WERAM Information

Tag Content
WERAM ID WERAM-Arl-0013
Ensembl Protein ID Al_scaffold_0006_2135
Gene Name HD2B
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Al_scaffold_0006_2135 Al_scaffold_0006_2135 Al_scaffold_0006_2135
Status Unreviewed
Classification
Type Family E-value Score Start End
HDAC HD2 2.00e-41 166
Organism Arabidopsis lyrata
Domain Profile
  HDAC HD2
Query: 9   YLGIEVKPGKPTKVTPEEDSLVHISQASLDCKVKSGESVVLTVTVDGTKLVIGTLSQEKF 68
           + G+ V P   TKVTPEEDSLVHISQASLDC VKSGESVVL+VTV G KLVIGTLSQ+KF
Sbjct: 3   FWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQDKF 62
Query: 69  PQISFDLVFEREFEISHNGTKGTVHFVGYRSPNIDHEDYT 108
           PQISFDLVF++EFE+SH+GTK  VHF+GY+SPNI+ +D+T
Sbjct: 63  PQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDFT 102
Query: 207 TPKKPEPINKKRPNESTSKTPVSGXXXXXXXXXXXTPQKTEEKKKGGHTATPHPAKKSGK 266
           TPKKPEPINKKRPNES SKTPVSG           TPQKTEEKKKGGHTATPHPAKK GK
Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGK 258
Query: 267 SPVNANQSPKAGGQSSGGN 285
           SPVNANQSPK+GGQSSGGN
Sbjct: 259 SPVNANQSPKSGGQSSGGN 277
Protein Sequence
(Fasta)		MFDCFLQCYL GIEVKPGKPT KVTPEEDSLV HISQASLDCK VKSGESVVLT VTVDGTKLVI 60
GTLSQEKFPQ ISFDLVFERE FEISHNGTKG TVHFVGYRSP NIDHEDYTSS EEEDVPEAVP 120
APVPAAVAVN GSAGAAASNV VKADSKPKAK PAEVKPAEVK PESEDDEDSS DEEDESADDD 180
DSEKGMDVDE DDSDDEEDES EEEEEETPKK PEPINKKRPN ESTSKTPVSG KKAKPAAAPA 240
ATPQKTEEKK KGGHTATPHP AKKSGKSPVN ANQSPKAGGQ SSGGNKKFNS GKQFGGSNNK 300
SKGKGRA 307
Nucleotide Sequence
(Fasta)		ATGTTTGATT GCTTTTTACA ATGTTATTTA GGAATTGAAG TGAAACCAGG GAAGCCTACT 60
AAGGTGACTC CTGAAGAAGA CAGCCTTGTC CACATTTCTC AGGCTTCACT TGACTGCAAA 120
GTGAAATCTG GAGAATCTGT GGTTTTGACT GTCACTGTTG ATGGGACTAA GCTTGTTATT 180
GGAACACTTT CACAAGAGAA GTTCCCTCAG ATTAGCTTTG ATTTGGTCTT TGAGAGAGAG 240
TTTGAGATTT CCCACAATGG TACCAAAGGA ACCGTCCACT TCGTTGGCTA CAGATCCCCC 300
AACATTGACC ATGAGGACTA CACTAGTTCA GAAGAGGAGG ATGTTCCTGA AGCTGTTCCT 360
GCCCCTGTTC CTGCTGCTGT TGCTGTCAAT GGAAGTGCTG GAGCAGCTGC TTCGAATGTT 420
GTTAAGGCTG ACTCAAAGCC AAAGGCCAAG CCTGCAGAAG TGAAGCCTGC AGAAGTGAAG 480
CCTGAATCAG AAGATGATGA GGATTCCTCT GACGAGGAAG ATGAGTCTGC TGATGATGAT 540
GACTCTGAGA AAGGAATGGA TGTTGACGAG GATGATTCAG ATGATGAGGA GGATGAATCA 600
GAGGAAGAAG AAGAAGAGAC TCCCAAGAAG CCCGAGCCAA TCAACAAGAA GAGGCCTAAT 660
GAATCTACAT CCAAAACACC TGTCTCGGGA AAGAAGGCAA AACCAGCAGC AGCACCAGCA 720
GCTACTCCTC AGAAGACAGA AGAGAAGAAG AAAGGAGGAC ACACAGCCAC ACCACACCCA 780
