WERAM Information

Tag Content
WERAM ID WERAM-Sus-0214
Ensembl Protein ID ENSSSCP00000026180.1
Gene Name SMNDC1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSSCG00000030507.1 ENSSSCT00000028296.1 ENSSSCP00000026180.1
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader Tudor 6.40e-13 49.1 73 129
Organism Sus scrofa
Domain Profile
  Me_Reader Tudor
             Tudor.txt   2 skvGlrVvakwssdGyfYsgkiVvkghrvesgeeyysikyedqrkwyilsLekgnrlreqy 62 
                           +kvG++++a ws+dG++Y+++i    ++++ ++ + +i++ ++++ +++ L++ +++ e +
  ENSSSCP00000026180.1  73 WKVGDKCMAIWSEDGQCYEAEI----EEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGR 129
                           9*********************....*****************************999876 PP
Protein Sequence
(Fasta)		MSEDLAKQLA SYKAQLQQVE AALSGNGENE DLLKLKKDLQ EVIELTKDLL STQPSETLAS 60
SDSFASTQPT HSWKVGDKCM AIWSEDGQCY EAEIEEIDEE NGTAAITFAG YGNAEVTPLL 120
NLKPVEEGRK AKEDSGSKPM SKKEMIAQQR EYKKKKALKK AQRIKELEQE REDQKVKWQQ 180
FNNRAYSKNK KGQVKRSIFA SPESVTGKVG VGTCGIADKP MTQYQDTSKY NVRHLMPQ 238
Nucleotide Sequence
(Fasta)		CTCGCGAGAT TTCACCCGCC TCTGTCTTTT CCTCTTTCCA GTGCCCAGTT TTCGTCCACT 60
CTTCTTCGCG GCCGGTAGAT TTCTTCCCTC TTCAGACCGA GACAGCTTGT CGCTGCTGAG 120
ATTTTTCCTG CTGCTGTTGC TGCTGCCACT CTCGCCGCCA CCGCCACTGG GCTCATTTGC 180
CCCGACCCCT TCCCACTGCC CCGACCCCAA CCCCACACAA GATGTCAGAG GATCTAGCAA 240
AGCAGCTGGC AAGCTACAAA GCTCAACTCC AACAAGTTGA AGCTGCTCTC TCTGGAAATG 300
GAGAAAATGA AGATTTGCTA AAATTAAAGA AAGATTTACA GGAAGTTATA GAATTAACCA 360
AAGACCTTCT GTCAACTCAA CCTTCTGAAA CTCTTGCAAG TTCAGACAGT TTTGCTTCTA 420
CTCAGCCCAC ACATTCGTGG AAAGTAGGAG ACAAGTGTAT GGCAATCTGG AGTGAAGATG 480
GACAGTGTTA TGAAGCGGAG ATTGAGGAGA TAGATGAAGA AAACGGCACC GCTGCAATCA 540
CCTTTGCTGG CTATGGCAAT GCTGAAGTGA CTCCACTGTT GAACCTCAAG CCTGTAGAAG 600
AAGGAAGGAA GGCAAAGGAG GACAGTGGCA GCAAACCCAT GTCAAAAAAA GAAATGATTG 660
CCCAGCAGCG TGAATATAAA AAGAAGAAAG CTTTGAAAAA AGCACAGAGA ATAAAAGAAC 720
TTGAGCAGGA AAGAGAAGAC CAGAAGGTGA AATGGCAACA GTTCAACAAT AGAGCCTATT 780
CTAAAAATAA AAAAGGCCAG GTAAAGAGGA GTATTTTTGC TTCACCTGAG AGTGTAACTG 840
GCAAAGTTGG AGTTGGAACA TGTGGAATTG CTGATAAACC TATGACACAA TATCAAGATA 900
