WERAM Information

Tag Content
WERAM ID WERAM-Art-0088
Ensembl Protein ID AT3G52280.1
Uniprot Accession Q9FT54; GTE6_ARATH
Genbank Protein ID NP_190796.1
Protein Name Transcription factor GTE6
Genbank Nucleotide ID NM_115088.1
Gene Name GTE6;At3g52280;T25B15.50
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G52280 AT3G52280.1 AT3G52280.1
AT3G52280 AT3G52280.2 AT3G52280.2
Details
Type Family Domain Substrates AA References (PMIDs)
Ac_Reader Bromodomain Bromodomain K 12466527
Status Reviewed
Classification
Type Family E-value Score Start End
Ac_Reader Bromodomain 2.50e-24 85.9 107 181
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)		 Regulates differences in leaf patterning between juvenile and mature leaves by controlling differences in the development of primordia produced during juvenile and mature phases. Acts by activating transcription of the myb-domain protein AS1, a gene involved in leaf-axis specification. Associates with the promoter and the start of the transcribed region of AS1 and up-regulates expression of AS1 through acetylation of histones H3 and H4.
Domain Profile
  Ac_Reader Bromodomain
    BROMO.txt   2 ehevsepFrepvdpq.leipdYydiikePmdLstikerleegn...YsspeefvkDvrlifnNakaynenkssvq 72 
                  +h++++pF++pv+ + l ++dY+++i++Pmd+stik+++e++    Y+ + + ++D+rl+f+Na++yne+ s+v+
  AT3G52280.1 107 QHKCAWPFMHPVNVEgLGLHDYFEVIDKPMDFSTIKNQMEAKDgtgYKHVMQIYADMRLVFENAMNYNEETSDVY 181
                  79****************************************99****************************997 PP
Protein Sequence
(Fasta)		MADSVPGHVA GGGLQGFSVD AECIKQRVDE VLQWVDSLEH KLKEVEEFYS SIGVSNSGSI 60
GKDTEKGRHV VGIRKIQQEA ARREAVAAKR MQDLMRQFGT IFRQITQHKC AWPFMHPVNV 120
EGLGLHDYFE VIDKPMDFST IKNQMEAKDG TGYKHVMQIY ADMRLVFENA MNYNEETSDV 180
YSMAKKLLEK FEEKWAHFLP KVQEEEKIRE EEEKQAAKEA LLAKEASHIK TTRELGNEIC 240
HANDELEKLM RKVVERCRKI TIEEKRNIGL ALLKLSPDDL QKVLGIVAQA NPSFQPRAEE 300
VSIEMDILDE PTLWRLKFFV KDALDNAMKK KKEEETKTRE LSGAQKKEVS KKRNATTKLA 360
ERKTKRSRI 369
Nucleotide Sequence
(Fasta)		ATGGCTGACT CAGTGCCAGG TCATGTCGCC GGCGGAGGTT TACAGGGTTT CTCTGTCGAC 60
GCCGAGTGCA TCAAGCAGCG TGTCGACGAG GTTTTACAGT GGGTTGATTC GCTTGAGCAT 120
AAACTGAAAG AAGTGGAGGA GTTTTACTCG AGCATTGGTG TCTCAAACTC TGGCTCTATT 180
GGTAAAGATA CAGAAAAAGG GAGACATGTT GTGGGGATTA GGAAGATTCA ACAAGAGGCT 240
GCGCGTAGAG AAGCTGTTGC TGCTAAAAGA ATGCAGGACC TTATGCGTCA ATTTGGAACA 300
ATCTTTCGTC AGATAACTCA GCATAAGTGC GCTTGGCCGT TTATGCATCC TGTCAATGTT 360
