| Tag |
Content |
| WERAM ID |
WERAM-Art-0120 |
| Ensembl Protein ID |
AT5G09790.2 |
| Uniprot Accession |
Q8VZJ1; ATXR5_ARATH; F4KFB9; Q1AJM5; Q9FXW6; Q9LXE2
|
| Genbank Protein ID |
NP_001078559.1; NP_196541.2
|
| Protein Name |
Histone-lysine N-methyltransferase ATXR5 |
| Genbank Nucleotide ID |
NM_001085090.1; NM_121016.2
|
| Gene Name |
ATXR5 |
| Ensembl Information |
|
| Details |
|
| Status |
Reviewed |
| Classification |
| Type |
Family |
E-value |
Score |
Start |
End |
| HMT |
SET1 |
1.80e-31 |
109.5 |
246 |
367 |
| Me_Reader |
PHD |
2.30e-09 |
38.1 |
65 |
112 |
|
| Organism |
Arabidopsis thaliana |
| NCBI Taxa ID |
3702 |
Functional Description
(View)Functional Description
Histone methyltransferase that specifically monomethylates 'Lys-37' of histone H3 (H3K27me1). Has much higher activity on nucleosomes containing H3.1 than H3.3. Involved in the formation of constitutive heterochromatin and the silencing of heterochromatic elements. Influences which sets of rRNA gene variants are expressed or silenced. |
Histone methyltransferase that specifically monomethylates 'Lys-37' of histone H3 (H3K27me1). Has much higher activity on nucleosomes containing H3.1 than H3.3. Involved in the formation of constitutive heterochromatin and the silencing of heterochromatic elements. Influences which sets of rRNA gene variants are expressed or silenced.
|
| Domain Profile |
HMT SET1
SET1.txt 2 elevakskikglglvakkeiekeelviEYvGevirsevadkrekeyekkeigvylfrldedaevvvdatkkgniarfi....nhsce....pNceakv 91
+l v++++++g++++a+ +i++ ++++EY+G+v ++ ++rek+ ++++i+++l + d+++++v++++k+gni+rfi nh++ +Nc++ +
AT5G09790.2 246 PLVVVFDPLEGYTVEADGPIKDLTFIAEYTGDV---DYLKNREKD-DCDSIMTLLLSEDPSKTLVICPDKFGNISRFInginNHNPVakkkQNCKCVR 339
68999****************************...********9.99******************************9999999988999******* PP
SET1.txt 92 vavdgekkiviyakraIekgeeltydYk 119
++++ge++++++a+r+I+kge+l+ydY+
AT5G09790.2 340 YSINGECRVLLVATRDISKGERLYYDYN 367
***************************7 PP
Me_Reader PHD
PHD.txt 2 tiClvCgkddegekemvqCdeCddwfHlkCvklplsslpegkswyCpsCk 51
+C C ++eg++e++ Cd+Cd+ fH+kC+ + ++p g w+C C
AT5G09790.2 65 VTCEKC-GSGEGDDELLLCDKCDRGFHMKCLRPIVVRVPIG-TWLCVDCS 112
57999*.55555566**************************.*******7 PP
|
Protein Sequence
(Fasta) | MATWNASSPA ASPCSSRRRT KAPARRPSSE SPPPRKMKSM AEIMAKSVPV VEQEEEEDED 60
