Tag |
Content |
WERAM ID |
WERAM-Bro-0132 |
Ensembl Protein ID |
Bo7g095520.1 |
Gene Name |
HDA2 |
Ensembl Information |
|
Status |
Unreviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDAC |
Class-IV |
1.90e-150 |
501.6 |
89 |
374 |
HDAC |
Class-I |
7.60e-25 |
89.6 |
77 |
365 |
|
Organism |
Brassica oleracea |
Domain Profile |
HDAC Class-IV
class-4.txt 1 leklhpfdaskwkkvikflkeeklledealveareaskedllvvhtrkylkslksslkvatiteiplvaflpnflvqrkvlrplrlqagGtilaakl 97 +eklhpfd++kw++v+kfl+++ +le++++ve+ eas++dllvvh+ +yl+slkss++va+ite+p+vaf+pnflvq+kvl p+r+q+gGtilaakl Bo7g095520.1 89 IEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITEVPPVAFFPNFLVQQKVLSPFRKQVGGTILAAKL 185 79*********************************************************************************************** PP class-4.txt 98 averGwainvGGGfhhcsserGGGfcayaditlaikflferlkaisrviiidldahqGnGherdfaddkrvyildvynreiypkdrvakeairrkve 194 averGwainvGGGfhhc++erGGGfca+adi+l+i+f+f rl isrv+iidldahqGnGhe+d+ dd+rvyild+yn+eiyp d+ a+++i++kve Bo7g095520.1 186 AVERGWAINVGGGFHHCTAERGGGFCAFADISLCIHFAFLRLS-ISRVMIIDLDAHQGNGHETDLGDDSRVYILDMYNPEIYPYDYSARRFIDQKVE 281 *****************************************98.***************************************************** PP class-4.txt 195 lesgtedeeylekleralkkslqefepdlvvynaGtdvleGdrlGalkispegivkrdevvfrlvrakdipivmvtsGGyqkrsarviadsil 287 ++sgt ++eyl+kl++al+ + +f+p++vvynaGtd+l+Gd+lG lkisp+gi++rde+vfr++r++++p+vm+tsGGy+k++arviadsi+ Bo7g095520.1 282 VRSGTSTDEYLRKLDKALEVAFLNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSRDEKVFRVAREREVPVVMLTSGGYMKSNARVIADSIE 374 *******************************************************************************************95 PP
HDAC Class-I
class-1.txt 4 ayaydedvgeyhygqkhpmkpkrlsltheLvlnyglskkleivkpkkasaeellkfhseeyieflkkvepenaeelskelkkfnvgedcPvfdglfe 100 y d++ + +++ hp ++++ + +++++ g ++ +iv+p +as ++ll +hs +y++ lk++ + + + + + v +++ + Bo7g095520.1 77 IYSSAYDISFMGIEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITE---VPPVAFFPNFLVQQKVLS 170 5667778888889999*************************************************98765444333...333333445566666666 PP class-1.txt 101 ycqlitGasleaakkLnkkeadiainwaGGlhhakkseasGfcyvnDivlail.ellk.khkrvlyididlhhGDgveeafyttdrvmtvsfhkyge 195 + G+++ aak L e+ ain GG+hh ++ Gfc Di l i +l+ + +rv+ id+d h G+g e + +rv + y++ Bo7g095520.1 171 PFRKQVGGTILAAK-LA-VERGWAINVGGGFHHCTAERGGGFCAFADISLCIHfAFLRlSISRVMIIDLDAHQGNGHETDLGDDSRVYIL--DMYNP 263 66677788886664.44.45678***************************9963455559***************************986..56899 PP class-1.txt 196 effPgtGdlsdvgaekgkyyavnvPlkdgidDesyekifksviskvieafePeavvlqcGaDslagDrlgefnlsikghae....cvkfvksfnlpl 288 e +P + ++ v ++ g ++y + + + ++ + f+Pe+vv + G+D l gD+lg ++s +g+++ + ++ ++ ++p+ Bo7g095520.1 264 EIYP-------YDYSARRFIDQKVEVRSGTSTDEYLRKLDKALEVAFLNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSrdekVFRVAREREVPV 353 7777.......445556777778999***99888988899999*********************************998643344899999****** PP class-1.txt 289 lvlGGGGYtlrn 300 ++l GGY + n Bo7g095520.1 354 VMLTSGGYMKSN 365 ********9887 PP
|
Protein Sequence (Fasta) | MKDVRVVSTW TDLTRDSAVY LLFTFSAIKV SQFIYRCFQS SETSSFSMET HPEALRRERI 60 LSSKLYFNVP ETKVSIIYSS AYDISFMGIE KLHPFDSTKW RRVCKFLVSD GFLEEKSIVE 120 PLEASNSDLL VVHSLNYLNS LKSSATVARI TEVPPVAFFP NFLVQQKVLS PFRKQVGGTI 180 LAAKLAVERG WAINVGGGFH HCTAERGGGF CAFADISLCI HFAFLRLSIS RVMIIDLDAH 240 QGNGHETDLG DDSRVYILDM YNPEIYPYDY SARRFIDQKV EVRSGTSTDE YLRKLDKALE 300 VAFLNFQPEM VVYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRVARERE VPVVMLTSGG 360 YMKSNARVIA DSIENLSRQG LIKTQLDSAS T 391Protein Fasta Sequence
>Bo7g095520.1|Class-I|Brassica oleracea MKDVRVVSTWTDLTRDSAVYLLFTFSAIKVSQFIYRCFQSSETSSFSMETHPEALRRERILSSKLYFNVPETKVSIIYSSAYDISFMGIEKLHPFDSTKWRRVCKFLVSDGFLEEKSIVEPLEASNSDLLVVHSLNYLNSLKSSATVARITEVPPVAFFPNFLVQQKVLSPFRKQVGGTILAAKLAVERGWAINVGGGFHHCTAERGGGFCAFADISLCIHFAFLRLSISRVMIIDLDAHQGNGHETDLGDDSRVYILDMYNPEIYPYDYSARRFIDQKVEVRSGTSTDEYLRKLDKALEVAFLNFQPEMVVYNAGTDILDGDPLGLLKISPDGITSRDEKVFRVAREREVPVVMLTSGGYMKSNARVIADSIENLSRQGLIKTQLDSAST
|
Nucleotide Sequence (Fasta) | ATGAAAGATG TCCGAGTTGT CTCGACGTGG ACCGATTTAA CTCGTGACTC AGCTGTTTAC 60 TTGCTATTCA CGTTTTCCGC CATCAAAGTC TCCCAATTTA TCTACCGTTG CTTTCAATCA 120 TCCGAAACGT CATCGTTCTC GATGGAGACT CACCCAGAAG CTCTTAGGCG AGAGCGGATT 180 CTCTCCAGCA AACTCTACTT CAACGTCCCC GAAACAAAGG TTTCGATCAT CTATTCATCA 240 GCATACGACA TCTCCTTCAT GGGGATTGAG AAGTTGCATC CGTTTGATTC AACCAAGTGG 300 CGTAGAGTTT GCAAGTTCCT TGTTTCTGAT GGGTTCTTGG AGGAGAAATC AATCGTTGAG 360 CCTCTAGAAG CTTCCAACAG TGATCTTCTA GTGGTACATT CGTTGAACTA