GAAGGTCTTG GTTTGCATGA CTACTTTGAG GTTATTGACA AGCCTATGGA CTTCAGCACG 420
ATAAAAAATC AAATGGAGGC TAAGGATGGT ACCGGGTACA AACATGTCAT GCAAATTTAT 480
GCTGATATGC GGCTAGTGTT TGAGAACGCA ATGAATTATA ATGAAGAAAC AAGTGATGTT 540
TACTCTATGG CGAAAAAGTT ACTGGAAAAG TTTGAGGAGA AGTGGGCACA CTTTCTTCCA 600
AAGGTTCAAG AAGAGGAGAA AATACGAGAG GAAGAGGAGA AGCAAGCAGC AAAGGAGGCG 660
CTGCTAGCAA AAGAAGCATC TCATATCAAA ACAACTAGAG AATTGGGGAA TGAGATTTGC 720
CATGCTAATG ACGAGCTGGA GAAGCTAATG CGTAAAGTTG TGGAAAGATG CAGGAAAATC 780
ACAATTGAGG AGAAGCGTAA TATTGGATTG GCATTGTTAA AACTGTCACC GGATGATCTA 840
CAGAAAGTGT TGGGTATAGT TGCTCAGGCT AACCCGAGCT TTCAACCTAG AGCAGAGGAA 900
GTTAGTATTG AGATGGACAT ACTGGACGAA CCAACACTAT GGAGGCTAAA GTTCTTTGTG 960
AAGGATGCGT TGGATAATGC AATGAAGAAG AAGAAAGAAG AGGAGACAAA GACTAGAGAA 1020
TTGAGTGGAG CACAAAAGAA AGAGGTTTCG AAGAAACGAA ATGCGACTAC AAAGTTAGCT 1080
GAGAGGAAAA CGAAGCGGTC ACGCATATGA 1111
Sequence Source Ensembl
Keyword

KW-0010--Activator
KW-0025--Alternative splicing
KW-0103--Bromodomain
KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0217--Developmental protein
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
--
Interpro

IPR001487--Bromodomain
IPR017413--GTE1/GTE6
IPR027353--NET_dom
PROSITE

PS50014--BROMODOMAIN_2
PS51525--NET
Pfam

PF17035--BET
PF00439--Bromodomain
Gene Ontology

GO:0005634--C:nucleus
GO:0016568--P:chromatin modification
GO:0007275--P:multicellular organism development
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Arl-0083 fgenesh2_kg.5__ 1585__ AT3G52280.1 Arabidopsis lyrata 96 4e-171 597
WERAM-Bro-0136 Bo7g102660.1 Brassica oleracea 77 8e-133 470
WERAM-Brr-0066 Bra012810.1-P Brassica rapa 75 4e-131 465
WERAM-Pot-0094 POPTR_0008s04260.1 Populus trichocarpa 61 1e-92 337
WERAM-Glm-0226 GLYMA17G23240.2 Glycine max 62 3e-90 329
WERAM-Thc-0119 EOY18575 Theobroma cacao 59 5e-89 325
WERAM-Sol-0108 Solyc09g015660.2.1 Solanum lycopersicum 62 5e-88 322
WERAM-Viv-0080 VIT_13s0019g03950.t01 Vitis vinifera 58 5e-87 318
WERAM-Prp-0066 EMJ19316 Prunus persica 58 2e-84 309
WERAM-Met-0139 KEH25663 Medicago truncatula 59 4e-83 305
WERAM-Amt-0020 ERM94715 Amborella trichopoda 54 6e-76 281
WERAM-Sot-0050 PGSC0003DMT400044320 Solanum tuberosum 55 6e-71 265
WERAM-Mua-0129 GSMUA_Achr8P29340_001 Musa acuminata 49 2e-70 263
WERAM-Sei-0027 Si006741m Setaria italica 51 6e-69 258
WERAM-Zem-0063 GRMZM2G103166_P01 Zea mays 41 9e-69 258
