Tag |
Content |
WERAM ID |
WERAM-Art-0105 |
Ensembl Protein ID |
AT4G20400.1 |
Uniprot Accession |
Q8GUI6; JMJ14_ARATH; F4JUW8; Q9SUN9 |
Genbank Protein ID |
NP_001031681.1; NP_193773.2 |
Protein Name |
Probable lysine-specific demethylase JMJ14 |
Genbank Nucleotide ID |
NM_001036604.1; NM_118159.2 |
Gene Name |
JMJ14 |
Ensembl Information |
|
Details |
Type |
Family |
Domain |
Substrates |
AA |
References (PMIDs) |
HDM |
JARID |
Jmjc |
H3K4me1/2/3 |
K |
26617990 |
|
Status |
Reviewed |
Classification |
Type |
Family |
E-value |
Score |
Start |
End |
HDM |
JARID |
7.50e-95 |
316.3 |
263 |
429 |
|
Organism |
Arabidopsis thaliana |
NCBI Taxa ID |
3702 |
Functional Description (View)Functional Description
Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a higher activity for H3K4me3 and H3K4me2 than H3K4me1. No activity on H3K9me3/2, H3K36me3/2 and H3K27me3/2. Represses FT and TSF expression to inhibit the floral transition. Binds around the transcription start site of the FT locus. Involved in the DRM2-mediated maintenance of DNA methylation, but not required for the de novo DNA methylation. Required for demethylating histone H3K4me3 at the target of RNA silencing. |
Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a higher activity for H3K4me3 and H3K4me2 than H3K4me1. No activity on H3K9me3/2, H3K36me3/2 and H3K27me3/2. Represses FT and TSF expression to inhibit the floral transition. Binds around the transcription start site of the FT locus. Involved in the DRM2-mediated maintenance of DNA methylation, but not required for the de novo DNA methylation. Required for demethylating histone H3K4me3 at the target of RNA silencing.
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Domain Profile |
HDM JARID
JARID.txt 1 eyaesgwnlnnlpvleesvlahinadisgvkvpwlyvgmcfsafcwhvedhwsysinylhfgepkvwygvpgsaaekleevlkklapelfesqpdllh 98 +y+++gwnlnnl++l +svla++++disgv vpwlyvgmcfs+fcwhvedh++ys+nylh+g+pkvwyg+pg++ae++e+v+kk++p+lfe+qpdllh AT4G20400.1 263 QYSQCGWNLNNLSRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPGNHAESFENVMKKRLPDLFEEQPDLLH 360 79************************************************************************************************ PP JARID.txt 99 qlvtllnpnilkeegvpvyrtnqkagefvitfprayhsgfnqgfnfaeavnfatvdwlaagreavesys 167 qlvt+l+p+ilkeegvpvyr++q++gef++tfp+ayhsgfn+gfn+aeavn+a+vdwl +g++ave ys AT4G20400.1 361 QLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYS 429 ******************************************************************996 PP
