WERAM Information

Tag Content
WERAM ID WERAM-Brr-0050
Ensembl Protein ID Bra009513.1-P
Gene Name HD2C
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Bra009513 Bra009513.1 Bra009513.1-P
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 5.00e-36 148
Organism Brassica rapa
Domain Profile
  HDAC HD2
Query: 56  VEVKSGSPLRVDPGEEMLVHISLAALGEKKNGGNEPVRLYMKVGDQKLVIGTLSHDKVPQ 115
           VEVK+G PL +DPG + LVHIS  ALGE KN   EP++LY+ VG  KL+IGTLSH+K PQ
Sbjct: 6   VEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTVGSDKLLIGTLSHEKFPQ 65
Query: 116 LCTEIVVERSFELSHSWKDGSVYFSGYRVDAHDSDSYPYRLAFDNLFMNMLLGLAVFDIL 175
           L TEIV+ER+F LSH+WK+GSV+FSGY+VDA  SD  P  L                 I 
Sbjct: 66  LSTEIVLERNFALSHTWKNGSVFFSGYKVDA--SDPEPEDL-----------------ID 106
Query: 176 DSLSDDDEPAVAKSGVKQVNFQLPN 200
           D L      A  KS  KQVNFQLPN
Sbjct: 107 DQLEAAGFKAAPKSAAKQVNFQLPN 131
Query: 286 FVTPQKSESKKPHVHVATPHPXXXXXXXXX--XXXXXXXXXXTPKSANAFGCSSCNRTFT 343
           FVTPQK++SKKPHVHVATPHP                     TPKSA AFGC SC RTFT
Sbjct: 218 FVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFT 277
Query: 344 SEMGLQSHTKAKHSAAA 360
           SEMGLQSHTKAKHSAAA
Sbjct: 278 SEMGLQSHTKAKHSAAA 294
Protein Sequence
(Fasta)		MEGFRRCYPL LDALESSNRS RLLLEPSLPS HPSPSARYRS CQWSSGVKRS PNLLRVEVKS 60
GSPLRVDPGE EMLVHISLAA LGEKKNGGNE PVRLYMKVGD QKLVIGTLSH DKVPQLCTEI 120
VVERSFELSH SWKDGSVYFS GYRVDAHDSD SYPYRLAFDN LFMNMLLGLA VFDILDSLSD 180
DDEPAVAKSG VKQVNFQLPN DDAKAEEDSE EDDSDDDEDD DDSEDEEEEK KVTAEVEEDD 240
DDEDSSDDEE DDSADEETPE KKVEEAKKRP AEATTSKTAS NKKAKFVTPQ KSESKKPHVH 300
VATPHPSKGG KSSGSNGESS KQQQQTPKSA NAFGCSSCNR TFTSEMGLQS HTKAKHSAAA 360
Nucleotide Sequence
(Fasta)		ATGGAGGGTT TTCGCCGTTG TTACCCCTTA CTCGACGCCC TAGAAAGCTC TAATCGCTCT 60
CGTCTTCTTC TAGAACCTTC TCTTCCGTCG CATCCGTCGC CGTCAGCTCG TTACCGATCG 120
TGTCAATGGA GTTCTGGGGT AAAACGATCT CCTAACTTAC TACGTGTTGA GGTTAAGAGT 180
GGTTCACCAC TTAGGGTGGA TCCTGGGGAG GAGATGCTTG TGCACATCTC ACTGGCTGCT 240
CTAGGCGAGA AGAAGAACGG TGGAAACGAG CCGGTCAGGC TATACATGAA AGTGGGAGAC 300
CAGAAGCTTG TGATTGGGAC GCTGTCACAC GATAAGGTCC CTCAGCTCTG CACGGAGATT 360
GTGGTGGAGA GGAGTTTTGA GCTGTCTCAT AGTTGGAAGG ATGGGAGCGT TTACTTCTCT 420
GGTTACAGAG TTGATGCTCA TGATTCTGAT TCATATCCTT ATCGCTTAGC CTTTGATAAT 480
TTATTTATGA ATATGCTTTT GGGACTTGCT GTCTTTGATA TCCTTGACTC TCTTTCTGAT 540
GATGATGAGC CAGCTGTTGC GAAATCAGGT GTGAAGCAGG TGAACTTTCA GTTGCCTAAT 600
GACGATGCCA AGGCCGAGGA AGATAGTGAG GAGGATGATA GTGATGATGA TGAGGATGAT 660
GACGACTCTG AGGATGAGGA GGAAGAAAAG AAGGTTACTG CTGAAGTTGA AGAGGACGAT 720
GATGATGAAG ACTCATCTGA CGATGAGGAA GATGATTCAG CAGACGAGGA GACCCCAGAG 780
AAGAAGGTTG AAGAAGCCAA GAAGAGGCCT GCGGAAGCCA CCACCTCGAA GACTGCTTCA 840
AACAAGAAGG CTAAGTTCGT AACTCCTCAG AAATCAGAAT CGAAGAAGCC ACACGTCCAC 900
GTTGCGACTC CGCATCCGTC AAAAGGAGGA AAGAGCTCTG GAAGCAATGG AGAGTCGTCG 960
AAGCAGCAGC AGCAGACACC AAAGTCTGCA AATGCATTTG GGTGCAGCTC CTGCAACAGA 1020
ACATTTACTT CGGAGATGGG CTTGCAGTCT CACACCAAGG CCAAACACAG TGCAGCTGCT 1080
TGA 1084
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Bro-0186 Bo9g181760.1 Brassica oleracea 82 5e-82 301
WERAM-Arl-0026 fgenesh1_pg.C_scaffold_6000249 Arabidopsis lyrata 52 3e-38 156
WERAM-Art-0114 AT5G03740.1 Arabidopsis thaliana 55 7e-36 148
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 60 1e-27 121
WERAM-Pot-0048 POPTR_0004s20020.1 Populus trichocarpa 54 7e-26 115
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 56 7e-24 108
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 56 5e-23 105
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 51 2e-22 103
WERAM-Thc-0115 EOY33573 Theobroma cacao 53 3e-22 103
WERAM-Mua-0063 GSMUA_Achr3P22840_001 Musa acuminata 47 8e-22 102
WERAM-Met-0051 KEH38943 Medicago truncatula 51 2e-20 97.8
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 52 4e-20 96.3
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 52 4e-20 96.3
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 52 5e-20 95.9
WERAM-Sei-0085 Si022778m Setaria italica 51 1e-19 94.7
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 47 2e-19 94.4
WERAM-Sob-0127 Sb09g026730.1 Sorghum bicolor 51 3e-19 93.6
WERAM-Zem-0062 GRMZM2G100146_P01 Zea mays 49 2e-18 90.5
WERAM-Prp-0078 EMJ06874 Prunus persica 49 4e-18 89.7
WERAM-Aet-0097 EMT09079 Aegilops tauschii 48 9e-18 88.6
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 44 2e-17 87.4
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 45 9e-16 82.0
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 48 1e-15 81.6
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 48 3e-15 80.1
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 50 4e-15 79.7
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 50 5e-15 79.3
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 43 6e-14 75.9
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 42 4e-11 66.6
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 42 4e-11 66.6
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 39 4e-11 66.2
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 46 6e-11 65.9
WERAM-Amt-0052 ERN12770 Amborella trichopoda 43 2e-09 60.8
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 38 1e-07 55.1
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 32 3e-06 50.4
Created Date 25-Jun-2016