WERAM Information

Tag Content
WERAM ID WERAM-Pot-0109
Ensembl Protein ID POPTR_0009s15160.1
Gene Name POPTR_0009s15160g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0009s15160 POPTR_0009s15160.1 POPTR_0009s15160.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 1.00e-29 127
Organism Populus trichocarpa
Domain Profile
  HDAC HD2
Query: 4   MEFWGVEVKAGEPLKVEPKDFCMIHLSQAALGESK-KGNESVPLFVKFDEKKLVLGTLSP 62
           MEFWG+EVK+G+P+ V P++  +IH+SQA+LGE K K  E VPL VK   + LVLGTLS 
Sbjct: 1   MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKVGNQNLVLGTLST 60
Query: 63  ENIPQLSFDLVFEKEFELSHNWKKGSVFFCGYQVIPDDDASDFS 106
           ENIPQL  DLVF+KEFELSH W KGSV+F GY+  P+ +   +S
Sbjct: 61  ENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKT-PNIEPQGYS 103
Query: 183 TPKKAETSKKRATDSATKTPVSSKKAKTA-TPQKTDAKKAGQVTPHXXXXXXXXXXXXXX 241
           TPKK  +SKKRA ++  K PVS+KKAK A TPQKTD KK G                   
Sbjct: 164 TPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTDEKKKG-------------GKAANQ 210
Query: 242 XXXXXXXFSCKSCDKAFGTDGALKSHSQAKHGA 274
                   SC SC K F +  AL+SH++AKH A
Sbjct: 211 SPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 243
Protein Sequence
(Fasta)		MSSMEFWGVE VKAGEPLKVE PKDFCMIHLS QAALGESKKG NESVPLFVKF DEKKLVLGTL 60
SPENIPQLSF DLVFEKEFEL SHNWKKGSVF FCGYQVIPDD DASDFSGDEE DFEFAKADIM 120
KAATAKDKAA KPEKPKATLV EPSIDDDEDD SDEDDSDEDG DSEEGMSLDE DSDDESDSED 180
EETPKKAETS KKRATDSATK TPVSSKKAKT ATPQKTDAKK AGQVTPHPAK GKAAANGNSS 240
KSPKSGGNFS CKSCDKAFGT DGALKSHSQA KHGAK 275
Nucleotide Sequence
(Fasta)		TTTCTCTTGA AAAACCCTAT CTCCTACCTC GCTGCAAGTT GCTTATAAAA ACCCTTTAAA 60
CCCTTTCCCC GTCTCCGCCT CCCTCACTCT CACAACTCCC ACGAAGTCTT TCTCTCCACT 120
TGAAACCTCA AAACCCTTTA AGCTCTCTCA TCTATCGTCA ACCATGTCGT CCATGGAGTT 180
CTGGGGTGTT GAAGTCAAGG CTGGTGAGCC CCTTAAAGTG GAACCCAAAG ACTTCTGCAT 240
GATCCATCTA TCTCAGGCAG CCCTTGGCGA GTCAAAGAAA GGAAATGAAT CTGTTCCCCT 300
TTTTGTTAAA TTCGATGAAA AGAAGCTTGT GTTGGGGACT CTTTCTCCGG AAAACATTCC 360
TCAGTTGTCT TTTGATTTAG TTTTTGAGAA AGAGTTTGAG CTCTCTCACA ACTGGAAAAA 420
GGGGAGTGTT TTCTTCTGTG GCTACCAAGT TATTCCTGAT GATGATGCTT CTGATTTTTC 480
TGGTGATGAA GAGGATTTTG AATTTGCGAA AGCTGATATT ATGAAAGCTG CTACCGCTAA 540
GGATAAAGCT GCCAAACCTG AAAAACCAAA GGCTACTCTT GTAGAGCCAA GCATAGATGA 600
TGACGAGGAT GATTCTGACG AGGATGATTC TGACGAGGAT GGTGATTCTG AAGAGGGTAT 660
GTCTCTTGAT GAAGATTCAG ATGATGAATC TGATAGTGAA GATGAAGAGA CCCCTAAGAA 720
GGCTGAAACC AGCAAGAAGA GGGCTACTGA TTCGGCAACA AAGACACCAG TGTCCTCAAA 780
GAAGGCAAAA ACAGCTACTC CTCAAAAGAC AGATGCTAAG AAGGCCGGGC AAGTTACTCC 840
TCACCCTGCA AAGGGAAAAG CTGCAGCCAA TGGCAACAGC TCCAAGTCCC CAAAATCTGG 900
CGGCAATTTC TCTTGCAAAT CCTGTGACAA GGCATTTGGC ACTGATGGTG CTCTGAAGTC 960
TCACTCACAA GCCAAGCATG GTGCCAAGTG AAACGACTAC TAATTTATAG ATGATATCTC 1020
ATTGAAAGAA CCATGCTATA GGGTTTTAGT AGTTATATGA GAGGTTTATG TTAGTAACTC 1080
ATTTTGAAAT TTTGTTAGAA ATCTACATTT GAACAAATAT TTTTTATGCA TTATGTTTTG 1140
AGTTAAATGA AATGGTTGTG ATGTGTTCAT TACT 1175
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Thc-0115 EOY33573 Theobroma cacao 65 6e-34 141
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 68 4e-33 139
WERAM-Prp-0078 EMJ06874 Prunus persica 61 8e-32 134
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 61 6e-31 131
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 67 8e-31 131
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 63 3e-30 129
WERAM-Arl-0089 fgenesh2_kg.5__ 872__ AT3G44750.1 Arabidopsis lyrata 67 5e-30 128
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 54 6e-30 128
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 59 7e-30 128
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 59 7e-30 128
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 62 8e-30 127
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 62 1e-29 127
WERAM-Art-0083 AT3G44750.1 Arabidopsis thaliana 60 1e-29 127
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 62 5e-29 125
WERAM-Met-0051 KEH38943 Medicago truncatula 55 7e-29 124
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 58 8e-28 121
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 64 2e-27 120
WERAM-Sei-0085 Si022778m Setaria italica 59 1e-26 117
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 59 4e-26 115
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 56 6e-26 115
WERAM-Aet-0097 EMT09079 Aegilops tauschii 59 2e-25 113
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 59 3e-25 112
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 62 4e-25 112
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 62 4e-25 112
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 59 6e-25 111
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 51 5e-24 108
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 50 4e-22 102
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 56 6e-22 101
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 48 2e-20 97.1
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 53 2e-20 96.7
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 53 2e-20 96.7
WERAM-Amt-0052 ERN12770 Amborella trichopoda 66 6e-18 88.6
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 42 2e-14 77.0
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 37 1e-10 64.3
WERAM-Orm-0015 OMERI01G38270.1 Oryza meridionalis 37 3e-08 56.6
Created Date 25-Jun-2016