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Protein Sequence (Fasta) | MDQLASLAES VAMEEDSEKQ SIKGESSLEP DSTPSSPKIT ARWNPSEACR PLVDDAPIFY 60 PTNEDFDDPL GYIEKLRSKA ESYGICRIVP PVAWRPPCPL KEKKIWENSK FPTRIQFIDL 120 LQNREPIKKS TKTKKRKRRR ISKIGYTRRK RDSGCDTASS GSSDSEGKFG FQTGPDFTLE 180 EFQKYDEYFK ECYFQSEDHP GSKASENKKF KPKVKDLEGE YWRIVEQATD EVEVYYGADL 240 ETKKFGSGFP KYKPGYPISE ADQYSQCGWN LNNLSRLPGS VLAFESCDIS GVIVPWLYVG 300 MCFSTFCWHV EDHHLYSMNY LHTGDPKVWY GIPGNHAESF ENVMKKRLPD LFEEQPDLLH 360 QLVTQLSPRI LKEEGVPVYR AVQRSGEFIL TFPKAYHSGF NCGFNCAEAV NVAPVDWLVH 420 GQNAVEGYSK QRRKSSLSHD KLLLGAAMEA TYCLWELSLS KKKTPVIARW KRVCSEDGLL 480 TKAVKKRVQM EEERLNHLQD GFSLRKMEGD FDNKRERECF LCFYDLHMSA SSCKCSPNRF 540 ACLIHAKDLC SCESKDRYIL IRHTLDELWA LVRALEGDLD AIDLWASKCR DQYPSQHPRA 600 REYAYLKSAP CIKSRGSSKV QQREQNNLQL VSERLQSDLT SNKEVQLKQD GDSDVNRHGH 660 ESERNHVHGI TDKSAVTDVK LGVGGKFDEK KISVESQNPH SVSDVGCSEL AKKVDGCLGG 720 KDQNAATNRL SLSVELLSSG SLVVKKLWCS KQAIYPKGFK SRVKFLSVLD PTNLTNYISE 780 VLDAGLLGPL FRVSVEDYPT ENFSNVSAEK CWQMVTQRLK LEIIKKCDQP VSSLTSLQPL 840 ESINGLEMFG FLSPHVIKVV EALDPKHQLE EYWNQKAVKL FGAEPIKEGE KDDTEKGGAS 900 DPSLDRDTRL LRGLLKKATP EELVMMHGLL CGETRNTELK EELSTLVDKM EISP 954Protein Fasta Sequence
>AT4G20400.1|JMJ14|Arabidopsis thaliana MDQLASLAESVAMEEDSEKQSIKGESSLEPDSTPSSPKITARWNPSEACRPLVDDAPIFYPTNEDFDDPLGYIEKLRSKAESYGICRIVPPVAWRPPCPLKEKKIWENSKFPTRIQFIDLLQNREPIKKSTKTKKRKRRRISKIGYTRRKRDSGCDTASSGSSDSEGKFGFQTGPDFTLEEFQKYDEYFKECYFQSEDHPGSKASENKKFKPKVKDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPKYKPGYPISEADQYSQCGWNLNNLSRLPGSVLAFESCDISGVIVPWLYVGMCFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPGNHAESFENVMKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEATYCLWELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDFDNKRERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCSCESKDRYILIRHTLDELWALVRALEGDLDAIDLWASKCRDQYPSQHPRAREYAYLKSAPCIKSRGSSKVQQREQNNLQLVSERLQSDLTSNKEVQLKQDGDSDVNRHGHESERNHVHGITDKSAVTDVKLGVGGKFDEKKISVESQNPHSVSDVGCSELAKKVDGCLGGKDQNAATNRLSLSVELLSSGSLVVKKLWCSKQAIYPKGFKSRVKFLSVLDPTNLTNYISEVLDAGLLGPLFRVSVEDYPTENFSNVSAEKCWQMVTQRLKLEIIKKCDQPVSSLTSLQPLESINGLEMFGFLSPHVIKVVEALDPKHQLEEYWNQKAVKLFGAEPIKEGEKDDTEKGGASDPSLDRDTRLLRGLLKKATPEELVMMHGLLCGETRNTELKEELSTLVDKMEISP