CCTCCAAATA CAATGTTAGG CATTTGATGC CTCAATAATC AGAAAAACTG TTGGATTTCA 960
TCTCTGCAGG GCTTTACATT TACCTTTTTA TCCTTATATT TTTCTAAAGG TAAATTATTT 1020
GTTAGATGAG TAAGGAAGAT ACCATTGTCG TCATTATTTG ACTTCAATAG AATGAAACTT 1080
GAAGAAATTG TATTTGATAA CTGCTATTCA TTTAAACTTT TTTCATTACT ACTACCACAG 1140
TTTCCTGGAA GTTTCTTGGA TAAAGCAACT TTTCTAGGTA GATGCTGCGT AAATACAGCA 1200
CTTAGATGAA TTATTGATCT TCCTAATATC AGGCCCCCAC TTAGTGGATG ACATTTACTT 1260
TTTGTAAAGT CCTAACTGGG AATTTTCAGA TGCTTTGACC TTGCCACATA CTCTAGCAAT 1320
TCACTGGGAC ATCAAGGCAG AACACCAACC TGCTGAAGTG AATTTCTGTT AATTTTTTTA 1380
TATTCAGCAT AAACCTAGCT CTTGCCCATT TAAGCCTAAA GTAGTAGTAA TGGCAAAGTT 1440
TGTTTTGATG TTTTTCTTGA TAACTTGTTT CCTAAGCCTA TTAGGCCGTC TCTAAAATTG 1500
ACCCAGCTCT TTATTTTTCA TTGAATTTTA GTTTTATGTA ACAAACCATG TTTAGGACCA 1560
GCTACCTGTT CTAATGTTTT TGGTTTGGTT TTTGGGTTTT TTTGTTTGTA TGTTTGCTTT 1620
TCTCCTGTGT TGATTTTCAC TTATGATAGT GGTACCATTT TTTGGATGTG TAATGTTTAT 1680
ATGAGAAAAC AAAAAGCTGA TGTATAGCCC TGTATACAGT GTAGATACTA TTTTTGTAAA 1740
AAAAGAAAAC AAAAAAACCC AAGGCTAAAT TAATGAACAA GAGTACTGAG TGTTTCATCA 1800
TTAAATTTTT TCTGTATTTC TTGTGCATTA ATCTGGCCAT AATTTCCCTG TATATTATGT 1860
TCATGTAGCT GAGTTTGTAA TTTTTGTTAA CTAGATCAGG TTGTCAGCAT TTGTTGGTTA 1920
TAAGTGAACA TCACAATTTT CCCCAGTTGA GTTTAAGCCA AATATGTGCA TAGAAAAGGG 1980
TATTCCTGCT AATGGAAGAT GGAGATTTTT AGGATGTGTT AATTCAGTTT TTGTATGTTT 2040
AACTTTTATT AAATAAAGTG TTTTTAAAAT CTCCAGGGTG TGTTAACAAA AAGGTGAAGG 2100
CTTAGCTGCC ATCACTGATA CAGTGATTAA GCGTACATCA TTTCCACAGA AAAGATTATT 2160
GAGCATGTGA TAAAGGTTTT GATAAATCCT TATGTACTCA TATTGGACAT AAGAAATGGG 2220
ATCCTAAAAG ACAAACCAGT TTTATTTTAA GGGTTGCCAC TTGTATACAG GTGTTTGTAA 2280
ATTTTTGGTA GAAGGGGGAG GTAACATTTT CATTTCATGA ATTTTAAATT TTTTGTAAAT 2340
TGAAACTTAC AGGAGGACAG TGATTAGAGA ACTTCTCATG TCATCCCTCT ATCTCTCTCC 2400
AACTGTTTTT CCCCCCTGTA ATTTATGGCC AGGGTAGAGA ATATAGGACA AAATGGAAGG 2460
TGAAGTGTTT TTCAATACAA GTCACAAATA ACAGTAGAAA AAGGGCTACT TAGCCTGAAA 2520
AACTTTTAAA TAAAATATAC TGATATTCTT CTTACTAGTA TAACAAACTA TATAAGTCAG 2580
TAGTATCCTT AAAGGATTAC AAGGGAAGCT ATTAAACAGG ACTGAAAAGA AATTTGATGT 2640
ATTCTGTGAC TACACAAAAT AGTTTTTGAT GAGATTACCT TGCTCTGTTA CCTTTTCTGC 2700
ACATTAATTT CCCTGGAGGG CTTTGCAGTA GGAGAGAAAA GGAGGAAAAA AGTGACTATG 2760
