| Tag |
Content |
| WERAM ID |
WERAM-Brr-0004 |
| Ensembl Protein ID |
Bra000935.1-P |
| Gene Name |
|
| Ensembl Information |
|
| Status |
Unreviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HDM |
JHDM2 |
4.10e-64 |
217.1 |
43 |
542 |
|
| Organism |
Brassica rapa |
| Domain Profile |
HDM JHDM2
JHDM2.txt 115 irellekvskeqgaevppdhdpihdqswyld 145
+++l+ + + + + +ppd+d h+ s +
Bra000935.1-P 43 VQKLITNAEEVTLQFQPPDVDIAHECSSCTS 73
5666666666666677888888887766555 PP
JHDM2.txt 5 rdgklNLasklpknfvrpdlgPklynAyGlateedrklgttnlhldvsdavnilvy...vgilkkkwaeedlkellksi..eeeeldevtrkrvqd 95
+ g +NLa++lpk +++pdlgPk+y AyG+ +e d ++++t+lh+dvsdavn+l++ v+i+ + + ++++l k+ ++ e+ +k +++
Bra000935.1-P 226 KSGIFNLATRLPKGSLKPDLGPKTYIAYGFPEELDGGDSVTKLHCDVSDAVNVLTHtakVDIPPWQYKLVKKAQLRKQHvgQQTEASASENKSLKE 321
56889***************************************************9998888777666665566555411333565666677777 PP
JHDM2.txt 96 pkekpgal 103
++++++al
Bra000935.1-P 322 VENEEAAL 329
77776665 PP
JHDM2.txt 91 krvqdpkekpgalWhifaakdaekirellekvskeqga....evppdhdpihdqswyldrklrkrLfeeyGvegwtlvQklgdavlipagapHqvq 182
++ + ++ ga+W+if+++d++k+ e+l+++++e+++ +v+++ +pihdqs++l+++++k+L+ee+ +e+wt+ Q lg+av+ipag+pHqv+
Bra000935.1-P 418 ANESSKAVRGGAVWDIFRREDVPKLIEYLKRHKHEFRHfynePVKSVIHPIHDQSMFLSESQKKQLKEEFDIEPWTFEQHLGEAVFIPAGCPHQVR 513
33344556789**************************99988888899************************************************ PP
JHDM2.txt 183 nlkscvkvaedFvsPEnvkecfrltkeyr 211
n++sc+kva Fv PE v+ec+rlt+e+r
Bra000935.1-P 514 NIQSCIKVALGFVAPESVEECLRLTQEFR 542
***************************98 PP
|
Protein Sequence
(Fasta) | MGREMQKGPL IPKPVFQICP PTESGSCGTS TLELRRLCEC DWVQKLITNA EEVTLQFQPP 60
DVDIAHECSS CTSIISRQAA FRKTGHDNFL YCPNAVDLAE GDIVHFQSHW MKAEPVIVRN 120
VLDKTSGLSW DPMVMWRGCR EMNPKVKCKG DGKSVRVLDC FDWCEVELNI HQFFQGYLKG 180
RMDPKGMPVM LKLKDWPPST LFEERLPRHN SEFISALPFS VYTDAKSGIF NLATRLPKGS 240
LKPDLGPKTY IAYGFPEELD GGDSVTKLHC DVSDAVNVLT HTAKVDIPPW QYKLVKKAQL 300
RKQHVGQQTE ASASENKSLK EVENEEAALK NCDGLVREES LKNKAGNKEP SNNSSKRSSS 360
QEGKCITAME SDHDPKEAAG LIPQKNVTMT NESIADENHN DVCLKTERLS SEETNGNANE 420
SSKAVRGGAV WDIFRREDVP KLIEYLKRHK HEFRHFYNEP VKSVIHPIHD QSMFLSESQK 480
KQLKEEFDIE PWTFEQHLGE AVFIPAGCPH QVRNIQSCIK VALGFVAPES VEECLRLTQE 540
FRRLPKDHRT NEDKLEIKEI VIHAASSAMR EAKGLI 576Protein Fasta Sequence