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Nucleotide Sequence (Fasta) | AACTCATCAA AGAAGGAAAG AAAAAAAAAA ACCTCTTTCA CAGATATTTA ACCAAAAGGT 60 TTTAGATTTA TACTATACGT TACAAATAAA ATTCGAGAGT CAAATTCAAT CTTGGGAAAA 120 GCTTTTGTTC CGAATCTTGG CCCCTTCACG AAGGTCACGG GTTAAAAGTA TCGATCTTTG 180 TGAACTTAAT CTCACTGTAA ATGGATCAGC TTGCATCTCT AGCAGAGTCT GTGGCTATGG 240 AGGAAGATTC TGAGAAACAA TCGATTAAAG GAGAGAGTAG TCTTGAACCT GACTCTACTC 300 CTTCTAGTCC TAAAATAACT GCTAGGTGGA ATCCATCAGA AGCTTGCAGG CCTTTGGTTG 360 ATGACGCTCC CATCTTTTAT CCCACTAATG AGGATTTTGA TGATCCACTT GGTTACATAG 420 AGAAGTTGCG CTCTAAAGCA GAATCATATG GCATATGTCG AATTGTGCCG CCTGTTGCAT 480 GGAGGCCCCC TTGCCCTCTG AAGGAGAAAA AAATATGGGA GAATTCTAAA TTTCCCACCC 540 GGATTCAGTT CATTGACTTG CTTCAAAACC GAGAACCGAT TAAAAAATCT ACTAAAACCA 600 AGAAGAGAAA ACGGAGAAGA ATCTCTAAAA TTGGATACAC AAGAAGAAAA AGAGATTCAG 660 GCTGTGATAC GGCTTCCTCT GGCTCTAGTG ATAGTGAAGG AAAATTTGGT TTTCAGACTG 720 GGCCAGATTT TACCCTGGAA GAATTTCAGA AGTATGATGA ATACTTTAAG GAATGCTATT 780 TTCAGTCAGA GGATCATCCT GGTTCCAAAG CGTCTGAAAA TAAGAAATTT AAACCTAAGG 840 TTAAGGACCT TGAAGGTGAA TATTGGCGGA TAGTGGAGCA GGCAACTGAT GAAGTAGAGG 900 TGTACTATGG AGCTGACTTG GAAACAAAGA AATTTGGAAG TGGTTTCCCA AAGTATAAAC 960 CGGGGTATCC TATAAGTGAA GCAGATCAAT ACTCTCAATG TGGTTGGAAC CTAAATAATT 1020 TGTCCCGTCT GCCCGGATCA GTTCTAGCTT TTGAGAGCTG CGATATCTCA GGAGTCATTG 1080 TGCCATGGCT TTATGTTGGA ATGTGCTTTT CAACTTTTTG TTGGCATGTT GAAGATCATC 1140 ACCTTTATTC CATGAACTAC TTACACACAG GTGATCCAAA AGTTTGGTAT GGGATCCCTG 1200 GAAACCATGC TGAGTCTTTT GAAAATGTAA TGAAAAAGCG TCTTCCAGAT TTGTTTGAAG 1260 AACAGCCTGA CTTGCTACAT CAACTGGTCA CTCAGTTATC TCCAAGAATC TTAAAAGAGG 1320 AGGGAGTACC TGTCTATCGA GCTGTCCAGC GCAGTGGAGA ATTCATTCTA ACCTTCCCTA 1380 AGGCCTATCA TTCTGGGTTT AATTGTGGTT TCAACTGTGC GGAAGCAGTA AATGTTGCAC 1440 CAGTTGATTG GCTGGTTCAT GGACAGAATG CAGTGGAAGG CTATAGCAAG CAGCGGCGAA 1500 AGAGTTCATT GTCACATGAC AAGCTGCTTC TTGGAGCTGC TATGGAAGCT ACTTATTGCC 1560 TCTGGGAGCT TTCACTTTCA AAGAAGAAGA CTCCTGTGAT TGCGAGATGG AAAAGGGTTT 1620 GTAGTGAGGA TGGATTGCTT ACGAAGGCAG TCAAGAAGCG TGTGCAGATG GAAGAAGAAA 1680 GACTAAATCA CCTTCAAGAT GGTTTTAGCT TGCGAAAGAT