAAAAAGATTTTGGGAGTGATGAGAGAGTTTACACCTTGGACATGTACAACTCTGGAATATATCCTTTTTGCATATGCTTACAATCAGAACTACCAAAATCGGCTAATGATCATGTGGCTAAGAAGTACATTGATCAAAAGATCGAGTTACATAGTGGGACAAAAACAGAAGATTATTTGGAGATCCTTGATAAGGCTCTCAAGGTAGCTGAAAGTAGATTTCAGCCCCAGTTGATTCTGTACAATGCTGGAACTGATATCCTAGATGGCGATCCTTTAGGCAGCCTAAAGGTTAGTCCAGACGGTGTGATTACTAGAGATGAAAAGGTTTTCAGGTTTGCAAAGGATCAGAGTATTCCTCTCCTCATGCTGACATCAGGAGGCTATATGAAGTCAAGTGCTCGGGTCATAGCAGATTCAATTATCAACCTCTCGAACAAAAACTTGATAGATATTGATACACACTGTATAGAAATTGAATAATGGTGTCTCGAAGCAAAACTCGATAGATATTGGTGCACACTGTATAGAAATTGAATAATGGATGCACCTTGTGTAAAGAAATTTTATGCTAACTGTGTACTTGCACATGTATCAACATGAGAAAGGGAAATCA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
