WERAM Information

Tag Content
WERAM ID WERAM-Sob-0056
Ensembl Protein ID Sb03g041890.1
Gene Name
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb03g041890 Sb03g041890.1 Sb03g041890.1
Status Unreviewed
Classification
Type Family E-value Score Start End
Me_Reader PHD 1.10e-12 48.8 19 120
Organism Sorghum bicolor
Domain Profile
  Me_Reader PHD
        PHD.txt  3 iClvCgkddegekemvqCde..Cd.dwfHlkCvklplsslpeg.....kswyCpsC 50
                    C vCg ++e++k ++ C++  C  + +H++C++ +  ++ ++     + wyCpsC
  Sb03g041890.1 19 RCKVCGGCEEKDKRFLVCSHseCFyKYYHVRCLTKE--QIASDvqmgsQLWYCPSC 72
                   69999888888788*****9999889********99..444333455456****** PP
        PHD.txt   4 ClvCgkddegekemvqCdeCddwfHlkCvklplsslpegkswyCpsCke 52 
                    C+vC  d ++ ++++ Cd Cd+++Hl+C+++p++++p +  w C  Ck+
  Sb03g041890.1  74 CRVCLCDTDD-DKIILCDCCDQAYHLYCLSPPKTKVPTK-YWDCDPCKK 120
                    7887433333.34************************99.9******97 PP
Protein Sequence
(Fasta)		MAPSQLPELE LSPTAIFTRC KVCGGCEEKD KRFLVCSHSE CFYKYYHVRC LTKEQIASDV 60
QMGSQLWYCP SCLCRVCLCD TDDDKIILCD CCDQAYHLYC LSPPKTKVPT KYWDCDPCKK 120
RKEKEKRILM LHRKDYDGDI LKSTEIDGLD LLLNAAENST GDKETEVATT TGK 173
Nucleotide Sequence
(Fasta)		AAGCATGCTC TGCTATGCTA GAAGCTCCGC GTTCCGGTCG GTGAACGCCA CTGCCGCCGC 60
GAGCTCAGCT CACCTCCGAC GGCACAGAAC GAAGCCACTG CCGCACCCGA GGCAACCGCG 120
TCGACCCACC CCACCCAGAC GACACCTCCT CAGCACCAAC ACGCCGGGAC TACCAGGGCC 180
GCGCGCGCCT CGCGCCCCCG ATCCAAATCC AAACGGTGCA GGCGGACCAG CAGCGGCGCG 240
CACGGGCGGC CACCGCGCCT AATTGGCGCT GCGGCCGCCA CCACGCCTGA AAACACATGC 300
GATCGTGGGA CCTCCGATCC CGTCCCATGT CACCGCCGGC CTGCCCGTGC CTTCCCAAGT 360
TCCTAGCACC ACAGGCGGCG CACAGGTGAC GACGGAGCGG CAGCAGTAAC CGGCAGGCGA 420
ATTCGAAATC CAGCCGCGCC GCGGGGCGAA CTCGCTCTCA TGTGCAGGCG TGGCGTGGCG 480
TGCAGCGCCG GCCCCAACCG CGGCCGGCCG TCGCGCCGCC GAGGCTACGA CCGTTCGGGG 540
CCCTCCCTGC CTCCACGCGG AAGCTCTACT TCCTGCCCCT CCCTCAAGAC TGAACCCCGT 600
CGCCTCTCGG GTCACCTTCG CCAGTCGCCA CGCCGTCCCG CCCGGACCGC CGTGGCGCTC 660
TGCTCCGATC TACCAAATCC ATGGCTCGGC ACCGAGGACG CGGACGCATA ACAATCATGC 720
CATCCGCCAG CGCCTTGTCT CGCCGTCGGA TCGCCAGATG GGAGATACGG AACCAAACAA 780
GGACCAAGAA CGGGATGGAA CAGCACATAT GCTGCTGAGT GCTGACTACT GGAAGAAGCA 840
CCATCTGCAG CTACGTTGCG TAGTCAACAC CGTGTCTTGC TTGTTCAACC ACATTGCTGC 900
TGAGAGGCCT TCATGGTACC AGTGGCACAT ACGTCGTGGG AATGAAGAGT TGAACCAAGA 960
TGAGAAGTGG TAGCGTGCTG GATCCTCCCC TCTTTTTTTT TTGGAAGAAG GCAGGAACGT 1020
TGCCTCGAAC AATTAAGGAG GAGCGTTCCC CCCCTCTTGA GCTGTATCCA ATATATATAT 1080
CTCTCTCGCA CATCTTCCCT GGGATTCCGT GCTCCTCTTG CAGTCCTCAG AACGCAGCTC 1140
CCGCAGCCAG CCCCCAGAGC GCCGCCAGGC ACAGGGATCT GAAGTATGGC ACCGTCTCAA 1200
CTTCCGGAGC TGGAGCTGTC CCCTACTGCT ATCTTCACCC GCTGCAAGGT GTGTGGAGGT 1260
TGTGAAGAGA AGGACAAGAG GTTCCTGGTC TGCAGCCACT CTGAGTGCTT TTACAAGTAC 1320
TACCACGTTC GTTGCCTGAC TAAAGAGCAG ATTGCAAGTG ATGTGCAGAT GGGCAGCCAG 1380
CTCTGGTACT GTCCATCTTG CCTCTGCCGT GTCTGCCTGT GTGACACGGA CGATGATAAG 1440