GCTAAGAAGA GTGGAAAGTC TCCTGTGAAT GCTAACCAGA GCCCCAAGGC TGGAGGTCAA 840
TCATCCGGTG GTAACAAGAA ATTCAATTCG GGCAAACAAT TTGGTGGTTC TAACAACAAG 900
AGCAAGGGCA AGGGTAGAGC TTAA 925
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Art-0126 AT5G22650.1 Arabidopsis thaliana 75 3e-41 166
WERAM-Brr-0103 Bra020209.1-P Brassica rapa 67 5e-33 138
WERAM-Bro-0028 Bo2g024240.1 Brassica oleracea 67 8e-33 138
WERAM-Viv-0052 VIT_08s0007g03940.t01 Vitis vinifera 58 1e-25 114
WERAM-Thc-0115 EOY33573 Theobroma cacao 53 5e-25 112
WERAM-Pot-0109 POPTR_0009s15160.1 Populus trichocarpa 52 2e-24 110
WERAM-Sol-0131 Solyc10g085560.1.1 Solanum lycopersicum 54 5e-24 108
WERAM-Sot-0024 PGSC0003DMT400021644 Solanum tuberosum 53 5e-24 108
WERAM-Orbr-0066 OB05G35770.1 Oryza brachyantha 49 5e-23 105
WERAM-Ors-0052 OS05T0597100-01 Oryza sativa 48 2e-22 103
WERAM-Ori-0055 BGIOSGA017430-PA Oryza indica 48 2e-22 103
WERAM-Hov-0097 MLOC_70585.1 Hordeum vulgare 56 9e-22 101
WERAM-Orl-0054 KN539082.1_FGP007 Oryza longistaminata 47 1e-21 101
WERAM-Prp-0078 EMJ06874 Prunus persica 49 1e-21 101
WERAM-Tru-0046 TRIUR3_21067-P1 Triticum urartu 46 5e-21 99.0
WERAM-Mua-0006 GSMUA_Achr10P04780_001 Musa acuminata 43 5e-21 99.0
WERAM-Sob-0059 Sb03g043350.1 Sorghum bicolor 47 9e-21 98.2
WERAM-Glm-0023 GLYMA03G34850.3 Glycine max 51 2e-20 97.1
WERAM-Aet-0097 EMT09079 Aegilops tauschii 48 6e-20 95.5
WERAM-Lep-0059 LPERR05G23920.1 Leersia perrieri 55 1e-19 94.7
WERAM-Sei-0085 Si022778m Setaria italica 49 2e-19 94.0
WERAM-Orp-0054 OPUNC05G25830.1 Oryza punctata 53 2e-19 93.6
WERAM-Orb-0056 OBART05G28290.1 Oryza barthii 53 2e-19 93.2
WERAM-Zem-0158 GRMZM5G898314_P01 Zea mays 47 6e-19 92.0
WERAM-Met-0051 KEH38943 Medicago truncatula 46 2e-18 90.1
WERAM-Php-0037 PP1S183_93V6.3 Physcomitrella patens 45 3e-17 86.7
WERAM-Brd-0043 BRADI2G14120.1 Brachypodium distachyon 48 1e-16 84.3
WERAM-Tra-0342 TRAES3BF048700110CFD_t1 Triticum aestivum 39 7e-14 75.1
WERAM-Org-0014 ORGLA01G0351500.1 Oryza glaberrima 38 2e-13 73.6
WERAM-Orr-0013 ORUFI01G44570.1 Oryza rufipogon 42 7e-13 72.0
WERAM-Orni-0013 ONIVA01G46280.1 Oryza nivara 42 8e-13 71.6
WERAM-Sem-0061 EFJ07202 Selaginella moellendorffii 37 1e-11 67.8
WERAM-Amt-0052 ERN12770 Amborella trichopoda 57 9e-11 65.1
WERAM-Orgl-0013 OGLUM01G45450.3 Oryza glumaepatula 32 5e-08 55.8
WERAM-Orm-0015 OMERI01G38270.1 Oryza meridionalis 30 3e-07 53.5
Created Date 25-Jun-2016