Populus trichocarpa      Ac_Reader      Bromodomain

※ Bromodomain family introduction

    Bromodomain: Bromodomains (BRDs) are protein interaction modules that exclusively recognize acetylation motifs. BRDs are evolutionarily conserved and present in diverse nuclear proteins comprising HATs (GCN5, PCAF), ATP-dependent chromatin-remodeling complexes (BAZ1B), helicases (SMARCA), methyltransferases (MLL, ASH1L), transcriptional coactivators (TRIM/TIF1, TAFs) transcriptional mediators (TAF1), nuclear-scaffolding proteins(PB1), and the BET family. Despite large sequence variations, all BRD modules share a conserved fold that comprises a left-handed bundle of four a helices, linked by loop regions of variablelength, which line the Kac binding site and determine binding specificity. (1)

Reference
1. P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J.P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Müller, T. Pawson,et al.Histone recognition and large-scale structural analysis of the human bromodomain family. Cell.2012;149(1):214-231. PMID: 22464331.



There are 38 genes.  Reviewed (0 or Unreviewed (38

No.StatusWERAM IDGene/Alias Name
1
WERAM-Pot-0002
POPTR_0001s05120g
2
WERAM-Pot-0005
POPTR_0001s12400g
3
WERAM-Pot-0008
POPTR_0001s23640g
4
WERAM-Pot-0011
POPTR_0001s29240g
5
WERAM-Pot-0013
POPTR_0001s36360g
6
WERAM-Pot-0014
POPTR_0001s36530g
7
WERAM-Pot-0017
POPTR_0001s38550g
8
WERAM-Pot-0022
POPTR_0002s01010g
9
WERAM-Pot-0023
POPTR_0002s04670g
10
WERAM-Pot-0029
POPTR_0002s16230g
11
WERAM-Pot-0044
POPTR_0004s03710g
12
WERAM-Pot-0050
POPTR_0004s21620g
13
WERAM-Pot-0053
POPTR_0004s23230g
14
WERAM-Pot-0054
POPTR_0004s23240g
15
WERAM-Pot-0070
POPTR_0005s23890g
16
WERAM-Pot-0071
POPTR_0005s27360g
17
WERAM-Pot-0075
POPTR_0006s11270g
18
WERAM-Pot-0083
POPTR_0007s02030g
19
WERAM-Pot-0085
POPTR_0007s03490g
20
WERAM-Pot-0094
POPTR_0008s04260g
21
WERAM-Pot-0101
POPTR_0009s02810g
22
WERAM-Pot-0106
POPTR_0009s08350g
23
WERAM-Pot-0111
POPTR_0009s16870g
24
WERAM-Pot-0117
POPTR_0010s15260g
25
WERAM-Pot-0119
POPTR_0010s22600g
26
WERAM-Pot-0123
POPTR_0011s03030g
27
WERAM-Pot-0125
POPTR_0011s09870g
28
WERAM-Pot-0133
POPTR_0012s09600g
29
WERAM-Pot-0139
POPTR_0013s12320g
30
WERAM-Pot-0141
POPTR_0014s08230g
31
WERAM-Pot-0151
POPTR_0015s10380g
32
WERAM-Pot-0156
POPTR_0016s14820g
33
WERAM-Pot-0158
POPTR_0017s059902g
34
WERAM-Pot-0159
POPTR_0017s05980g
35
WERAM-Pot-0160
POPTR_0017s05960g
36
WERAM-Pot-0162
POPTR_0017s07490g
37
WERAM-Pot-0170
POPTR_0019s12050g
38
WERAM-Pot-0171
POPTR_0019s15320g