TGGTAGAAAA TATTTCTCAA AAATAGGCGT ATTGAATGAA ATCAAGAGCC TTTGTATCAA 2820
AGACCTAGGT GTGGCCCTTT GAAAAGTTCT GTTGTCAGGA TGATAGAGTC TCTAGACTAA 2880
AGTTAAAGAT GAGGAATCCA GGGGAGTCAT GGGTGGTAGT GTGATGCTTA AGCTGAGAAG 2940
ATGCTTATTG AGAAGCATAC CATTGGTACT TTACAAATGC AGGTGGCCGA GCTCTCAGTA 3000
TGCGAAAATC AAATATGATG CTTGGTCTTA AGAAACTGTG TTACAAAATT TAGAGTTTCC 3060
CCTCTGTCAA GAAAGGAGAC TTGAAGCTCT GAAACTGACA GACTGAACCG TACTCAATGG 3120
CCCACACGTT GCTATGGTTG CATCTGTCTT CTCAAAACTT GTTGACTTTG TTATTGACCA 3180
TTGCAAGGAA AGAACAGTCC TAACACCCCA AAACAAGTAA ATAATTTTAA TAATCACAGA 3240
TTGAAAAATT TTAATTAACA TCAAGAAAGG CCATATATTG GAAGAGCAAG GACTCTGGAG 3300
CCAAACTGCT CTGAATCTTG GCTCCCTCCT TATCTCTGTG CAAAACTCTT TGCATCTCTT 3360
TCCTCAGCTA TGGCATGAAA TTCATACTTG TTTCATTAGG TTTTAAGGAT GAGTCAGTAT 3420
GTATAAAGTG TTCAGTAGAG TACCTGGCAT ATTGTAAGCA CTATAGGTAA GTGTTTGCTA 3480
CTACCGTGCA GATGTAATGA TGAATATCTG ATCTTTTTTC CTTATCTTGA AAAACAATTC 3540
ACATTATAAT GGAAATATTA CCCAATTGCT TTTGATTTGA GGCTCCTAAT TATAAGTACT 3600
ACTGAAGTGT TACCCATTAC CAAAGTTGTA AGACATACTA AGTATATGCT GGTTAAAGTT 3660
TTAAATTTTT GTGTTGGAAT ATTTTAGGGT TTGTTTCTTA ATGGGAAGGG GGTACAGGTC 3720
ATAAAATAAC CCCTAATTCT TATTTATTTT TTGGTTTTGT CTTTTTAGGG CCGCACCTAT 3780
GGCATATGTA AGTTCCAGGC CAGGGGTCAA ATCGGAGCTG CAGCTGCTGA CCTATACCAC 3840
AGCCACAGCA ACTCGATCCG AGCCACGTCT GCGACCTACA CTGCAGCTTG TGGCCACTCT 3900
GGATCTTTTA ACCCACTAAG CAAGGCCAGG GATTGAACCC TCATCCTCAT GGATAGTAGT 3960
CAGATTCTTA ACCTACCAAG CTGCAGTGGG AACTCCACCA ATTCTTATTT AAAATTGAAG 4020
AGGAATTCTT GGATCTGGGT CCTACCCCAG ACCTATCTAG GACAAAGATA TGTCTTTTTT 4080
TTTTGACAAA TGTGGTTGAT TCTGATGTAC ATCCCTGACT GAACACCGTG TTTTAGGTTA 4140
GATGTGAAAA TGGTTTGATT TTTGAAATGA AGTAAAAATT TCCTTAATTG GCAATTTTCT 4200
GAGCCCAATT ATGAAGACTT AGGCTTCTAC CCAAAATGAA ATACATCTAT TTATTGTAAG 4260
AGCTCATTTT TTTAAGTGCT TATTTTTTCC TAACAAAGAG TGTGTGTGCA TGTATGTGTG 4320
TGTTTACATT GTAATGGAAT TTTGATGCTA AGTGTGTCTG CCTTTAAAAT ATCAAGGGAA 4380
AACCATCAGG TAACAAAGGA AAATCATAGT TTTGTAAGTT GTGTGTGTCT ATAGATTGTG 4440
ATCATATAAG GTGAAAAATA TCACTTGCAA AGTAAGCCAA AAAATATTTT TAAAGCTTTG 4500
ATTTGGCTTT TTGCCTCAAC TTGGTATTAA CTGAAATATA AAAGAAGGAA GAAAATCTGT 4560
AAAAACCCAC AAGGTTTTGC ATTTGTTAAA ATATTTATAG AGAGCTCAAT AAACATGTTG 4620
