WERAM Information

Tag Content
WERAM ID WERAM-Pem-0089
Ensembl Protein ID ENSPMAP00000009325.1
Gene Name gtf3c4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSPMAG00000008470.1 ENSPMAT00000009365.1 ENSPMAP00000009325.1
Status Unreviewed
Classification
Type Family E-value Score Start End
HAT HAT_other 5.00e-53 206
Organism Petromyzon marinus
Domain Profile
  HAT HAT_other
Query: 2   SVQTAHVTGLHPQPICGMAAVCSNRWXXXXXXXXXXXXXIPAVAGQRRWVRFERRIMRLP 61
           +V  +HVTGLH  PI  M A   N               IP        ++FE ++++L 
Sbjct: 412 NVHNSHVTGLHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVA--LKFEHQLIKLS 469
Query: 62  GPLGRARIRGLAASPNGAFLAVLTTEGLSVGLHPPQRTYSLAFVSLVNPDEAFRRXXXXX 121
              G  R  G+A SP GA+LA++TTEG+  GLHP  + Y + FV+L   +EA  +     
Sbjct: 470 DVFGSVRTHGIAVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESS 529
Query: 122 XXXXXXXXACGLAFLRADLLEVLRSHSLDVGGRVPAPMLAELDRLTEAKESGVRSRDRGR 181
                        F + DL++++R   L     +P  +   L++  E+  SGV       
Sbjct: 530 VQNL---------FKQVDLIDLVRWKILK-DKHIPQFLQEALEKKIES--SGV------- 570
Query: 182 WAAYLTRVRLYLLRFAIHARGRPRSR--WPPVGAEA--FARPRPATGTGPD-------GA 230
              Y  R +L+LLR    +  +  S   W P   ++       P  G   D        +
Sbjct: 571 --TYFWRFKLFLLRILYQSMQKTPSEALWKPTHEDSKILLVDSPGMGNADDEQQEEGTSS 628
Query: 231 GNGVVSGVKDESVDGIKXXXXXXXXXXGGSNAGAEHETEDDWL--LAEIRRRERVLARGA 288
              V  G+++ S +G             G +AG     E+  L    +I   E  L R  
Sbjct: 629 KQVVKQGLQERSKEGDVEEPTDDSLPTTG-DAGGREPMEEKLLEIQGKIEAVEMHLTREH 687
Query: 289 ACRVLERAFLCTRFDLHLHLPARGLLSFITSGDTSAHATDAQVLAANILKKIGKQDIQEK 348
             RVL   +L T    +  +P RGL +F+ S +     T A+VL  +I KK+ KQ   E 
Sbjct: 688 MKRVLGEVYLHTWITENTSIPTRGLCNFLMSDEEYDDRT-ARVLIGHISKKMNKQTFPEH 746
Query: 349 CVLCAAVIPFVSHAKATCANGHQWLRCAVTFAACQTLRYRRCILHDSVAAFPKATDPEWM 408
           C LC  ++PF    +A C+NGH WLRC +T+ +CQ+L YRRC+LHDS+A  P   DP+W+
Sbjct: 747 CSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPAPEDPDWI 806
Query: 409 KQHLDSPCIYCDSP 422
           K+ L SPC +CDSP
Sbjct: 807 KRLLQSPCPFCDSP 820
  Database: Homo_sapiens.GRCh38.pep.all.fa
    Posted date:  Jun 9, 2016 10:45 AM
  Number of letters in database: 38,475,758
  Number of sequences in database:  102,450
  
Lambda     K      H
   0.324    0.137    0.436 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 102450
Number of Hits to DB: 32,446,284
Number of extensions: 1329566
Number of successful extensions: 4131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4194
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 38,475,758
Length adjustment: 110
Effective length of query: 314
Effective length of database: 27,206,258
Effective search space: 8542765012
Effective search space used: 8542765012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Protein Sequence
(Fasta)		XSVQTAHVTG LHPQPICGMA AVCSNRWGDG SGGEGDVSVS IPAVAGQRRW VRFERRIMRL 60
PGPLGRARIR GLAASPNGAF LAVLTTEGLS VGLHPPQRTY SLAFVSLVNP DEAFRRLVSV 120