GGAGGGTGAT TTCGACAATA 1740 AGAGAGAACG GGAGTGCTTC TTGTGCTTCT ATGATTTGCA TATGTCTGCT TCAAGCTGCA 1800 AGTGTTCCCC CAACCGGTTT GCATGTCTTA TCCACGCTAA GGATCTGTGT TCATGTGAAA 1860 GTAAGGATAG ATATATCCTA ATTCGCCACA CCTTGGATGA GTTATGGGCA CTGGTCAGAG 1920 CTCTAGAAGG GGATCTTGAT GCCATAGACC TATGGGCAAG TAAATGTCGT GACCAGTATC 1980 CTTCACAGCA TCCAAGAGCA AGAGAATATG CTTACCTCAA GTCTGCCCCA TGTATAAAGA 2040 GCCGTGGTTC ATCAAAAGTA CAGCAGCGAG AACAAAACAA TCTTCAGTTA GTGTCTGAAC 2100 GCTTACAAAG TGATCTAACC TCAAACAAGG AAGTTCAGTT GAAACAAGAT GGTGATTCAG 2160 ATGTAAATCG CCATGGTCAT GAAAGCGAAA GAAATCATGT ACATGGGATC ACTGATAAGT 2220 CAGCTGTCAC GGATGTAAAA CTTGGTGTGG GAGGTAAGTT TGATGAGAAG AAGATTTCGG 2280 TTGAATCTCA AAACCCACAT TCAGTTTCAG ATGTAGGGTG TAGCGAGCTG GCGAAGAAAG 2340 TGGATGGTTG TTTAGGAGGG AAGGACCAAA ATGCTGCAAC CAATAGGTTA AGTCTCTCTG 2400 TTGAGCTTTT GAGTTCTGGA TCTCTCGTTG TTAAAAAGCT GTGGTGCAGT AAACAGGCCA 2460 TATACCCAAA AGGGTTCAAG AGCCGTGTTA AGTTCTTAAG TGTGCTTGAC CCAACAAACC 2520 TAACCAACTA CATCTCAGAG GTTCTGGATG CAGGGCTTCT TGGTCCATTG TTCAGGGTCT 2580 CAGTAGAAGA TTACCCCACT GAGAATTTCT CGAATGTATC TGCTGAAAAG TGCTGGCAAA 2640 TGGTGACACA AAGGCTCAAA CTCGAAATCA TCAAGAAATG TGATCAACCA GTTAGCTCTT 2700 TGACCTCTTT ACAACCTTTG GAGAGTATAA ATGGGCTTGA AATGTTTGGA TTTCTCTCCC 2760 CGCACGTAAT TAAGGTGGTT GAGGCTCTTG ATCCAAAGCA TCAATTGGAG GAGTATTGGA 2820 ACCAAAAAGC AGTGAAACTG TTTGGTGCTG AACCAATAAA GGAAGGAGAA AAGGATGATA 2880 CAGAGAAAGG AGGGGCTTCA GATCCCTCTT TGGACCGGGA CACAAGGCTT CTGCGTGGAC 2940 TGTTGAAGAA GGCGACACCT GAAGAATTAG TAATGATGCA TGGACTTCTG TGTGGTGAGA 3000 CTCGCAACAC CGAGCTCAAG GAAGAGCTCT CTACTTTGGT TGATAAGATG GAGATAAGTC 3060 CTTAAGGAGG AGCAAGCAGA TAAACACACT AACACCCTTT GAAGTTGATT GTGTTTGTTG 3120 TTCCTTTGGT TATAAACTGT ATCAGTAGAG AAATCTAGAG AGGCAATACA AAAGTAGACA 3180 AAAGGGTTAC TTCGTTGACA TGTCTTTCCT TTTTACCAAA AAAGGGTTTA GGATTAATGA 3240 TTGTATTATA CTGTGTTGCA TTTGCAATGT ACCATTGTTC TCTATATTTC ATTTGCTTAT 3300 TTGTAACAGC TTTTATGAT
Nucleotide Fasta Sequence
>AT4G20400.1|JARID|Arabidopsis thaliana