WERAM Information

Tag Content
WERAM ID WERAM-Art-0076
Ensembl Protein ID AT3G20810.2
Uniprot Accession Q8RWR1; JMJ30_ARATH; Q9LT40
Genbank Protein ID NP_566667.1; NP_850617.1
Protein Name Putative lysine-specific demethylase JMJD5
Genbank Nucleotide ID NM_112972.3; NM_180286.1
Gene Name JMJ30;JMJD5
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G20810 AT3G20810.2 AT3G20810.2
AT3G20810 AT3G20810.1 AT3G20810.1
AT3G20810 AT3G20810.3 AT3G20810.3
Details
Type Family Domain Substrates AA References (PMIDs)
HDM JmjC_only Jmjc H3K36 K 21358285; 21115819
Status Reviewed
Classification
Type Family E-value Score Start End
HDM JmjC_only 1.20e-51 175.1 276 428
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)		 Putative histone demethylase that acts within the central clock. Works in concert with TOC1 to promote the morning-phased clock genes CCA1 and LHY which function as components of the central oscillator.
Domain Profile
  HDM JmjC_only
  JmjC_only.txt   2 ledylvpktfsdqlwqlkeelsepfyclvgsn.......wfltGpassgfplHvddieaflvqveGrkrwrlyepsepaellk.....lasdeqvk 85 
                    +++yl++++++dq+++l++++++p+yc+vg +       wf  Gpa++++plH+d+++++l+qv G+k++rly++  ++el++     l++++qv+
    AT3G20810.2 276 EPTYLAQHPLFDQINELRDDICIPDYCFVGGGelqslnaWF--GPAGTVTPLHHDPHHNILAQVVGKKYIRLYPSFLQDELYPysetmLCNSSQVD 369
                    789**************************************..***************************************************** PP
  JmjC_only.txt  86 qedllltkftliaprplletvlepgellyiprgtwHqalsldvtlsvsqnfssetflen 144
                     +++++t+f+++++ ++++++le+ge+lyip+++wH+++sl+++lsvs+++s+e+++++
    AT3G20810.2 370 LDNIDETEFPKAMELEFMDCILEEGEMLYIPPKWWHYVRSLTMSLSVSFWWSNEAESSS 428
                    ****************************************************9998875 PP
Protein Sequence
(Fasta)		MSGATTASSG DHNNLRLPTP TLDAESQTLL QSISAEGGYA YARMAVLAVA GDQSAAEAAR 60
DMAWEQLHSG PWHSVLPVWR DAYSMACLHV AKIHFAAGEF GEALGALDMG LIMGGMLLRK 120
DLHDSVLLVS SEARKMTKSL EEASGDFKGE RLVPEVPVDV NEVRHVLANL QLLVLKILPC 180
RSLTCKRVEK RSGLSLEGFL RDYYLPGTPV VITNSMAHWP ARTKWNHLDY LNAVAGNRTV 240
PVEVGKNYLC SDWKQELVTF SKFLERMRTN KSSPMEPTYL AQHPLFDQIN ELRDDICIPD 300
YCFVGGGELQ SLNAWFGPAG TVTPLHHDPH HNILAQVVGK KYIRLYPSFL QDELYPYSET 360
MLCNSSQVDL DNIDETEFPK AMELEFMDCI LEEGEMLYIP PKWWHYVRSL TMSLSVSFWW 420
SNEAESSSS 429
Nucleotide Sequence
(Fasta)		ATCACTTCAA AATATCTTTC TTTCCCTTTC CACTTTTTCG CTTACACTTT CCCCAACTCA 60
TCATCACTCT AAAATATCTC CCACCACATA CCACTTAACC CGACCCGACC CGACCGGAAA 120
ACCCGACCCG ATCCATCCCA ATGTCAGGAG CTACCACCGC TTCCTCCGGA GACCACAACA 180
ACCTCCGTCT CCCAACTCCG ACGCTTGACG CCGAATCGCA AACTCTGCTG CAATCGATTT 240