PPPDSPSLSA CGLAFLRADL LEVLRSHSLD VGGRVPAPML AELDRLTEAK ESGVRSRDRG 180
RWAAYLTRVR LYLLRFAIHA RGRPRSRWPP VGAEAFARPR PATGTGPDGA GNGVVSGVKD 240
ESVDGIKDEE DDDDDDDGGS NAGAEHETED DWLLAEIRRR ERVLARGAAC RVLERAFLCT 300
RFDLHLHLPA RGLLSFITSG DTSAHATDAQ VLAANILKKI GKQDIQEKCV LCAAVIPFVS 360
HAKATCANGH QWLRCAVTFA ACQTLRYRRC ILHDSVAAFP KATDPEWMKQ HLDSPCIYCD 420
SPYL 424
Nucleotide Sequence
(Fasta)		NNGAGCGTGC AGACAGCGCA CGTCACGGGC CTGCACCCGC AGCCTATCTG CGGCATGGCC 60
GCCGTCTGCT CGAACCGTTG GGGCGACGGC AGTGGTGGCG AGGGCGATGT CAGCGTCAGC 120
ATCCCCGCCG TCGCGGGGCA GAGACGATGG GTGCGCTTCG AGAGGCGCAT CATGAGGCTT 180
CCGGGCCCCC TCGGCCGCGC GCGCATCCGC GGCCTCGCGG CATCACCCAA CGGAGCCTTC 240
CTCGCCGTGC TCACCACGGA GGGGCTGTCC GTTGGCCTCC ACCCTCCGCA AAGGACGTAC 300
TCGCTCGCGT TCGTCTCGCT CGTCAACCCG GACGAGGCCT TCAGGCGCTT GGTCTCCGTC 360
CCGCCGCCCG ACTCGCCCTC TTTGTCCGCT TGCGGCCTGG CGTTTTTGCG GGCCGACCTG 420
CTGGAGGTGC TGCGCTCGCA CTCGCTCGAC GTCGGAGGCC GGGTGCCTGC CCCCATGCTG 480
GCCGAGTTGG ACCGCCTGAC GGAGGCGAAG GAGAGTGGCG TGCGCTCGCG GGACCGGGGC 540
CGCTGGGCCG CCTACCTCAC GCGCGTCAGG CTCTATCTGC TGCGCTTTGC CATTCACGCC 600
CGGGGGAGGC CGCGGTCACG CTGGCCGCCG GTAGGGGCGG AGGCCTTCGC TCGGCCTCGT 660
CCAGCCACGG GAACCGGTCC AGACGGGGCC GGCAACGGCG TCGTGTCCGG CGTCAAAGAT 720
GAGAGTGTGG ACGGCATCAA AGACGAGGAG GACGATGACG ACGATGACGA TGGCGGTAGT 780
AACGCAGGTG CTGAGCACGA GACGGAAGAC GACTGGCTTC TGGCCGAGAT CCGGCGCAGG 840
GAGAGGGTGC TGGCCCGGGG AGCGGCGTGC CGTGTCCTTG AGAGGGCCTT CCTGTGCACG 900
CGCTTTGACC TGCACCTGCA CCTGCCAGCG CGCGGCCTGC TGAGCTTCAT CACCAGTGGG 960
GACACGAGCG CGCACGCCAC CGATGCACAG GTGCTGGCTG CGAACATCCT GAAGAAGATC 1020
GGCAAGCAGG ACATCCAGGA GAAGTGCGTG CTGTGTGCCG CGGTCATCCC CTTCGTGTCG 1080
CACGCCAAAG CAACCTGCGC CAATGGACAT CAGTGGCTCA GGTGCGCGGT GACATTCGCA 1140
GCTTGCCAGA CGTTGCGGTA CCGGCGGTGC ATCCTCCACG ACAGCGTGGC GGCCTTCCCC 1200
AAGGCCACGG ATCCCGAGTG GATGAAGCAG CACCTGGACA GCCCGTGCAT CTACTGTGAC 1260
TCACCGTACC TGTGA 1276
Sequence Source Ensembl
Orthology
WERAM ID Ensembl Protein ID Species Identity E-value Score
WERAM-Mum-0141 ENSMUSP00000042265.5 Mus musculus 34 3e-56 216
WERAM-Gaga-0167 ENSGALP00000041753.1 Gallus gallus 33 1e-55 214
WERAM-Ran-0235 ENSRNOP00000069275.1 Rattus norvegicus 33 3e-55 213
WERAM-Anp-0004 ENSAPLP00000000397.1 Anas platyrhynchos 34 3e-55 213
WERAM-Dio-0046 ENSDORP00000004750.1 Dipodomys ordii 33 3e-55 213
WERAM-Meg-0064 ENSMGAP00000006024.2 Meleagris gallopavo 33 3e-55 213
WERAM-Myl-0131 ENSMLUP00000010516.2 Myotis lucifugus 34 3e-55 213
WERAM-Fia-0020 ENSFALP00000001535.1 Ficedula albicollis 33 2e-54 210
WERAM-Tag-0074 ENSTGUP00000005330.1 Taeniopygia guttata 33 2e-54 210
WERAM-Cap-0154 ENSCPOP00000012836.2 Cavia porcellus 34 7e-54 208
WERAM-Ict-0051 ENSSTOP00000004474.2 Ictidomys tridecemlineatus 34 1e-53 207
WERAM-Prc-0045 ENSPCAP00000004132.1 Procavia capensis 33 1e-53 207
WERAM-Otg-0086 ENSOGAP00000006821.2 Otolemur garnettii 33 2e-53 207
WERAM-Gog-0096 ENSGGOP00000008136.2 Gorilla gorilla 33 2e-53 206
WERAM-Pat-0179 ENSPTRP00000036792.5 Pan troglodytes 33 2e-53 206