AACTCATCAAAGAAGGAAAGAAAAAAAAAAACCTCTTTCACAGATATTTAACCAAAAGGTTTTAGATTTATACTATACGTTACAAATAAAATTCGAGAGTCAAATTCAATCTTGGGAAAAGCTTTTGTTCCGAATCTTGGCCCCTTCACGAAGGTCACGGGTTAAAAGTATCGATCTTTGTGAACTTAATCTCACTGTAAATGGATCAGCTTGCATCTCTAGCAGAGTCTGTGGCTATGGAGGAAGATTCTGAGAAACAATCGATTAAAGGAGAGAGTAGTCTTGAACCTGACTCTACTCCTTCTAGTCCTAAAATAACTGCTAGGTGGAATCCATCAGAAGCTTGCAGGCCTTTGGTTGATGACGCTCCCATCTTTTATCCCACTAATGAGGATTTTGATGATCCACTTGGTTACATAGAGAAGTTGCGCTCTAAAGCAGAATCATATGGCATATGTCGAATTGTGCCGCCTGTTGCATGGAGGCCCCCTTGCCCTCTGAAGGAGAAAAAAATATGGGAGAATTCTAAATTTCCCACCCGGATTCAGTTCATTGACTTGCTTCAAAACCGAGAACCGATTAAAAAATCTACTAAAACCAAGAAGAGAAAACGGAGAAGAATCTCTAAAATTGGATACACAAGAAGAAAAAGAGATTCAGGCTGTGATACGGCTTCCTCTGGCTCTAGTGATAGTGAAGGAAAATTTGGTTTTCAGACTGGGCCAGATTTTACCCTGGAAGAATTTCAGAAGTATGATGAATACTTTAAGGAATGCTATTTTCAGTCAGAGGATCATCCTGGTTCCAAAGCGTCTGAAAATAAGAAATTTAAACCTAAGGTTAAGGACCTTGAAGGTGAATATTGGCGGATAGTGGAGCAGGCAACTGATGAAGTAGAGGTGTACTATGGAGCTGACTTGGAAACAAAGAAATTTGGAAGTGGTTTCCCAAAGTATAAACCGGGGTATCCTATAAGTGAAGCAGATCAATACTCTCAATGTGGTTGGAACCTAAATAATTTGTCCCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGCATGTTGAAGATCATCACCTTTATTCCATGAACTACTTACACACAGGTGATCCAAAAGTTTGGTATGGGATCCCTGGAAACCATGCTGAGTCTTTTGAAAATGTAATGAAAAAGCGTCTTCCAGATTTGTTTGAAGAACAGCCTGACTTGCTACATCAACTGGTCACTCAGTTATCTCCAAGAATCTTAAAAGAGGAGGGAGTACCTGTCTATCGAGCTGTCCAGCGCAGTGGAGAATTCATTCTAACCTTCCCTAAGGCCTATCATTCTGGGTTTAATTGTGGTTTCAACTGTGCGGAAGCAGTAAATGTTGCACCAGTTGATTGGCTGGTTCATGGACAGAATGCAGTGGAAGGCTATAGCAAGCAGCGGCGAAAGAGTTCATTGTCACATGACAAGCTGCTTCTTGGAGCTGCTATGGAAGCTACTTATTGCCTCTGGGAGCTTTCACTTTCAAAGAAGAAGACTCCTGTGATTGCGAGATGGAAAAGGGTTTGTAGTGAGGATGGATTGCTTACGAAGGCAGTCAAGAAGCGTGTGCAGATGGAAGAAGAAAGACTAAATCACCTTCAAGATGGTTTTAGCTTGCGAAAGATGGAGGGTGATTTCGACAATAAGAGAGAACGGGAGTGCTTCTTGTGCTTCTATGATTTGCATATGTCTGCTTCAAGCTGCAAGTGTTCCCCCAACCGGTTTGCATGTCTTATCCACGCTAAGGATCTGTGTTCATGTGAAAGTAAGGATAGATATATCCTAATTCGCCACACCTTGGATGAGTTATGGGCACTGGTCAGAGCTCTAGAAGGGGATCTTGATGCCATAGACCTATGGGCAAGTAAATGTCGTGACCAGTATCCTTCACAGCATCCAAGAGCAAGAGAATATGCTTACCTCAAGTCTGCCCCATGTATAAAGAGCCGTGGTTCATCAAAAGTACAGCAGCGAGAACAAAACAATCTTCAGTTAGTGTCTGAACGCTTACAAAGTGATCTAACCTCAAACAAGGAAGTTCAGTTGAAACAAGATGGTGATTCAGATGTAAATCGCCATGGTCATGAAAGCGAAAGAAATCATGTACATGGGATCACTGATAAGTCAGCTGTCACGGATGTAAAACTTGGTGTGGGAGGTAAGTTTGATGAGAAGAAGATTTCGGTTGAATCTCAAAACCCACATTCAGTTTCAGATGTAGGGTGTAGCGAGCTGGCGAAGAAAGTGGATGGTTGTTTAGGAGGGAAGGACCAAAATGCTGCAACCAATAGGTTAAGTCTCTCTGTTGAGCTTTTGAGTTCTGGATCTCTCGTTGTTAAAAAGCTGTGGTGCAGTAAACAGGCCATATACCCAAAAGGGTTCAAGAGCCGTGTTAAGTTCTTAAGTGTGCTTGACCCAACAAACCTAACCAACTACATCTCAGAGGTTCTGGATGCAGGGCTTCTTGGTCCATTGTTCAGGGTCTCAGTAGAAGATTACCCCACTGAGAATTTCTCGAATGTATCTGCTGAAAAGTGCTGGCAAATGGTGACACAAAGGCTCAAACTCGAAATCATCAAGAAATGTGATCAACCAGTTAGCTCTTTGACCTCTTTACAACCTTTGGAGAGTATAAATGGGCTTGAAATGTTTGGATTTCTCTCCCCGCACGTAATTAAGGTGGTTGAGGCTCTTGATCCAAAGCATCAATTGGAGGAGTATTGGAACCAAAAAGCAGTGAAACTGTTTGGTGCTGAACCAATAAAGGAAGGAGAAAAGGATGATACAGAGAAAGGAGGGGCTTCAGATCCCTCTTTGGACCGGGACACAAGGCTTCTGCGTGGACTGTTGAAGAAGGCGACACCTGAAGAATTAGTAATGATGCATGGACTTCTGTGTGGTGAGACTCGCAACACCGAGCTCAAGGAAGAGCTCTCTACTTTGGTTGATAAGATGGAGATAAGTCCTTAAGGAGGAGCAAGCAGATAAACACACTAACACCCTTTGAAGTTGATTGTGTTTGTTGTTCCTTTGGTTATAAACTGTATCAGTAGAGAAATCTAGAGAGGCAATACAAAAGTAGACAAAAGGGTTACTTCGTTGACATGTCTTTCCTTTTTACCAAAAAAGGGTTTAGGATTAATGATTGTATTATACTGTGTTGCATTTGCAATGTACCATTGTTCTCTATATTTCATTTGCTTATTTGTAACAGCTTTTATGAT
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Sequence Source |
Ensembl |
Keyword |
KW-0025--Alternative splicing KW-0156--Chromatin regulator KW-0181--Complete proteome KW-0223--Dioxygenase KW-0408--Iron KW-0479--Metal-binding KW-0539--Nucleus KW-0560--Oxidoreductase KW-1185--Reference proteome KW-0804--Transcription KW-0805--Transcription regulation --
|
Interpro |
IPR003889--FYrich_C IPR003888--FYrich_N IPR003347--JmjC_dom IPR003349--JmjN IPR004198--Znf_C5HC2
|
PROSITE |
PS51543--FYRC PS51542--FYRN PS51184--JMJC PS51183--JMJN
|
Pfam |
PF05965--FYRC PF05964--FYRN PF02373--JmjC PF02375--JmjN PF02928--zf-C5HC2
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Gene Ontology |
GO:0005654--C:nucleoplasm GO:0051213--F:dioxygenase activity GO:0032453--F:histone demethylase activity (H3-K4 specific) GO:0046872--F:metal ion binding GO:0003700--F:transcription factor activity, sequence-specific DNA binding GO:0000976--F:transcription regulatory region sequence-specific DNA binding GO:0034720--P:histone H3-K4 demethylation GO:0010216--P:maintenance of DNA methylation GO:0009910--P:negative regulation of flower development GO:0048579--P:negative regulation of long-day photoperiodism, flowering GO:0045892--P:negative regulation of transcription, DNA-templated GO:0048573--P:photoperiodism, flowering GO:0006355--P:regulation of transcription, DNA-templated GO:0006351--P:transcription, DNA-templated
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Orthology |
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Created Date |
25-Jun-2016 |