CTTAAACAGT 420 TTGAAAAGCA GTGCAACTGT CGCTAGGATA ACCGAGGTTC CACCAGTTGC TTTCTTCCCA 480 AACTTTCTTG TGCAGCAGAA GGTTCTTAGC CCATTCCGGA AGCAGGTTGG TGGGACGATT 540 CTGGCAGCTA AACTTGCAGT GGAACGTGGA TGGGCAATAA ACGTAGGAGG AGGTTTTCAT 600 CATTGTACTG CTGAAAGAGG AGGCGGGTTT TGTGCTTTCG CTGATATTTC TCTTTGTATT 660 CACTTTGCTT TTCTTCGTCT TAGCATCTCC AGGGTTATGA TAATAGATCT TGATGCTCAT 720 CAAGGGAATG GCCATGAAAC AGATCTTGGG GATGATAGTC GTGTTTACAT TCTGGATATG 780 TACAATCCTG AGATATACCC TTACGATTAT AGTGCTAGAA GATTTATCGA TCAGAAGGTT 840 GAAGTGAGGA GCGGGACCAG CACTGATGAG TATTTGAGGA AGCTAGATAA AGCGCTTGAG 900 GTTGCTTTCC TAAACTTCCA ACCAGAGATG GTAGTTTACA ATGCTGGAAC CGATATCTTA 960 GACGGAGACC CTCTGGGGCT TCTAAAGATA AGCCCTGATG GTATAACAAG TAGAGACGAG 1020 AAAGTCTTCA GAGTTGCAAG GGAGAGAGAG GTTCCTGTTG TGATGCTGAC TTCAGGCGGG 1080 TACATGAAGT CCAACGCCAG AGTTATTGCG GATTCCATAG AGAATCTCTC ACGTCAAGGG 1140 TTAATCAAGA CACAACTGGA CTCAGCTTCC ACGTGA
1177Nucleotide Fasta Sequence
>Bo7g095520.1|Class-I|Brassica oleracea ATGAAAGATGTCCGAGTTGTCTCGACGTGGACCGATTTAACTCGTGACTCAGCTGTTTACTTGCTATTCACGTTTTCCGCCATCAAAGTCTCCCAATTTATCTACCGTTGCTTTCAATCATCCGAAACGTCATCGTTCTCGATGGAGACTCACCCAGAAGCTCTTAGGCGAGAGCGGATTCTCTCCAGCAAACTCTACTTCAACGTCCCCGAAACAAAGGTTTCGATCATCTATTCATCAGCATACGACATCTCCTTCATGGGGATTGAGAAGTTGCATCCGTTTGATTCAACCAAGTGGCGTAGAGTTTGCAAGTTCCTTGTTTCTGATGGGTTCTTGGAGGAGAAATCAATCGTTGAGCCTCTAGAAGCTTCCAACAGTGATCTTCTAGTGGTACATTCGTTGAACTACTTAAACAGTTTGAAAAGCAGTGCAACTGTCGCTAGGATAACCGAGGTTCCACCAGTTGCTTTCTTCCCAAACTTTCTTGTGCAGCAGAAGGTTCTTAGCCCATTCCGGAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTTGCAGTGGAACGTGGATGGGCAATAAACGTAGGAGGAGGTTTTCATCATTGTACTGCTGAAAGAGGAGGCGGGTTTTGTGCTTTCGCTGATATTTCTCTTTGTATTCACTTTGCTTTTCTTCGTCTTAGCATCTCCAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGATCTTGGGGATGATAGTCGTGTTTACATTCTGGATATGTACAATCCTGAGATATACCCTTACGATTATAGTGCTAGAAGATTTATCGATCAGAAGGTTGAAGTGAGGAGCGGGACCAGCACTGATGAGTATTTGAGGAAGCTAGATAAAGCGCTTGAGGTTGCTTTCCTAAACTTCCAACCAGAGATGGTAGTTTACAATGCTGGAACCGATATCTTAGACGGAGACCCTCTGGGGCTTCTAAAGATAAGCCCTGATGGTATAACAAGTAGAGACGAGAAAGTCTTCAGAGTTGCAAGGGAGAGAGAGGTTCCTGTTGTGATGCTGACTTCAGGCGGGTACATGAAGTCCAACGCCAGAGTTATTGCGGATTCCATAGAGAATCTCTCACGTCAAGGGTTAATCAAGACACAACTGGACTCAGCTTCCACGTGA
|
Sequence Source |
Ensembl |
Orthology |
|
Created Date |
25-Jun-2016 |