Theobroma cacao      Ac_Reader      Bromodomain

※ Bromodomain family introduction

    Bromodomain: Bromodomains (BRDs) are protein interaction modules that exclusively recognize acetylation motifs. BRDs are evolutionarily conserved and present in diverse nuclear proteins comprising HATs (GCN5, PCAF), ATP-dependent chromatin-remodeling complexes (BAZ1B), helicases (SMARCA), methyltransferases (MLL, ASH1L), transcriptional coactivators (TRIM/TIF1, TAFs) transcriptional mediators (TAF1), nuclear-scaffolding proteins(PB1), and the BET family. Despite large sequence variations, all BRD modules share a conserved fold that comprises a left-handed bundle of four a helices, linked by loop regions of variablelength, which line the Kac binding site and determine binding specificity. (1)

Reference
1. P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J.P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Müller, T. Pawson,et al.Histone recognition and large-scale structural analysis of the human bromodomain family. Cell.2012;149(1):214-231. PMID: 22464331.



There are 24 genes.  Reviewed (0 or Unreviewed (24

No.StatusWERAM IDGene/Alias Name
1
WERAM-Thc-0011
TCM_003703
2
WERAM-Thc-0013
TCM_004223
3
WERAM-Thc-0016
TCM_005306
4
WERAM-Thc-0018
TCM_005963
5
WERAM-Thc-0020
TCM_006171
6
WERAM-Thc-0021
TCM_006174
7
WERAM-Thc-0024
TCM_007313
8
WERAM-Thc-0025
TCM_007561
9
WERAM-Thc-0035
TCM_014587
10
WERAM-Thc-0044
TCM_017092
11
WERAM-Thc-0049
TCM_019641
12
WERAM-Thc-0050
TCM_019910
13
WERAM-Thc-0052
TCM_020130
14
WERAM-Thc-0058
TCM_021341
15
WERAM-Thc-0062
TCM_024895
16
WERAM-Thc-0078
TCM_029585
17
WERAM-Thc-0079
TCM_029951
18
WERAM-Thc-0084
TCM_030851
19
WERAM-Thc-0085
TCM_031714
20
WERAM-Thc-0090
TCM_034401
21
WERAM-Thc-0091
TCM_034402
22
WERAM-Thc-0108
TCM_040405
23
WERAM-Thc-0119
TCM_043095
24
WERAM-Thc-0123
TCM_045596