WERAM-Tra-0011 Traes_1BL_1146A9F7F.1 Triticum aestivum 44 8e-66 248
WERAM-Sob-0128 Sb10g002570.1 Sorghum bicolor 41 9e-66 248
WERAM-Brd-0026 BRADI1G51430.1 Brachypodium distachyon 45 1e-65 247
WERAM-Tru-0010 TRIUR3_05662-P1 Triticum urartu 46 3e-65 246
WERAM-Orp-0056 OPUNC06G02290.1 Oryza punctata 43 4e-65 245
WERAM-Orr-0059 ORUFI06G02420.1 Oryza rufipogon 42 6e-65 245
WERAM-Orm-0056 OMERI06G02350.2 Oryza meridionalis 42 1e-64 244
WERAM-Org-0056 ORGLA06G0024300.1 Oryza glaberrima 42 1e-64 244
WERAM-Orb-0058 OBART06G02360.1 Oryza barthii 42 1e-64 244
WERAM-Ori-0070 BGIOSGA022262-PA Oryza indica 42 1e-64 244
WERAM-Orni-0055 ONIVA06G02920.1 Oryza nivara 42 1e-64 244
WERAM-Orbr-0068 OB06G12290.1 Oryza brachyantha 43 2e-64 243
WERAM-Hov-0068 MLOC_58253.2 Hordeum vulgare 41 5e-64 242
WERAM-Aet-0066 EMT01547 Aegilops tauschii 42 1e-63 241
WERAM-Orl-0042 KN538905.1_FGP017 Oryza longistaminata 47 1e-62 237
WERAM-Lep-0061 LPERR06G02150.1 Leersia perrieri 41 4e-60 229
WERAM-Php-0089 PP1S353_39V6.1 Physcomitrella patens 47 3e-58 223
WERAM-Sem-0080 EFJ19669 Selaginella moellendorffii 45 8e-52 201
WERAM-Orgl-0002 OGLUM01G08180.1 Oryza glumaepatula 31 2e-23 107
WERAM-Ors-0020 OS02T0250300-01 Oryza sativa 30 2e-22 103
WERAM-Anp-0056 ENSAPLP00000006179.1 Anas platyrhynchos 27 4e-20 96.3
WERAM-Dar-0055 ENSDARP00000038787.6 Danio rerio 40 6e-19 92.4
WERAM-Anc-0036 ENSACAP00000004148.2 Anolis carolinensis 36 8e-19 92.0
WERAM-Soa-0062 ENSSARP00000006154.1 Sorex araneus 35 2e-18 90.9
WERAM-Osl-0042 ABO96608 Ostreococcus lucimarinus 44 2e-18 90.9
WERAM-Aim-0034 ENSAMEP00000002443.1 Ailuropoda melanoleuca 48 2e-18 90.9
WERAM-Tub-0130 ENSTBEP00000014498.1 Tupaia belangeri 35 2e-18 90.9
WERAM-Orc-0130 ENSOCUP00000011195.2 Oryctolagus cuniculus 48 2e-18 90.9
WERAM-Eqc-0079 ENSECAP00000010277.1 Equus caballus 35 2e-18 90.9
WERAM-Tas-0039 ENSTSYP00000004094.1 Tarsius syrichta 35 2e-18 90.9
WERAM-Ict-0092 ENSSTOP00000009696.2 Ictidomys tridecemlineatus 35 2e-18 90.9
WERAM-Otg-0077 ENSOGAP00000005790.2 Otolemur garnettii 35 2e-18 90.9
WERAM-Ocp-0078 ENSOPRP00000006813.1 Ochotona princeps 35 2e-18 90.5
WERAM-Loa-0152 ENSLAFP00000013518.3 Loxodonta africana 35 2e-18 90.5
WERAM-Caj-0224 ENSCJAP00000040148.2 Callithrix jacchus 35 2e-18 90.5
WERAM-Prc-0094 ENSPCAP00000008495.1 Procavia capensis 35 2e-18 90.5
WERAM-Sus-0016 ENSSSCP00000001595.1 Sus scrofa 35 2e-18 90.5
WERAM-Vip-0081 ENSVPAP00000007489.1 Vicugna pacos 35 2e-18 90.5