AATTGTATTA AGTACTTGTA TTATACTAT
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Poa-0026 ENSPPYP00000003078.1 Pongo abelii 100 2e-119 425
WERAM-Paa-0147 ENSPANP00000020975.1 Papio anubis 100 2e-119 425
WERAM-Pat-0022 ENSPTRP00000005182.3 Pan troglodytes 100 2e-119 425
WERAM-Nol-0168 ENSNLEP00000018780.1 Nomascus leucogenys 100 2e-119 425
WERAM-Mup-0020 ENSMPUP00000002068.1 Mustela putorius furo 100 2e-119 425
WERAM-Mam-0060 ENSMMUP00000010218.1 Macaca mulatta 100 2e-119 425
WERAM-Gog-0116 ENSGGOP00000009828.2 Gorilla gorilla 100 2e-119 425
WERAM-Chs-0056 ENSCSAP00000001485.1 Chlorocebus sabaeus 100 2e-119 425
WERAM-Caj-0197 ENSCJAP00000034639.1 Callithrix jacchus 100 2e-119 425
WERAM-Aim-0064 ENSAMEP00000005552.1 Ailuropoda melanoleuca 100 2e-119 425
WERAM-Ocp-0134 ENSOPRP00000014013.1 Ochotona princeps 100 2e-119 425
WERAM-Hos-0101 ENSP00000358605.1 Homo sapiens 99 3e-119 424
WERAM-Loa-0129 ENSLAFP00000012022.2 Loxodonta africana 99 3e-119 424
WERAM-Ova-0100 ENSOARP00000010198.1 Ovis aries 99 5e-119 424
WERAM-Otg-0012 ENSOGAP00000000511.2 Otolemur garnettii 99 5e-119 424
WERAM-Bot-0005 ENSBTAP00000000722.2 Bos taurus 99 5e-119 424
WERAM-Tub-0111 ENSTBEP00000012421.1 Tupaia belangeri 99 5e-119 424
WERAM-Ict-0061 ENSSTOP00000005452.2 Ictidomys tridecemlineatus 99 6e-119 423
WERAM-Mod-0084 ENSMODP00000013212.2 Monodelphis domestica 99 8e-119 423
WERAM-Soa-0056 ENSSARP00000005482.1 Sorex araneus 99 8e-119 423
WERAM-Myl-0175 ENSMLUP00000014580.1 Myotis lucifugus 99 1e-118 422
WERAM-Orc-0076 ENSOCUP00000007040.2 Oryctolagus cuniculus 99 1e-118 422
WERAM-Fec-0182 ENSFCAP00000025256.1 Felis catus 99 2e-118 422
WERAM-Dan-0107 ENSDNOP00000012705.2 Dasypus novemcinctus 100 2e-118 422
WERAM-Mum-0066 ENSMUSP00000025997.5 Mus musculus 99 2e-118 421
WERAM-Caf-0119 ENSCAFP00000015780.3 Canis familiaris 100 3e-118 421
WERAM-Ran-0098 ENSRNOP00000020539.5 Rattus norvegicus 98 7e-118 420
WERAM-Ora-0017 ENSOANP00000002552.2 Ornithorhynchus anatinus 97 1e-116 416
WERAM-Cap-0079 ENSCPOP00000005709.2 Cavia porcellus 93 1e-113 406
WERAM-Tag-0132 ENSTGUP00000010931.1 Taeniopygia guttata 96 2e-110 395