CTGCTGAAGG GGGTTACGCT TATGCTCGCA TGGCGGTGTT AGCGGTGGCC GGTGACCAAA 300
GCGCGGCGGA GGCGGCGCGT GATATGGCTT GGGAGCAACT TCACTCTGGT CCGTGGCACT 360
CGGTTCTCCC CGTTTGGCGC GACGCTTACT CAATGGCTTG TCTCCACGTA GCTAAAATCC 420
ATTTCGCCGC CGGCGAGTTT GGTGAGGCGC TTGGTGCGCT TGATATGGGT CTTATCATGG 480
GAGGTATGCT TCTCCGCAAG GATCTTCATG ATTCTGTTTT GTTGGTCTCC TCTGAAGCTC 540
GTAAGATGAC GAAGAGTCTT GAAGAAGCTT CTGGAGATTT CAAAGGTGAG AGATTGGTCC 600
CGGAAGTTCC CGTCGACGTC AATGAGGTGA GACATGTTTT GGCTAATCTA CAATTACTTG 660
TCCTTAAGAT TCTACCTTGC AGGTCTTTAA CTTGTAAAAG AGTAGAGAAG AGGTCTGGTT 720
TATCTTTGGA GGGGTTTCTG CGTGATTATT ATCTGCCAGG TACACCAGTT GTTATAACCA 780
ATTCTATGGC TCATTGGCCA GCCAGGACCA AGTGGAATCA CTTGGACTAC CTCAATGCTG 840
TTGCTGGTAA CCGCACCGTT CCCGTGGAGG TGGGGAAAAA CTATTTGTGT TCTGATTGGA 900
AGCAAGAGCT TGTGACATTT TCTAAGTTCC TTGAACGGAT GCGGACCAAT AAATCGTCTC 960
CAATGGAGCC TACTTATCTT GCCCAGCATC CTTTGTTTGA TCAGATAAAT GAACTGAGAG 1020
ATGATATATG TATTCCTGAT TACTGTTTTG TCGGTGGTGG GGAACTCCAA TCACTTAATG 1080
CATGGTTTGG CCCGGCTGGG ACAGTTACTC CGTTACACCA TGATCCACAT CATAATATAC 1140
TTGCTCAGGT TGTTGGCAAG AAGTATATAA GGCTTTACCC ATCCTTCCTG CAAGACGAAC 1200
TTTACCCTTA CTCTGAGACA ATGCTCTGCA ACTCTAGTCA GGTTGATCTA GACAATATCG 1260
ACGAAACCGA GTTCCCAAAG GCCATGGAGT TGGAGTTTAT GGATTGTATT CTAGAAGAAG 1320
GTGAAATGTT GTACATCCCT CCCAAATGGT GGCACTATGT CAGGTCCTTA ACAATGAGTC 1380
TCTCGGTTAG CTTCTGGTGG AGCAATGAAG CAGAATCTTC TAGCTCGTAG CGAATGGATT 1440
TATTTTTAAT CTCTGTTTCA GGTTCTAAGT TCACGTTGTG TCTTTATGTA AGAAGAAACT 1500
ATGTAGAGAA GAAAACAACT GCTCCGAGCA TGAAGATGTT TGTTTGGTTT ACGTCTATGT 1560
TGTAAAAGAC AATTGAGAGC TCTTGGTACA GACATTTTTT AGGTATTGGT AATGTTTGTC 1620
TTTGTTTCAA GTAAGAAATG GTTTAATCAA AATCTAATCT TCAAT 1666
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0223--Dioxygenase
KW-0408--Iron
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0560--Oxidoreductase
KW-1185--Reference proteome
--
Interpro

IPR003347--JmjC_dom
PROSITE

PS51184--JMJC
Pfam
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0051213--F:dioxygenase activity
GO:0046975--F:histone methyltransferase activity (H3-K36 specific)
GO:0046872--F:metal ion binding
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0007623--P:circadian rhythm
GO:0070544--P:histone H3-K36 demethylation
GO:0010452--P:histone H3-K36 methylation
GO:0042752--P:regulation of circadian rhythm
GO:0006355--P:regulation of transcription, DNA-templated
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0063 fgenesh2_kg.3__ 2308__ AT3G20810.2 Arabidopsis lyrata 94 0.0 796
WERAM-Bro-0097 Bo5g106210.1 Brassica oleracea 87 0.0 719
WERAM-Brr-0177 Bra035742.1-P Brassica rapa 87 0.0 717
