WERAM Information

Tag Content
WERAM ID WERAM-Art-0056
Ensembl Protein ID AT2G42150.1
Uniprot Accession O48523; O48523_ARATH
Genbank Protein ID NP_181745.1
Protein Name DNA-binding bromodomain-containing protein
Genbank Nucleotide ID NM_129778.2
Gene Name At2g42150;BRD9
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G42150 AT2G42150.1 AT2G42150.1
Details
Type Family Domain Substrates AA References (PMIDs)
Ac_Reader Bromodomain Bromodomain K 12466527
Status Reviewed
Classification
Type Family E-value Score Start End
Ac_Reader Bromodomain 8.30e-12 45.8 286 353
Organism Arabidopsis thaliana
NCBI Taxa ID 3702
Functional Description
(View)
Domain Profile
  Ac_Reader Bromodomain
    BROMO.txt   3 hevsepFrepvdpqleipdYydiikePmdLstikerleegnYss.peefvkDvrlifnNakaynenkss 70 
                  h++ ++F+++ ++ +e  +Y +ii+e++d++ i++r+e g Y+s   +f +D+ l++nNa+ ++ ++ss
  AT2G42150.1 286 HPCGSHFSRRLER-QETIEYGTIIREHVDFEIIRKRVEGGLYKSwRINFFRDLLLLVNNARVFYHRGSS 353
                  88999********.8*****************************999*****************99886 PP
Protein Sequence
(Fasta)		MAKPENDVTL TEKQTWSTWE ELLLACAVHR HGTESWNSVS AEIQKLSPNL CSLTASACRH 60
KYFDLKSRFT QELPVPESVA EISTAPWLEE LRKLRVDELR REVEQYDLSI STLQSKVKQL 120
EEEREMSFIK PDTETENLDL ERKKERSDSG EPVPNPPVQL MNETISPDPK EIGSENTERE 180
EEMAGSGGGE SKLAGEDSCR GSCESVEKEP TTNSERVEPV SVTELIESED GASRGEEITS 240
DVQSSASLPR KGTSEPDKED QSPTSAKDFT VESQPLISFV EILLSHPCGS HFSRRLERQE 300
TIEYGTIIRE HVDFEIIRKR VEGGLYKSWR INFFRDLLLL VNNARVFYHR GSSEFKFAEQ 360
LHQLVKKQMT TTLKGLSNRD EISISPPKEE VVAIPSSKPV SSKPRMSVPN IVACRKRSAL 420
AAKPLLLLPP GPDKKAKKTD HVVDYDEKPV SDKDGEASGK DDDDSLIVKI MTRGRTSSTG 480
KVANRNDKNR DSSLNVDDSK DKVKKTDEEK KGGSKKKRAA SFLRRMKVGS SDDTLKRSSA 540
ADSSTTGKGG GAEQRKNNSN KADNKKTPIP KIRQTNKKAS PVKRSNNGRN SEREAAPSSS 600
SYPILAKRSR DAGEKEEASS YSPRLKKRAR R 631
Nucleotide Sequence
(Fasta)		AAAAATATAA CGAAGGGAAA GACTAAAGAA GAGACACATT CATTAACAAT TCATACACCT 60
TTGTTCAAAT CAACGAATAA GCTTCTTTAT TTTAATGGCA AAGCCGGAAA ATGACGTCAC 120
CTTAACCGAG AAACAAACAT GGAGCACATG GGAAGAGCTT CTTCTCGCCT GCGCCGTACA 180
CCGTCACGGT ACCGAATCAT GGAACTCTGT TTCCGCCGAA ATCCAGAAAC TGAGTCCCAA 240
CCTCTGTTCC CTCACCGCCT CCGCTTGCCG CCACAAGTAC TTCGACCTCA AAAGCCGGTT 300