ATCATCCTGT GTGACTGCTG CGATCAGGCC TATCACCTCT ACTGCCTCAG TCCTCCTAAA 1500
ACAAAGGTGC CTACGAAGTA TTGGGACTGC GACCCCTGCA AGAAGCGGAA GGAAAAGGAG 1560
AAGAGGATAT TGATGCTCCA CAGGAAGGAT TACGACGGTG ACATTCTCAA GAGTACCGAG 1620
ATCGATGGCC TGGACTTGCT GCTTAATGCT GCGGAAAACT CGACGGGTGA TAAGGAGACG 1680
GAGGTGGCTA CGACCACCGG AAAGTAAGAG GCATGGAGGT TGTGAGCAAG CGGATTTTGT 1740
TGTCCTCTGC CGTGAGTCCA GCTAGCGCGA AGTTTCTGCC CTGGGAGGCT CAGCTCTGCC 1800
CAGCTGAATG GGACGAGCGG CTGAGGGCAG TAGAAACTTG TGCTTTCTGA ACTGAATGGT 1860
TAGAGAATAT GAATCCGCTA CAATTGCTCC AATCTATTTC TTTATTTACC ATTTCTTTCA 1920
CCTCAGCAAG GTCATACTTG ACAAACTTGC CAGCGTCTCT GAACTTGAGA AGATTGTGAT 1980
TACCCGTGAT GGTTTTAATG GTTTATTATG GAACTGGAAC TTGGTAGACT T 2032
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Zem-0020 GRMZM2G025703_P02 Zea mays 73 5e-55 210
WERAM-Org-0006 ORGLA01G0155400.1 Oryza glaberrima 50 4e-33 137
WERAM-Orni-0004 ONIVA01G21500.1 Oryza nivara 50 6e-33 137
WERAM-Orb-0004 OBART01G18970.1 Oryza barthii 50 6e-33 137
WERAM-Orl-0105 KN541449.1_FGP002 Oryza longistaminata 50 6e-33 137
WERAM-Orr-0005 ORUFI01G21360.1 Oryza rufipogon 50 6e-33 137
WERAM-Ori-0006 BGIOSGA001450-PA Oryza indica 50 6e-33 137
WERAM-Orgl-0005 OGLUM01G22570.1 Oryza glumaepatula 50 6e-33 137
WERAM-Sei-0003 Si000106m Setaria italica 51 2e-32 135
WERAM-Orbr-0006 OB01G28790.1 Oryza brachyantha 50 2e-32 135
WERAM-Orp-0005 OPUNC01G19360.2 Oryza punctata 49 2e-32 135
WERAM-Brd-0051 BRADI2G40700.1 Brachypodium distachyon 50 2e-31 132
WERAM-Lep-0006 LPERR01G16460.1 Leersia perrieri 49 2e-30 129
WERAM-Tra-0124 Traes_3DL_9A4F03809.2 Triticum aestivum 51 2e-29 125
WERAM-Aet-0023 EMT29753 Aegilops tauschii 51 2e-29 125
WERAM-Mua-0027 GSMUA_Achr11P18730_001 Musa acuminata 52 3e-29 124
WERAM-Ors-0007 OS01T0883400-00 Oryza sativa 49 1e-28 123
WERAM-Hov-0006 MLOC_11639.4 Hordeum vulgare 48 1e-28 122
WERAM-Orm-0012 OMERI01G36430.1 Oryza meridionalis 49 1e-28 122
WERAM-Tru-0034 TRIUR3_17458-P1 Triticum urartu 51 8e-28 120
WERAM-Pot-0025 POPTR_0002s07740.1 Populus trichocarpa 42 5e-20 94.4
WERAM-Brr-0015 Bra003689.1-P Brassica rapa 42 4e-19 91.3
WERAM-Viv-0110 VIT_18s0001g01580.t01 Vitis vinifera 43 8e-19 90.1
WERAM-Bro-0111 Bo6g083390.1 Brassica oleracea 44 2e-18 89.4
WERAM-Thc-0098 EOY16466 Theobroma cacao 42 2e-17 85.5
WERAM-Arl-0020 fgenesh1_pg.C_scaffold_2001986 Arabidopsis lyrata 41 5e-17 84.3
WERAM-Art-0031 AT1G77250.1 Arabidopsis thaliana 39 2e-16 82.4
WERAM-Met-0070 KEH35359 Medicago truncatula 42 2e-16 82.0
WERAM-Glm-0157 GLYMA13G09495.1 Glycine max 49 4e-16 81.3
WERAM-Sot-0052 PGSC0003DMT400046397 Solanum tuberosum 39 3e-14 75.1
WERAM-Sol-0066 Solyc04g058190.2.1 Solanum lycopersicum 46 4e-14 74.7
WERAM-Prp-0045 EMJ26345 Prunus persica 44 8e-14 73.6
WERAM-Amt-0050 ERN13236 Amborella trichopoda 49 9e-11 63.5
WERAM-Cap-0033 ENSCPOP00000002700.2 Cavia porcellus 35 1e-05 47.0
Created Date 25-Jun-2016