WERAM-Nol-0144 ENSNLEP00000015670.1 Nomascus leucogenys 33 3e-53 206
WERAM-Hos-0109 ENSP00000361219.4 Homo sapiens 33 3e-53 206
WERAM-Mam-0081 ENSMMUP00000012973.2 Macaca mulatta 33 3e-53 206
WERAM-Chs-0181 ENSCSAP00000011065.1 Chlorocebus sabaeus 33 4e-53 206
WERAM-Paa-0214 ENSPANP00000018814.1 Papio anubis 33 4e-53 206
WERAM-Orc-0084 ENSOCUP00000007559.2 Oryctolagus cuniculus 33 4e-53 206
WERAM-Sus-0038 ENSSSCP00000006140.2 Sus scrofa 33 7e-53 205
WERAM-Ptv-0013 ENSPVAP00000001940.1 Pteropus vampyrus 33 7e-53 205
WERAM-Caj-0193 ENSCJAP00000033601.2 Callithrix jacchus 33 1e-52 204
WERAM-Loa-0144 ENSLAFP00000012898.2 Loxodonta africana 34 2e-52 204
WERAM-Pes-0063 ENSPSIP00000008307.1 Pelodiscus sinensis 33 2e-52 204
WERAM-Caf-0206 ENSCAFP00000029457.3 Canis familiaris 33 4e-52 202
WERAM-Aim-0054 ENSAMEP00000004386.1 Ailuropoda melanoleuca 33 5e-52 202
WERAM-Eqc-0158 ENSECAP00000016787.1 Equus caballus 32 6e-52 202
WERAM-Poa-0187 ENSPPYP00000022107.2 Pongo abelii 33 8e-52 201
WERAM-Bot-0051 ENSBTAP00000005344.4 Bos taurus 33 1e-51 201
WERAM-Mae-0113 ENSMEUP00000010731.1 Macropus eugenii 32 1e-51 201
WERAM-Ova-0057 ENSOARP00000006214.1 Ovis aries 33 1e-51 201
WERAM-Leo-0050 ENSLOCP00000006815.1 Lepisosteus oculatus 34 3e-51 200
WERAM-Asm-0064 ENSAMXP00000007106.1 Astyanax mexicanus 33 3e-51 200
WERAM-Sah-0204 ENSSHAP00000022249.1 Sarcophilus harrisii 32 4e-51 199
WERAM-Mup-0142 ENSMPUP00000012425.1 Mustela putorius furo 33 6e-51 199
WERAM-Mod-0105 ENSMODP00000015717.3 Monodelphis domestica 31 8e-50 195
WERAM-Ora-0053 ENSOANP00000008018.1 Ornithorhynchus anatinus 33 3e-48 189
WERAM-Xet-0042 ENSXETP00000013724.2 Xenopus tropicalis 33 1e-47 188
WERAM-Lac-0076 ENSLACP00000009959.1 Latimeria chalumnae 31 2e-47 187
WERAM-Orn-0158 ENSONIP00000016371.1 Oreochromis niloticus 31 7e-47 185
WERAM-Dar-0157 ENSDARP00000092069.4 Danio rerio 30 1e-45 181
WERAM-Mim-0105 ENSMICP00000009672.1 Microcebus murinus 34 1e-45 181
WERAM-Dan-0162 ENSDNOP00000018237.1 Dasypus novemcinctus 31 7e-44 175
WERAM-Tar-0065 ENSTRUP00000013163.1 Takifugu rubripes 29 2e-43 174
WERAM-Ten-0064 ENSTNIP00000008102.1 Tetraodon nigroviridis 32 3e-42 170
WERAM-Orla-0131 ENSORLP00000015493.1 Oryzias latipes 31 5e-42 169
WERAM-Gaa-0190 ENSGACP00000023972.1 Gasterosteus aculeatus 29 3e-40 163
WERAM-Xim-0020 ENSXMAP00000001897.1 Xiphophorus maculatus 30 3e-39 160
WERAM-Pof-0048 ENSPFOP00000003714.1 Poecilia formosa 28 3e-38 156
WERAM-Tut-0160 ENSTTRP00000013367.1 Tursiops truncatus 30 2e-37 154
WERAM-Tub-0105 ENSTBEP00000011996.1 Tupaia belangeri 31 1e-35 147
WERAM-Vip-0047 ENSVPAP00000004214.1 Vicugna pacos 35 3e-35 146
WERAM-Gam-0204 ENSGMOP00000019723.1 Gadus morhua 28 4e-35 146
WERAM-Ect-0059 ENSETEP00000006428.1 Echinops telfairi 27 1e-29 128
WERAM-Soa-0054 ENSSARP00000005355.1 Sorex araneus 29 1e-29 128
WERAM-Fec-0163 ENSFCAP00000025535.1 Felis catus 29 4e-20 96.7
WERAM-Ocp-0015 ENSOPRP00000001613.1 Ochotona princeps 31 2e-16 84.3
Created Date 25-Jun-2016