WERAM-Met-0103 KEH30262 Medicago truncatula 70 6e-159 557
WERAM-Prp-0114 EMJ09022 Prunus persica 69 1e-155 546
WERAM-Viv-0032 VIT_06s0004g01630.t01 Vitis vinifera 69 2e-155 546
WERAM-Pot-0003 POPTR_0001s05390.1 Populus trichocarpa 68 1e-151 533
WERAM-Thc-0109 EOY32544 Theobroma cacao 66 6e-150 528
WERAM-Sot-0067 PGSC0003DMT400055008 Solanum tuberosum 67 3e-148 522
WERAM-Glm-0128 GLYMA11G13911.1 Glycine max 65 5e-145 511
WERAM-Mua-0127 GSMUA_Achr8P25590_001 Musa acuminata 59 3e-126 449
WERAM-Sob-0030 Sb02g028370.1 Sorghum bicolor 57 4e-125 445
WERAM-Zem-0040 GRMZM2G052908_P01 Zea mays 57 8e-122 434
WERAM-Ors-0093 OS09T0489200-00 Oryza sativa 55 5e-121 431
WERAM-Orgl-0101 OGLUM09G15350.1 Oryza glumaepatula 55 5e-121 431
WERAM-Lep-0101 LPERR09G10850.1 Leersia perrieri 58 2e-119 426
WERAM-Ori-0103 BGIOSGA029547-PA Oryza indica 52 1e-118 423
WERAM-Sei-0115 Si029989m Setaria italica 55 3e-118 422
WERAM-Brd-0110 BRADI4G33727.1 Brachypodium distachyon 60 1e-114 410
WERAM-Php-0008 PP1S105_124V6.1 Physcomitrella patens 53 8e-107 384
WERAM-Tru-0087 TRIUR3_31518-P1 Triticum urartu 65 8e-102 367
WERAM-Tra-0293 Traes_7AS_08AEBE00A.2 Triticum aestivum 65 1e-101 367
WERAM-Orr-0098 ORUFI08G22350.2 Oryza rufipogon 51 2e-100 363
WERAM-Sem-0027 EFJ27560 Selaginella moellendorffii 49 2e-97 353
WERAM-Orbr-0102 OB08G26850.1 Oryza brachyantha 65 2e-97 353
WERAM-Hov-0087 MLOC_65982.1 Hordeum vulgare 67 1e-80 297
WERAM-Orni-0094 ONIVA08G22510.3 Oryza nivara 59 1e-75 281
WERAM-Cap-0027 ENSCPOP00000002073.2 Cavia porcellus 43 3e-72 269
WERAM-Tut-0101 ENSTTRP00000008521.1 Tursiops truncatus 41 4e-70 262
WERAM-Aim-0052 ENSAMEP00000004259.1 Ailuropoda melanoleuca 40 2e-69 260
WERAM-Mup-0147 ENSMPUP00000012892.1 Mustela putorius furo 40 4e-69 259
WERAM-Mum-0112 ENSMUSP00000033010.2 Mus musculus 39 7e-69 258
WERAM-Ran-0101 ENSRNOP00000020388.4 Rattus norvegicus 39 1e-68 258
WERAM-Prc-0093 ENSPCAP00000008339.1 Procavia capensis 39 1e-68 258
WERAM-Sah-0112 ENSSHAP00000012011.1 Sarcophilus harrisii 51 2e-68 257
WERAM-Loa-0169 ENSLAFP00000015542.3 Loxodonta africana 38 2e-68 257
WERAM-Paa-0062 ENSPANP00000012432.1 Papio anubis 39 6e-68 255
WERAM-Hos-0166 ENSP00000286096.4 Homo sapiens 41 8e-68 254
WERAM-Gog-0074 ENSGGOP00000006358.2 Gorilla gorilla 40 9e-68 254
WERAM-Bot-0170 ENSBTAP00000026023.5 Bos taurus 40 9e-68 254
WERAM-Pat-0060 ENSPTRP00000013519.3 Pan troglodytes 40 1e-67 254
WERAM-Tar-0148 ENSTRUP00000031961.1 Takifugu rubripes 40 1e-67 254
WERAM-Ova-0201 ENSOARP00000020136.1 Ovis aries 40 1e-67 254
WERAM-Nol-0122 ENSNLEP00000014249.2 Nomascus leucogenys 39 1e-67 254