CACCCAAGAG CTGCCCGTAC CGGAATCCGT CGCTGAGATC TCAACCGCTC CTTGGCTAGA 360
GGAGTTAAGG AAGCTCCGCG TCGATGAGCT CCGTCGCGAA GTTGAACAGT ACGATTTATC 420
TATCTCCACG TTGCAGTCGA AGGTGAAGCA ATTGGAAGAA GAGAGAGAGA TGAGTTTCAT 480
TAAACCGGAC ACGGAAACCG AGAATTTAGA TCTAGAGAGG AAGAAAGAGC GTAGCGATTC 540
CGGTGAACCA GTCCCAAACC CGCCGGTTCA GCTAATGAAC GAAACCATTT CTCCAGATCC 600
CAAAGAAATC GGATCGGAAA ACACGGAGAG GGAGGAGGAA ATGGCCGGAA GCGGCGGCGG 660
AGAATCGAAG CTTGCCGGAG AGGATTCTTG TAGAGGAAGC TGTGAAAGTG TGGAGAAGGA 720
ACCGACGACG AACTCGGAGA GAGTTGAACC GGTGAGTGTG ACCGAGTTGA TAGAGTCGGA 780
GGACGGAGCG AGTCGTGGAG AGGAGATTAC TAGTGATGTG CAGAGCTCGG CGAGCTTGCC 840
AAGAAAGGGA ACGTCGGAGC CGGATAAGGA AGATCAATCT CCGACGAGCG CCAAAGATTT 900
CACCGTTGAA TCACAGCCGT TGATTAGTTT TGTCGAGATT CTTCTGTCTC ATCCCTGTGG 960
TTCCCACTTT TCGCGCCGAC TCGAACGTCA GGAAACAATT GAGTACGGTA CAATAATTAG 1020
AGAGCACGTA GATTTTGAGA TAATTCGGAA GCGAGTCGAA GGAGGCTTGT ACAAAAGTTG 1080
GAGGATCAAC TTCTTTCGTG ATTTGCTGCT ACTTGTTAAT AATGCAAGAG TGTTTTATCA 1140
CAGAGGATCT TCAGAGTTTA AATTTGCTGA GCAGCTTCAC CAACTCGTCA AGAAACAGAT 1200
GACTACTACT CTCAAGGGAC TTAGTAATAG AGATGAGATC TCAATCTCAC CACCAAAAGA 1260
AGAAGTTGTT GCAATCCCTT CATCAAAGCC TGTTTCTTCT AAACCAAGAA TGTCTGTTCC 1320
TAATATTGTA GCTTGTCGGA AACGTAGTGC CTTGGCTGCT AAACCTTTGC TATTATTGCC 1380
TCCTGGACCA GATAAAAAGG CCAAGAAAAC AGATCATGTT GTGGACTATG ATGAGAAGCC 1440
GGTTTCAGAC AAGGATGGTG AAGCCTCTGG GAAAGACGAT GATGACTCTC TGATTGTGAA 1500
GATAATGACT AGAGGAAGAA CCTCCTCGAC GGGAAAAGTA GCTAACAGGA ACGACAAGAA 1560
CCGTGACTCC AGTTTGAATG TTGATGATAG CAAAGATAAG GTTAAGAAAA CTGATGAAGA 1620
GAAGAAAGGT GGCTCGAAAA AGAAAAGGGC TGCGAGTTTT CTCAGGAGAA TGAAAGTGGG 1680
CTCTTCGGAT GACACATTGA AGCGTAGCTC TGCTGCTGAT TCTTCTACTA CGGGAAAAGG 1740
AGGAGGAGCG GAACAGAGGA AGAATAACAG CAACAAAGCT GATAATAAGA AAACACCGAT 1800
ACCAAAGATA AGACAAACAA ATAAGAAAGC AAGTCCTGTG AAGAGAAGCA ATAATGGTCG 1860
AAACTCAGAA AGAGAAGCTG CTCCATCTTC TTCATCTTAT CCTATTCTAG CAAAGCGAAG 1920
CAGAGATGCT GGTGAAAAAG AGGAGGCGTC TTCTTATTCA CCACGCTTGA AGAAACGTGC 1980
AAGGAGGTGA TTTAGTTATT GTACTACTTC TATAACTTAA CTTGAGATGA AAATCAGAAA 2040
CTAATAAATT CCAAAGAGTC GCAAAACATT CGAAAGGATA TGCTTATAGA TATATTTGGG 2100
CCCAC 2106
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-1185--Reference proteome
--
Interpro