WERAM-Tut-0048 ENSTTRP00000004025.1 Tursiops truncatus 35 2e-18 90.5
WERAM-Mup-0018 ENSMPUP00000001938.1 Mustela putorius furo 35 2e-18 90.5
WERAM-Fec-0108 ENSFCAP00000008990.2 Felis catus 35 2e-18 90.5
WERAM-Ova-0082 ENSOARP00000008629.1 Ovis aries 35 2e-18 90.5
WERAM-Cap-0031 ENSCPOP00000002556.2 Cavia porcellus 35 2e-18 90.5
WERAM-Bot-0108 ENSBTAP00000014704.5 Bos taurus 35 2e-18 90.5
WERAM-Caf-0006 ENSCAFP00000001265.3 Canis familiaris 35 2e-18 90.5
WERAM-Ptv-0132 ENSPVAP00000011321.1 Pteropus vampyrus 35 2e-18 90.5
WERAM-Mam-0211 ENSMMUP00000030455.2 Macaca mulatta 35 2e-18 90.5
WERAM-Hos-0257 ENSP00000391246.2 Homo sapiens 35 2e-18 90.5
WERAM-Gog-0065 ENSGGOP00000005721.2 Gorilla gorilla 35 2e-18 90.5
WERAM-Poa-0157 ENSPPYP00000019309.1 Pongo abelii 35 2e-18 90.5
WERAM-Mim-0129 ENSMICP00000013010.1 Microcebus murinus 48 2e-18 90.5
WERAM-Ran-0004 ENSRNOP00000000535.4 Rattus norvegicus 35 2e-18 90.5
WERAM-Paa-0136 ENSPANP00000012397.1 Papio anubis 35 2e-18 90.5
WERAM-Pat-0149 ENSPTRP00000030782.4 Pan troglodytes 35 2e-18 90.5
WERAM-Nol-0052 ENSNLEP00000006353.1 Nomascus leucogenys 48 2e-18 90.5
WERAM-Dan-0048 ENSDNOP00000004798.3 Dasypus novemcinctus 35 2e-18 90.5
WERAM-Gaga-0001 ENSGALP00000000211.4 Gallus gallus 36 2e-18 90.5
WERAM-Mum-0058 ENSMUSP00000025193.6 Mus musculus 35 3e-18 90.5
WERAM-Myl-0052 ENSMLUP00000004424.2 Myotis lucifugus 48 3e-18 90.5
WERAM-Mod-0128 ENSMODP00000017862.3 Monodelphis domestica 35 3e-18 90.5
WERAM-Lac-0143 ENSLACP00000016410.1 Latimeria chalumnae 34 3e-18 90.5
WERAM-Chs-0069 ENSCSAP00000002413.1 Chlorocebus sabaeus 48 3e-18 90.5
WERAM-Sah-0013 ENSSHAP00000001287.1 Sarcophilus harrisii 35 3e-18 90.1
WERAM-Tar-0033 ENSTRUP00000007860.1 Takifugu rubripes 45 3e-18 90.1
WERAM-Xim-0143 ENSXMAP00000011561.1 Xiphophorus maculatus 40 3e-18 90.1
WERAM-Pof-0204 ENSPFOP00000016934.2 Poecilia formosa 40 4e-18 89.7
WERAM-Dio-0036 ENSDORP00000004207.1 Dipodomys ordii 47 4e-18 89.7
WERAM-Chh-0047 ENSCHOP00000005329.1 Choloepus hoffmanni 46 4e-18 89.7
WERAM-Ere-0096 ENSEEUP00000009790.1 Erinaceus europaeus 38 4e-18 89.7
WERAM-Orn-0236 ENSONIP00000025241.1 Oreochromis niloticus 42 5e-18 89.4
WERAM-Asm-0174 ENSAMXP00000017222.1 Astyanax mexicanus 49 5e-18 89.4
WERAM-Ora-0083 ENSOANP00000013848.2 Ornithorhynchus anatinus 47 9e-18 88.6
WERAM-Orla-0126 ENSORLP00000015257.1 Oryzias latipes 49 1e-17 88.6
Created Date 25-Jun-2016