WERAM-Fia-0037 ENSFALP00000002401.1 Ficedula albicollis 96 2e-110 395
WERAM-Gaga-0089 ENSGALP00000013929.4 Gallus gallus 96 3e-110 395
WERAM-Anc-0058 ENSACAP00000005857.1 Anolis carolinensis 95 9e-109 389
WERAM-Pes-0113 ENSPSIP00000013643.1 Pelodiscus sinensis 97 2e-108 388
WERAM-Vip-0036 ENSVPAP00000003145.1 Vicugna pacos 99 5e-102 367
WERAM-Sah-0170 ENSSHAP00000017892.1 Sarcophilus harrisii 98 8e-102 366
WERAM-Dio-0058 ENSDORP00000005294.1 Dipodomys ordii 89 2e-100 362
WERAM-Lac-0064 ENSLACP00000008810.1 Latimeria chalumnae 84 4e-98 354
WERAM-Leo-0124 ENSLOCP00000015205.1 Lepisosteus oculatus 84 3e-95 344
WERAM-Anp-0034 ENSAPLP00000003829.1 Anas platyrhynchos 96 3e-94 342
WERAM-Meg-0112 ENSMGAP00000011207.2 Meleagris gallopavo 95 2e-91 332
WERAM-Orn-0003 ENSONIP00000000550.1 Oreochromis niloticus 76 7e-90 327
WERAM-Dar-0116 ENSDARP00000038215.5 Danio rerio 79 2e-89 325
WERAM-Prc-0158 ENSPCAP00000015111.1 Procavia capensis 98 2e-89 325
WERAM-Chh-0026 ENSCHOP00000002599.1 Choloepus hoffmanni 99 4e-89 324
WERAM-Asm-0216 ENSAMXP00000020915.1 Astyanax mexicanus 76 4e-89 324
WERAM-Gaa-0098 ENSGACP00000012540.1 Gasterosteus aculeatus 76 8e-89 323
WERAM-Tar-0084 ENSTRUP00000016366.1 Takifugu rubripes 74 3e-87 318
WERAM-Orla-0056 ENSORLP00000007459.1 Oryzias latipes 76 7e-87 317
WERAM-Ten-0164 ENSTNIP00000016321.1 Tetraodon nigroviridis 75 2e-86 315
WERAM-Xim-0155 ENSXMAP00000012780.1 Xiphophorus maculatus 75 5e-86 314
WERAM-Pof-0213 ENSPFOP00000017186.1 Poecilia formosa 76 2e-85 312
WERAM-Gam-0182 ENSGMOP00000017798.1 Gadus morhua 76 2e-84 309
WERAM-Tut-0090 ENSTTRP00000007470.1 Tursiops truncatus 79 7e-84 307
WERAM-Tas-0066 ENSTSYP00000006045.1 Tarsius syrichta 79 7e-84 307
WERAM-Ere-0065 ENSEEUP00000005400.1 Erinaceus europaeus 79 3e-83 305
WERAM-Pem-0076 ENSPMAP00000008472.1 Petromyzon marinus 67 2e-75 278
WERAM-Ect-0134 ENSETEP00000015345.1 Echinops telfairi 53 9e-50 194
WERAM-Xet-0102 ENSXETP00000033649.2 Xenopus tropicalis 81 2e-48 189
WERAM-Mae-0094 ENSMEUP00000009229.1 Macropus eugenii 58 3e-47 185
WERAM-Drm-0076 FBpp0289146 Drosophila melanogaster 41 5e-25 111
WERAM-Mua-0136 GSMUA_Achr8P34180_001 Musa acuminata 31 4e-14 75.5