IPR001487--Bromodomain
IPR009057--Homeodomain-like
IPR001005--SANT/Myb
PROSITE

PS50014--BROMODOMAIN_2
Pfam

PF00439--Bromodomain
PF00249--Myb_DNA-binding
Gene Ontology

GO:0003677--F:DNA binding
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Brr-0087 Bra016893.1-P Brassica rapa 58 4e-153 538
WERAM-Arl-0012 Al_scaffold_0005_2712 Arabidopsis lyrata 48 4e-118 422
WERAM-Thc-0062 EOY09477 Theobroma cacao 41 4e-97 352
WERAM-Bro-0155 Bo8g092340.1 Brassica oleracea 44 1e-94 344
WERAM-Prp-0113 EMJ03206 Prunus persica 41 6e-67 253
WERAM-Viv-0085 VIT_13s0156g00340.t01 Vitis vinifera 34 3e-64 243
WERAM-Mua-0126 GSMUA_Achr8P25530_001 Musa acuminata 38 2e-60 231
WERAM-Sol-0008 Solyc01g073950.2.1 Solanum lycopersicum 34 5e-49 193
WERAM-Glm-0090 GLYMA08G15870.1 Glycine max 35 9e-48 189
WERAM-Pot-0008 POPTR_0001s23640.1 Populus trichocarpa 34 1e-45 182
WERAM-Brd-0111 BRADI4G33820.1 Brachypodium distachyon 35 6e-39 159
WERAM-Zem-0018 GRMZM2G022499_P01 Zea mays 36 6e-38 156
WERAM-Orp-0090 OPUNC08G18190.1 Oryza punctata 50 4e-27 120
WERAM-Orni-0095 ONIVA08G22660.1 Oryza nivara 48 6e-26 116
WERAM-Orgl-0092 OGLUM08G21320.1 Oryza glumaepatula 48 6e-26 116
WERAM-Org-0093 ORGLA08G0177200.1 Oryza glaberrima 49 1e-25 115
WERAM-Ors-0085 OS08T0510700-01 Oryza sativa 48 3e-25 114
WERAM-Orr-0099 ORUFI08G22500.1 Oryza rufipogon 48 3e-25 114
WERAM-Ori-0091 BGIOSGA026697-PA Oryza indica 48 3e-25 114
WERAM-Met-0045 AES66032 Medicago truncatula 42 1e-24 112
WERAM-Amt-0004 ERN03421 Amborella trichopoda 29 1e-23 108
WERAM-Sob-0110 Sb07g027680.1 Sorghum bicolor 52 7e-23 106
WERAM-Hov-0108 MLOC_75616.3 Hordeum vulgare 48 8e-23 106
WERAM-Tru-0078 TRIUR3_28812-P1 Triticum urartu 32 1e-22 105
WERAM-Lep-0092 LPERR08G16990.1 Leersia perrieri 48 7e-22 103
WERAM-Sot-0030 PGSC0003DMT400028077 Solanum tuberosum 27 2e-20 98.2
WERAM-Aet-0108 EMT21081 Aegilops tauschii 36 3e-17 87.8
WERAM-Php-0024 PP1S148_42V6.1 Physcomitrella patens 42 5e-16 83.6
WERAM-Sem-0100 EFJ37441 Selaginella moellendorffii 33 1e-15 82.4
WERAM-Tra-0071 Traes_2BS_832F28506.1 Triticum aestivum 38 2e-15 81.6
WERAM-Orb-0096 OBART08G20090.1 Oryza barthii 41 4e-15 80.5
WERAM-Sei-0046 Si013408m Setaria italica 38 1e-14 79.3
WERAM-Orl-0103 KN541195.1_FGP005 Oryza longistaminata 41 7e-08 56.6
Created Date 25-Jun-2016