SYSNVTCEKC GSGEGDDELL LCDKCDRGFH MKCLRPIVVR VPIGTWLCVD CSDQRPVRRL 120
SQKKILHFFR IEKHTHQTDK LELSQEETRK RRRSCSLTVK KRRRKLLPLV PSEDPDQRLA 180
QMGTLASALT ALGIKYSDGL NYVPGMAPRS ANQSKLEKGG MQVLCKEDLE TLEQCQSMYR 240
RGECPPLVVV FDPLEGYTVE ADGPIKDLTF IAEYTGDVDY LKNREKDDCD SIMTLLLSED 300
PSKTLVICPD KFGNISRFIN GINNHNPVAK KKQNCKCVRY SINGECRVLL VATRDISKGE 360
RLYYDYNGYE HEYPTHHFL 379Protein Fasta Sequence
>AT5G09790.2|ATXR5|Arabidopsis thaliana
MATWNASSPAASPCSSRRRTKAPARRPSSESPPPRKMKSMAEIMAKSVPVVEQEEEEDEDSYSNVTCEKCGSGEGDDELLLCDKCDRGFHMKCLRPIVVRVPIGTWLCVDCSDQRPVRRLSQKKILHFFRIEKHTHQTDKLELSQEETRKRRRSCSLTVKKRRRKLLPLVPSEDPDQRLAQMGTLASALTALGIKYSDGLNYVPGMAPRSANQSKLEKGGMQVLCKEDLETLEQCQSMYRRGECPPLVVVFDPLEGYTVEADGPIKDLTFIAEYTGDVDYLKNREKDDCDSIMTLLLSEDPSKTLVICPDKFGNISRFINGINNHNPVAKKKQNCKCVRYSINGECRVLLVATRDISKGERLYYDYNGYEHEYPTHHFL |
Nucleotide Sequence
(Fasta) | ATGGCCACAT GGAACGCATC CTCCCCTGCG GCGTCTCCTT GCTCATCGAG GCGACGAACG 60
AAAGCTCCAG CGAGACGCCC TTCCTCCGAA TCTCCACCAC CGAGGAAGAT GAAATCAATG 120
GCTGAGATAA TGGCGAAATC TGTCCCTGTG GTTGAACAAG AAGAAGAAGA AGACGAAGAC 180
AGCTACAGTA ACGTCACCTG CGAGAAATGT GGTTCTGGAG AAGGAGACGA TGAGCTTCTT 240
CTCTGTGACA AATGCGATAG AGGCTTTCAC ATGAAATGCC TTAGACCCAT TGTTGTTCGT 300
GTCCCCATTG GAACTTGGCT TTGTGTCGAT TGTTCCGACC AACGACCTGT AAGAAGGTTA 360
TCTCAGAAGA AGATTTTACA TTTCTTTCGG ATTGAGAAGC ATACTCATCA AACAGACAAA 420
TTGGAATTGA GTCAAGAAGA AACTAGAAAG CGGAGACGAT CTTGCTCTTT GACAGTGAAG 480
AAAAGAAGGA GAAAACTCTT ACCTTTGGTT CCATCAGAAG ATCCTGATCA GAGGCTTGCA 540
CAAATGGGAA CACTTGCTTC TGCATTAACG GCATTGGGTA TCAAATACAG CGATGGTTTA 600
AATTATGTTC CCGGAATGGC TCCTCGGTCT GCAAATCAAT CCAAGTTAGA GAAAGGTGGG 660
ATGCAGGTGC TATGCAAAGA AGATTTAGAG ACATTGGAAC AATGTCAATC TATGTATAGA 720
CGAGGAGAAT GCCCTCCTCT CGTTGTGGTA TTTGATCCGC TTGAAGGTTA CACAGTTGAA 780
GCAGATGGTC CTATTAAGGA CTTAACATTC ATAGCTGAAT ATACAGGGGA TGTTGATTAC 840
TTGAAAAACC GAGAAAAAGA CGATTGTGAC AGCATCATGA CTCTCCTTTT ATCAGAAGAT 900
CCTTCAAAGA CTCTTGTTAT CTGTCCAGAC AAGTTTGGAA ACATATCTCG CTTCATTAAT 960
GGCATTAACA ATCACAATCC GGTTGCTAAG AAGAAGCAGA ACTGCAAATG CGTGAGGTAT 1020
AGCATAAACG GCGAATGTCG AGTTCTTCTA GTGGCTACAC GCGATATATC GAAAGGGGAA 1080
AGGCTCTATT ATGACTACAA TGGTTATGAA CATGAGTATC CTACTCATCA CTTCCTCTGA 1140
TCTTTCAATT CTAACAGTTC TACAGAGTCT CTAGATCAGA TGTTCTTTTT GTTGCCATAT 1200
TACAGGTCAA TTATAAATGT AGGGCTGCTG AATATATGGC CTTTAATTAT GAAGTTAGCG 1260