>Bra000935.1-P|JHDM2|Brassica rapa
MGREMQKGPLIPKPVFQICPPTESGSCGTSTLELRRLCECDWVQKLITNAEEVTLQFQPPDVDIAHECSSCTSIISRQAAFRKTGHDNFLYCPNAVDLAEGDIVHFQSHWMKAEPVIVRNVLDKTSGLSWDPMVMWRGCREMNPKVKCKGDGKSVRVLDCFDWCEVELNIHQFFQGYLKGRMDPKGMPVMLKLKDWPPSTLFEERLPRHNSEFISALPFSVYTDAKSGIFNLATRLPKGSLKPDLGPKTYIAYGFPEELDGGDSVTKLHCDVSDAVNVLTHTAKVDIPPWQYKLVKKAQLRKQHVGQQTEASASENKSLKEVENEEAALKNCDGLVREESLKNKAGNKEPSNNSSKRSSSQEGKCITAMESDHDPKEAAGLIPQKNVTMTNESIADENHNDVCLKTERLSSEETNGNANESSKAVRGGAVWDIFRREDVPKLIEYLKRHKHEFRHFYNEPVKSVIHPIHDQSMFLSESQKKQLKEEFDIEPWTFEQHLGEAVFIPAGCPHQVRNIQSCIKVALGFVAPESVEECLRLTQEFRRLPKDHRTNEDKLEIKEIVIHAASSAMREAKGLI |
Nucleotide Sequence
(Fasta) | ATGGGAAGAG AAATGCAGAA GGGACCGTTA ATTCCAAAGC CTGTGTTCCA GATATGCCCA 60
CCAACAGAAT CTGGTAGTTG TGGCACTTCA ACACTGGAGT TGAGACGCTT ATGCGAATGT 120
GATTGGGTTC AAAAACTGAT AACCAATGCA GAGGAAGTTA CTCTCCAGTT TCAGCCACCA 180
GATGTGGATA TTGCTCATGA ATGTTCCTCA TGCACTTCCA TCATCAGTAG GCAGGCGGCG 240
TTTAGGAAGA CTGGGCATGA TAACTTTTTG TACTGCCCAA ATGCTGTTGA TCTGGCTGAA 300
GGCGATATTG TTCATTTTCA GTCGCATTGG ATGAAGGCAG AACCTGTGAT TGTCAGAAAT 360
GTTCTCGATA AGACATCTGG ACTAAGTTGG GATCCAATGG TTATGTGGAG GGGTTGCAGG 420
GAAATGAATC CAAAAGTTAA ATGCAAAGGA GATGGGAAAA GCGTGAGAGT TTTAGACTGT 480
TTTGACTGGT GTGAGGTTGA ATTAAATATT CATCAGTTTT TCCAAGGATA CTTGAAAGGC 540
CGCATGGATC CCAAGGGTAT GCCAGTAATG TTGAAGTTAA AGGATTGGCC TCCATCAACT 600
TTATTTGAAG AGCGCCTTCC AAGGCATAAC TCCGAGTTTA TTTCTGCGTT ACCTTTCTCT 660
GTGTACACTG ACGCAAAGTC AGGTATCTTC AATCTCGCAA CAAGACTCCC AAAAGGATCC 720
TTGAAGCCAG ATCTTGGACC CAAGACGTAC ATTGCGTACG GTTTCCCTGA AGAGCTTGAT 780
GGAGGAGATT CTGTGACAAA GCTACATTGT GATGTTTCTG ACGCTGTCAA TGTGCTGACA 840
CACACAGCTA AAGTGGATAT ACCTCCCTGG CAATACAAAC TTGTAAAAAA AGCACAGTTG 900
CGTAAACAAC ACGTTGGTCA ACAGACAGAA GCCAGTGCAA GTGAAAACAA GTCACTGAAA 960
GAAGTAGAGA ATGAGGAAGC TGCTTTAAAG AATTGTGATG GTCTTGTGAG AGAAGAGAGT 1020
TTAAAGAACA AGGCAGGTAA CAAGGAACCG TCGAACAACA GTTCGAAACG GTCCAGCTCA 1080
CAAGAAGGTA AATGCATTAC TGCTATGGAG TCAGATCATG ATCCAAAGGA GGCTGCGGGG 1140
TTAATTCCTC AGAAGAATGT AACGATGACA AACGAATCCA TTGCTGACGA GAATCATAAT 1200
GACGTCTGTT TGAAGACAGA GAGATTATCT TCCGAAGAAA CTAATGGCAA TGCCAATGAG 1260
AGTTCAAAGG CTGTGCGGGG TGGTGCTGTC TGGGACATCT TCCGAAGAGA GGATGTTCCA 1320
AAACTTATCG AGTATTTGAA AAGACACAAG CATGAGTTTC GTCATTTCTA TAACGAACCT 1380