WERAM-Lab-0003 EDR15018 Laccaria bicolor 33 2e-13 73.6
WERAM-Pot-0055 POPTR_0004s23810.1 Populus trichocarpa 31 2e-13 73.6
WERAM-Prp-0076 EMJ24376 Prunus persica 29 3e-12 69.3
WERAM-Met-0118 KEH32747 Medicago truncatula 29 8e-12 67.8
WERAM-Lep-0085 LPERR08G00910.1 Leersia perrieri 30 1e-11 67.0
WERAM-Orbr-0094 OB08G10830.1 Oryza brachyantha 30 2e-11 67.0
WERAM-Sol-0019 Solyc01g103020.2.1 Solanum lycopersicum 29 2e-11 66.6
WERAM-Glm-0215 GLYMA17G00560.1 Glycine max 29 2e-11 66.2
WERAM-Orr-0090 ORUFI08G00760.1 Oryza rufipogon 30 8e-11 64.3
WERAM-Orni-0085 ONIVA08G00730.1 Oryza nivara 30 8e-11 64.3
WERAM-Ori-0093 BGIOSGA027775-PA Oryza indica 30 8e-11 64.3
WERAM-Orgl-0084 OGLUM08G00790.1 Oryza glumaepatula 30 8e-11 64.3
WERAM-Org-0087 ORGLA08G0001000.1 Oryza glaberrima 30 8e-11 64.3
WERAM-Orb-0087 OBART08G00720.1 Oryza barthii 30 8e-11 64.3
WERAM-Sot-0061 PGSC0003DMT400053385 Solanum tuberosum 29 8e-11 64.3
WERAM-Art-0036 AT2G02570.1 Arabidopsis thaliana 29 9e-11 64.3
WERAM-Brr-0132 Bra026585.1-P Brassica rapa 30 1e-10 64.3
WERAM-Sob-0098 Sb07g001010.1 Sorghum bicolor 28 1e-10 64.3
WERAM-Arl-0131 scaffold_500192.1 Arabidopsis lyrata 29 1e-10 63.5
WERAM-Zem-0007 GRMZM2G005737_P01 Zea mays 27 2e-10 63.2
WERAM-Brd-0073 BRADI3G13410.3 Brachypodium distachyon 28 3e-10 62.4
WERAM-Mel-0026 EGG10984 Melampsora laricipopulina 31 4e-10 62.0
WERAM-Sei-0072 Si017933m Setaria italica 28 1e-09 60.8
WERAM-Viv-0076 VIT_12s0035g01830.t01 Vitis vinifera 27 6e-09 58.2
WERAM-Bro-0128 Bo7g080510.1 Brassica oleracea 30 1e-08 57.4
WERAM-Chr-0026 EDP07443 Chlamydomonas reinhardtii 31 3e-08 55.8
WERAM-Orl-0027 KN538777.1_FGP011 Oryza longistaminata 30 6e-08 55.1
WERAM-Ors-0078 OS08T0109900-01 Oryza sativa 29 1e-07 53.5
WERAM-Eqc-0118 ENSECAP00000013134.1 Equus caballus 50 3e-07 52.8
WERAM-Tra-0312 Traes_7BL_DB71F86C2.1 Triticum aestivum 28 3e-07 52.8
WERAM-Put-0003 PTTG_02468P0 Puccinia triticina 30 4e-07 52.4
WERAM-Tru-0060 TRIUR3_24898-P1 Triticum urartu 28 6e-07 51.6
WERAM-Pug-0026 EFP86213 Puccinia graminis 29 8e-07 51.2
WERAM-Orp-0083 OPUNC08G00700.1 Oryza punctata 29 1e-06 50.8
WERAM-Ptv-0052 ENSPVAP00000005647.1 Pteropus vampyrus 52 2e-06 50.1
Created Date 25-Jun-2016