WERAM-Poa-0063 ENSPPYP00000008151.1 Pongo abelii 41 1e-67 254
WERAM-Otg-0122 ENSOGAP00000010606.2 Otolemur garnettii 40 2e-67 253
WERAM-Caf-0187 ENSCAFP00000025742.3 Canis familiaris 40 3e-67 253
WERAM-Mam-0145 ENSMMUP00000020806.2 Macaca mulatta 39 3e-67 253
WERAM-Ict-0169 ENSSTOP00000022768.1 Ictidomys tridecemlineatus 40 5e-67 252
WERAM-Orn-0019 ENSONIP00000001749.1 Oreochromis niloticus 42 6e-67 252
WERAM-Gaa-0145 ENSGACP00000018511.1 Gasterosteus aculeatus 40 1e-66 251
WERAM-Dio-0095 ENSDORP00000009624.1 Dipodomys ordii 41 1e-66 251
WERAM-Xet-0135 ENSXETP00000047024.2 Xenopus tropicalis 49 1e-66 251
WERAM-Tag-0119 ENSTGUP00000009777.1 Taeniopygia guttata 41 1e-66 250
WERAM-Chs-0075 ENSCSAP00000002744.1 Chlorocebus sabaeus 38 2e-66 250
WERAM-Mod-0137 ENSMODP00000019296.2 Monodelphis domestica 50 4e-66 249
WERAM-Tas-0011 ENSTSYP00000001358.1 Tarsius syrichta 52 9e-66 248
WERAM-Ten-0217 ENSTNIP00000021769.1 Tetraodon nigroviridis 40 1e-65 248
WERAM-Ptv-0038 ENSPVAP00000004151.1 Pteropus vampyrus 52 2e-65 247
WERAM-Dan-0154 ENSDNOP00000024517.1 Dasypus novemcinctus 52 4e-65 246
WERAM-Lac-0048 ENSLACP00000007034.1 Latimeria chalumnae 52 5e-65 245
WERAM-Myl-0091 ENSMLUP00000007518.2 Myotis lucifugus 50 8e-65 245
WERAM-Sus-0055 ENSSSCP00000008347.2 Sus scrofa 51 1e-64 244
WERAM-Pof-0141 ENSPFOP00000011752.1 Poecilia formosa 39 1e-64 244
WERAM-Pes-0097 ENSPSIP00000011968.1 Pelodiscus sinensis 39 2e-64 243
WERAM-Tub-0083 ENSTBEP00000009713.1 Tupaia belangeri 51 4e-64 242
WERAM-Fec-0011 ENSFCAP00000000891.3 Felis catus 51 6e-64 242
WERAM-Eqc-0005 ENSECAP00000000474.1 Equus caballus 50 9e-64 241
WERAM-Gaga-0066 ENSGALP00000010168.4 Gallus gallus 51 1e-63 241
WERAM-Xim-0107 ENSXMAP00000009477.1 Xiphophorus maculatus 39 6e-63 238
WERAM-Fia-0169 ENSFALP00000014680.1 Ficedula albicollis 51 8e-63 238
WERAM-Gam-0047 ENSGMOP00000004939.1 Gadus morhua 37 2e-62 237
WERAM-Orla-0050 ENSORLP00000006206.1 Oryzias latipes 50 4e-62 236
WERAM-Anc-0031 ENSACAP00000003528.2 Anolis carolinensis 50 5e-60 229
WERAM-Dar-0218 ENSDARP00000133489.1 Danio rerio 49 1e-59 227
WERAM-Leo-0023 ENSLOCP00000004737.1 Lepisosteus oculatus 49 1e-59 227
WERAM-Anp-0138 ENSAPLP00000014931.1 Anas platyrhynchos 49 2e-58 224
WERAM-Chh-0005 ENSCHOP00000000442.1 Choloepus hoffmanni 46 5e-57 219
WERAM-Ere-0039 ENSEEUP00000002911.1 Erinaceus europaeus 47 5e-57 219
WERAM-Caj-0217 ENSCJAP00000038116.2 Callithrix jacchus 49 1e-51 201
WERAM-Mae-0065 ENSMEUP00000005887.1 Macropus eugenii 42 4e-49 192
WERAM-Mim-0094 ENSMICP00000008672.1 Microcebus murinus 45 6e-49 192
Created Date 25-Jun-2016