GTGAAATCTG TTATTCACCC AATTCATGAC CAGAGTATGT TCTTGAGTGA AAGCCAGAAG 1440
AAACAGCTGA AGGAGGAGTT TGATATAGAG CCATGGACAT TTGAGCAACA CCTCGGTGAA 1500
GCTGTTTTCA TCCCTGCAGG TTGTCCTCAC CAAGTGAGAA ATATACAGTC TTGCATAAAG 1560
GTGGCACTTG GTTTTGTTGC TCCTGAGAGT GTAGAGGAAT GCCTTAGGCT AACACAAGAG 1620
TTCCGGAGAC TACCAAAAGA CCACAGAACC AACGAAGATA AATTAGAGAT TAAGGAAATA 1680
GTGATACATG CTGCGAGCTC AGCCATGAGA GAAGCTAAAG GTCTAATATA A
1732Nucleotide Fasta Sequence
>Bra000935.1-P|JHDM2|Brassica rapa
ATGGGAAGAGAAATGCAGAAGGGACCGTTAATTCCAAAGCCTGTGTTCCAGATATGCCCACCAACAGAATCTGGTAGTTGTGGCACTTCAACACTGGAGTTGAGACGCTTATGCGAATGTGATTGGGTTCAAAAACTGATAACCAATGCAGAGGAAGTTACTCTCCAGTTTCAGCCACCAGATGTGGATATTGCTCATGAATGTTCCTCATGCACTTCCATCATCAGTAGGCAGGCGGCGTTTAGGAAGACTGGGCATGATAACTTTTTGTACTGCCCAAATGCTGTTGATCTGGCTGAAGGCGATATTGTTCATTTTCAGTCGCATTGGATGAAGGCAGAACCTGTGATTGTCAGAAATGTTCTCGATAAGACATCTGGACTAAGTTGGGATCCAATGGTTATGTGGAGGGGTTGCAGGGAAATGAATCCAAAAGTTAAATGCAAAGGAGATGGGAAAAGCGTGAGAGTTTTAGACTGTTTTGACTGGTGTGAGGTTGAATTAAATATTCATCAGTTTTTCCAAGGATACTTGAAAGGCCGCATGGATCCCAAGGGTATGCCAGTAATGTTGAAGTTAAAGGATTGGCCTCCATCAACTTTATTTGAAGAGCGCCTTCCAAGGCATAACTCCGAGTTTATTTCTGCGTTACCTTTCTCTGTGTACACTGACGCAAAGTCAGGTATCTTCAATCTCGCAACAAGACTCCCAAAAGGATCCTTGAAGCCAGATCTTGGACCCAAGACGTACATTGCGTACGGTTTCCCTGAAGAGCTTGATGGAGGAGATTCTGTGACAAAGCTACATTGTGATGTTTCTGACGCTGTCAATGTGCTGACACACACAGCTAAAGTGGATATACCTCCCTGGCAATACAAACTTGTAAAAAAAGCACAGTTGCGTAAACAACACGTTGGTCAACAGACAGAAGCCAGTGCAAGTGAAAACAAGTCACTGAAAGAAGTAGAGAATGAGGAAGCTGCTTTAAAGAATTGTGATGGTCTTGTGAGAGAAGAGAGTTTAAAGAACAAGGCAGGTAACAAGGAACCGTCGAACAACAGTTCGAAACGGTCCAGCTCACAAGAAGGTAAATGCATTACTGCTATGGAGTCAGATCATGATCCAAAGGAGGCTGCGGGGTTAATTCCTCAGAAGAATGTAACGATGACAAACGAATCCATTGCTGACGAGAATCATAATGACGTCTGTTTGAAGACAGAGAGATTATCTTCCGAAGAAACTAATGGCAATGCCAATGAGAGTTCAAAGGCTGTGCGGGGTGGTGCTGTCTGGGACATCTTCCGAAGAGAGGATGTTCCAAAACTTATCGAGTATTTGAAAAGACACAAGCATGAGTTTCGTCATTTCTATAACGAACCTGTGAAATCTGTTATTCACCCAATTCATGACCAGAGTATGTTCTTGAGTGAAAGCCAGAAGAAACAGCTGAAGGAGGAGTTTGATATAGAGCCATGGACATTTGAGCAACACCTCGGTGAAGCTGTTTTCATCCCTGCAGGTTGTCCTCACCAAGTGAGAAATATACAGTCTTGCATAAAGGTGGCACTTGGTTTTGTTGCTCCTGAGAGTGTAGAGGAATGCCTTAGGCTAACACAAGAGTTCCGGAGACTACCAAAAGACCACAGAACCAACGAAGATAAATTAGAGATTAAGGAAATAGTGATACATGCTGCGAGCTCAGCCATGAGAGAAGCTAAAGGTCTAATATAA
|
| Sequence Source |
Ensembl |
| Orthology |
|
| Created Date |
25-Jun-2016 |