GTAGAATAAT TGGATTTGGA ATGACATTAC AGAGATTAAG ATGTGGCAAA TGTCAATTGC 1320
TGAACTTTTG TTTGATATCA AATGAAATCC TAACCTTTTT CTT
1364Nucleotide Fasta Sequence
>AT5G09790.2|PHD|Arabidopsis thaliana
ATGGCCACATGGAACGCATCCTCCCCTGCGGCGTCTCCTTGCTCATCGAGGCGACGAACGAAAGCTCCAGCGAGACGCCCTTCCTCCGAATCTCCACCACCGAGGAAGATGAAATCAATGGCTGAGATAATGGCGAAATCTGTCCCTGTGGTTGAACAAGAAGAAGAAGAAGACGAAGACAGCTACAGTAACGTCACCTGCGAGAAATGTGGTTCTGGAGAAGGAGACGATGAGCTTCTTCTCTGTGACAAATGCGATAGAGGCTTTCACATGAAATGCCTTAGACCCATTGTTGTTCGTGTCCCCATTGGAACTTGGCTTTGTGTCGATTGTTCCGACCAACGACCTGTAAGAAGGTTATCTCAGAAGAAGATTTTACATTTCTTTCGGATTGAGAAGCATACTCATCAAACAGACAAATTGGAATTGAGTCAAGAAGAAACTAGAAAGCGGAGACGATCTTGCTCTTTGACAGTGAAGAAAAGAAGGAGAAAACTCTTACCTTTGGTTCCATCAGAAGATCCTGATCAGAGGCTTGCACAAATGGGAACACTTGCTTCTGCATTAACGGCATTGGGTATCAAATACAGCGATGGTTTAAATTATGTTCCCGGAATGGCTCCTCGGTCTGCAAATCAATCCAAGTTAGAGAAAGGTGGGATGCAGGTGCTATGCAAAGAAGATTTAGAGACATTGGAACAATGTCAATCTATGTATAGACGAGGAGAATGCCCTCCTCTCGTTGTGGTATTTGATCCGCTTGAAGGTTACACAGTTGAAGCAGATGGTCCTATTAAGGACTTAACATTCATAGCTGAATATACAGGGGATGTTGATTACTTGAAAAACCGAGAAAAAGACGATTGTGACAGCATCATGACTCTCCTTTTATCAGAAGATCCTTCAAAGACTCTTGTTATCTGTCCAGACAAGTTTGGAAACATATCTCGCTTCATTAATGGCATTAACAATCACAATCCGGTTGCTAAGAAGAAGCAGAACTGCAAATGCGTGAGGTATAGCATAAACGGCGAATGTCGAGTTCTTCTAGTGGCTACACGCGATATATCGAAAGGGGAAAGGCTCTATTATGACTACAATGGTTATGAACATGAGTATCCTACTCATCACTTCCTCTGATCTTTCAATTCTAACAGTTCTACAGAGTCTCTAGATCAGATGTTCTTTTTGTTGCCATATTACAGGTCAATTATAAATGTAGGGCTGCTGAATATATGGCCTTTAATTATGAAGTTAGCGGTAGAATAATTGGATTTGGAATGACATTACAGAGATTAAGATGTGGCAAATGTCAATTGCTGAACTTTTGTTTGATATCAAATGAAATCCTAACCTTTTTCTT
|
| Sequence Source |
Ensembl |
| Keyword |
KW-0025--Alternative splicing
KW-0150--Chloroplast
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0489--Methyltransferase
KW-0539--Nucleus
KW-0934--Plastid
KW-1185--Reference proteome
KW-0949--S-adenosyl-L-methionine
KW-0808--Transferase
KW-0809--Transit peptide
KW-0862--Zinc
KW-0863--Zinc-finger
--
|
| Interpro |
IPR001214--SET_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
|
| PROSITE |
PS50280--SET
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
|
| Pfam |
PF00628--PHD
PF00856--SET
|
| Gene Ontology |
GO:0009507--C:chloroplast
GO:0005634--C:nucleus
GO:0018024--F:histone-lysine N-methyltransferase activity
GO:0008270--F:zinc ion binding
|
| Orthology |
|
| Created Date |
25-Jun-2016 |
